Debian 13 (Trixie) native package

r-bioc-rhtslib

HTSlib high-throughput sequencing library as GNU R package

Packages / Debian 13 (Trixie) / gnu-r / r-bioc-rhtslib

Package: r-bioc-rhtslib (3.2.0+dfsg-2)

Maintainers:

Debian R Packages Maintainers

External Resources:

Homepage: [bioconductor.org]

HTSlib high-throughput sequencing library as GNU R package

Other Packages Related to r-bioc-rhtslib:

dep: r-api-4.0
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dep: r-api-bioc-3.20
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dep: [r-bioc-zlibbioc]
(Virtual) zlibbioc Bioconductor package
dep: [libbz2-1.0]
high-quality block-sorting file compressor library - runtime
dep: [libc6] (>= 2.34)
GNU C Library: Shared libraries
dep: [libcurl4t64] (>= 7.18.0)
easy-to-use client-side URL transfer library (OpenSSL flavour)
dep: [liblzma5] (>= 5.1.1alpha+20120614)
XZ-format compression library
dep: [zlib1g] (>= 1:1.1.4)
compression library - runtime

sug: [r-cran-knitr]
GNU R package for dynamic report generation using Literate Programming
sug: [r-cran-rmarkdown]
convert R markdown documents into a variety of formats
sug: [r-bioc-biocstyle]
standard styles for vignettes and other Bioconductor documents

Download r-bioc-rhtslib

Architecture	Package Size	Installed Size	Files
amd64	1.3 MiB	8.5 MiB	[list of files]
arm64	1.3 MiB	8.5 MiB	[list of files]

Package file paths (164)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/lib/R/site-library/Rhtslib/DESCRIPTION
/usr/lib/R/site-library/Rhtslib/doc/index.html
/usr/lib/R/site-library/Rhtslib/doc/Rhtslib.R
/usr/lib/R/site-library/Rhtslib/doc/Rhtslib.Rmd
/usr/lib/R/site-library/Rhtslib/help/aliases.rds
/usr/lib/R/site-library/Rhtslib/help/AnIndex
/usr/lib/R/site-library/Rhtslib/help/paths.rds
/usr/lib/R/site-library/Rhtslib/help/Rhtslib.rdb
/usr/lib/R/site-library/Rhtslib/help/Rhtslib.rdx
/usr/lib/R/site-library/Rhtslib/html/00Index.html
/usr/lib/R/site-library/Rhtslib/html/R.css
/usr/lib/R/site-library/Rhtslib/include/bam.c
/usr/lib/R/site-library/Rhtslib/include/bam_cat.c
/usr/lib/R/site-library/Rhtslib/include/bam.h
/usr/lib/R/site-library/Rhtslib/include/bam_plbuf.c
/usr/lib/R/site-library/Rhtslib/include/bam_plbuf.h
/usr/lib/R/site-library/Rhtslib/include/bam_sort.c
/usr/lib/R/site-library/Rhtslib/include/bam_sort.h
/usr/lib/R/site-library/Rhtslib/include/bedidx.c
/usr/lib/R/site-library/Rhtslib/include/bedidx.h
/usr/lib/R/site-library/Rhtslib/include/htslib/bgzf.h
/usr/lib/R/site-library/Rhtslib/include/htslib/cram.h
/usr/lib/R/site-library/Rhtslib/include/htslib/faidx.h
/usr/lib/R/site-library/Rhtslib/include/htslib/hfile.h
/usr/lib/R/site-library/Rhtslib/include/htslib/hts_defs.h
/usr/lib/R/site-library/Rhtslib/include/htslib/hts_endian.h
/usr/lib/R/site-library/Rhtslib/include/htslib/hts_expr.h
/usr/lib/R/site-library/Rhtslib/include/htslib/hts.h
/usr/lib/R/site-library/Rhtslib/include/htslib/hts_log.h
/usr/lib/R/site-library/Rhtslib/include/htslib/hts_os.h
/usr/lib/R/site-library/Rhtslib/include/htslib/kbitset.h
/usr/lib/R/site-library/Rhtslib/include/htslib/kfunc.h
/usr/lib/R/site-library/Rhtslib/include/htslib/khash.h
/usr/lib/R/site-library/Rhtslib/include/htslib/khash_str2int.h
/usr/lib/R/site-library/Rhtslib/include/htslib/klist.h
/usr/lib/R/site-library/Rhtslib/include/htslib/knetfile.h
/usr/lib/R/site-library/Rhtslib/include/htslib/kroundup.h
/usr/lib/R/site-library/Rhtslib/include/htslib/kseq.h
/usr/lib/R/site-library/Rhtslib/include/htslib/ksort.h
/usr/lib/R/site-library/Rhtslib/include/htslib/kstring.h
/usr/lib/R/site-library/Rhtslib/include/htslib/regidx.h
/usr/lib/R/site-library/Rhtslib/include/htslib/sam.h
/usr/lib/R/site-library/Rhtslib/include/htslib/synced_bcf_reader.h
/usr/lib/R/site-library/Rhtslib/include/htslib/tbx.h
/usr/lib/R/site-library/Rhtslib/include/htslib/thread_pool.h
/usr/lib/R/site-library/Rhtslib/include/htslib/vcf.h
/usr/lib/R/site-library/Rhtslib/include/htslib/vcf_sweep.h
/usr/lib/R/site-library/Rhtslib/include/htslib/vcfutils.h
/usr/lib/R/site-library/Rhtslib/include/README
/usr/lib/R/site-library/Rhtslib/include/sam_opts.c
/usr/lib/R/site-library/Rhtslib/include/sam_opts.h
/usr/lib/R/site-library/Rhtslib/include/samtools-1.7-compat.h
/usr/lib/R/site-library/Rhtslib/include/samtools.h
/usr/lib/R/site-library/Rhtslib/include/sam_utils.c
/usr/lib/R/site-library/Rhtslib/include/sam_utils.h
/usr/lib/R/site-library/Rhtslib/INDEX
/usr/lib/R/site-library/Rhtslib/libs/Rhtslib.so
/usr/lib/R/site-library/Rhtslib/Meta/features.rds
/usr/lib/R/site-library/Rhtslib/Meta/hsearch.rds
/usr/lib/R/site-library/Rhtslib/Meta/links.rds
/usr/lib/R/site-library/Rhtslib/Meta/nsInfo.rds
/usr/lib/R/site-library/Rhtslib/Meta/package.rds
/usr/lib/R/site-library/Rhtslib/Meta/Rd.rds
/usr/lib/R/site-library/Rhtslib/Meta/vignette.rds
/usr/lib/R/site-library/Rhtslib/NAMESPACE
/usr/lib/R/site-library/Rhtslib/NEWS
/usr/lib/R/site-library/Rhtslib/R/Rhtslib
/usr/lib/R/site-library/Rhtslib/R/Rhtslib.rdb
/usr/lib/R/site-library/Rhtslib/R/Rhtslib.rdx
/usr/lib/R/site-library/Rhtslib/testdata/auxf.fa
/usr/lib/R/site-library/Rhtslib/testdata/auxf.fa.fai
/usr/lib/R/site-library/Rhtslib/testdata/auxf#values_java.cram
/usr/lib/R/site-library/Rhtslib/testdata/auxf#values.sam
/usr/lib/R/site-library/Rhtslib/testdata/c1#bounds.sam
/usr/lib/R/site-library/Rhtslib/testdata/c1#clip.sam
/usr/lib/R/site-library/Rhtslib/testdata/c1.fa
/usr/lib/R/site-library/Rhtslib/testdata/c1.fa.fai
/usr/lib/R/site-library/Rhtslib/testdata/c1#noseq.sam
/usr/lib/R/site-library/Rhtslib/testdata/c1#pad1.sam
/usr/lib/R/site-library/Rhtslib/testdata/c1#pad2.sam
/usr/lib/R/site-library/Rhtslib/testdata/c1#pad3.sam
/usr/lib/R/site-library/Rhtslib/testdata/c1#unknown.sam
/usr/lib/R/site-library/Rhtslib/testdata/c2.fa
/usr/lib/R/site-library/Rhtslib/testdata/c2.fa.fai
/usr/lib/R/site-library/Rhtslib/testdata/c2#pad.sam
/usr/lib/R/site-library/Rhtslib/testdata/ce#1000.sam
/usr/lib/R/site-library/Rhtslib/testdata/ce#1.sam
/usr/lib/R/site-library/Rhtslib/testdata/ce#2.sam
/usr/lib/R/site-library/Rhtslib/testdata/ce#5b_java.cram
/usr/lib/R/site-library/Rhtslib/testdata/ce#5b.sam
/usr/lib/R/site-library/Rhtslib/testdata/ce#5.sam
/usr/lib/R/site-library/Rhtslib/testdata/ce.fa
/usr/lib/R/site-library/Rhtslib/testdata/ce.fa.fai
/usr/lib/R/site-library/Rhtslib/testdata/ce#large_seq.sam
/usr/lib/R/site-library/Rhtslib/testdata/ce#supp.sam
/usr/lib/R/site-library/Rhtslib/testdata/ce#tag_depadded.sam
/usr/lib/R/site-library/Rhtslib/testdata/ce#tag_padded.sam
/usr/lib/R/site-library/Rhtslib/testdata/ce#unmap1.sam
/usr/lib/R/site-library/Rhtslib/testdata/ce#unmap2.sam
/usr/lib/R/site-library/Rhtslib/testdata/ce#unmap.sam
/usr/lib/R/site-library/Rhtslib/testdata/colons.bam
/usr/lib/R/site-library/Rhtslib/testdata/fieldarith.sam
/usr/lib/R/site-library/Rhtslib/testdata/formatcols.vcf
/usr/lib/R/site-library/Rhtslib/testdata/formatmissing-out.vcf
/usr/lib/R/site-library/Rhtslib/testdata/formatmissing.vcf
/usr/lib/R/site-library/Rhtslib/testdata/index2.sam
/usr/lib/R/site-library/Rhtslib/testdata/index_dos.sam
/usr/lib/R/site-library/Rhtslib/testdata/index.sam
/usr/lib/R/site-library/Rhtslib/testdata/index.vcf
/usr/lib/R/site-library/Rhtslib/testdata/md#1.sam
/usr/lib/R/site-library/Rhtslib/testdata/md.fa
/usr/lib/R/site-library/Rhtslib/testdata/md.fa.fai
/usr/lib/R/site-library/Rhtslib/testdata/modhdr.expected.vcf
/usr/lib/R/site-library/Rhtslib/testdata/no_hdr_sq_1.bam
/usr/lib/R/site-library/Rhtslib/testdata/no_hdr_sq_1.expected.sam
/usr/lib/R/site-library/Rhtslib/testdata/noroundtrip-out.vcf
/usr/lib/R/site-library/Rhtslib/testdata/noroundtrip.vcf
/usr/lib/R/site-library/Rhtslib/testdata/range.bam
/usr/lib/R/site-library/Rhtslib/testdata/range.cram
/usr/lib/R/site-library/Rhtslib/testdata/realn01_exp-a.sam
/usr/lib/R/site-library/Rhtslib/testdata/realn01_exp-e.sam
/usr/lib/R/site-library/Rhtslib/testdata/realn01_exp.sam
/usr/lib/R/site-library/Rhtslib/testdata/realn01.fa
/usr/lib/R/site-library/Rhtslib/testdata/realn01.fa.fai
/usr/lib/R/site-library/Rhtslib/testdata/realn01.sam
/usr/lib/R/site-library/Rhtslib/testdata/realn02_exp-a.sam
/usr/lib/R/site-library/Rhtslib/testdata/realn02_exp-e.sam
/usr/lib/R/site-library/Rhtslib/testdata/realn02_exp.sam
/usr/lib/R/site-library/Rhtslib/testdata/realn02.fa
/usr/lib/R/site-library/Rhtslib/testdata/realn02.fa.fai
/usr/lib/R/site-library/Rhtslib/testdata/realn02-r.sam
/usr/lib/R/site-library/Rhtslib/testdata/realn02.sam
/usr/lib/R/site-library/Rhtslib/testdata/realn03_exp.sam
/usr/lib/R/site-library/Rhtslib/testdata/realn03.fa
/usr/lib/R/site-library/Rhtslib/testdata/realn03.fa.fai
/usr/lib/R/site-library/Rhtslib/testdata/realn03.sam
/usr/lib/R/site-library/Rhtslib/testdata/tabix/bed_file.bed
/usr/lib/R/site-library/Rhtslib/testdata/tabix/gff_file.gff
/usr/lib/R/site-library/Rhtslib/testdata/tabix/large_chr.vcf
/usr/lib/R/site-library/Rhtslib/testdata/tabix/vcf_file.bcf
/usr/lib/R/site-library/Rhtslib/testdata/tabix/vcf_file.vcf
/usr/lib/R/site-library/Rhtslib/testdata/test-vcf-hdr-in.vcf
/usr/lib/R/site-library/Rhtslib/testdata/vcf_meta_meta.vcf
/usr/lib/R/site-library/Rhtslib/testdata/xx#blank.sam
/usr/lib/R/site-library/Rhtslib/testdata/xx.fa
/usr/lib/R/site-library/Rhtslib/testdata/xx.fa.fai
/usr/lib/R/site-library/Rhtslib/testdata/xx#large_aux2.sam
/usr/lib/R/site-library/Rhtslib/testdata/xx#large_aux_java.cram
/usr/lib/R/site-library/Rhtslib/testdata/xx#large_aux.sam
/usr/lib/R/site-library/Rhtslib/testdata/xx#MD2.sam
/usr/lib/R/site-library/Rhtslib/testdata/xx#MD.sam
/usr/lib/R/site-library/Rhtslib/testdata/xx#minimal.sam
/usr/lib/R/site-library/Rhtslib/testdata/xx#pair.sam
/usr/lib/R/site-library/Rhtslib/testdata/xx#repeated.sam
/usr/lib/R/site-library/Rhtslib/testdata/xx#rg.sam
/usr/lib/R/site-library/Rhtslib/testdata/xx#tlen2.sam
/usr/lib/R/site-library/Rhtslib/testdata/xx#tlen.sam
/usr/lib/R/site-library/Rhtslib/testdata/xx#triplet.sam
/usr/lib/R/site-library/Rhtslib/testdata/xx#unsorted.sam
/usr/lib/R/site-library/Rhtslib/usrlib/libhts.a
/usr/lib/R/site-library/Rhtslib/usrlib/libhts.so
/usr/lib/R/site-library/Rhtslib/usrlib/libhts.so.2
/usr/share/doc/r-bioc-rhtslib/changelog.Debian.gz
/usr/share/doc/r-bioc-rhtslib/copyright

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Use this package

OpenFactory can boot this operating system in a browser VM, or start a build that includes the native package name from this record.

Try Debian 13 (Trixie) in the browser Build an image that includes r-bioc-rhtslib

Versions, suites, and repositories

Each row is recorded package-index metadata for one version, architecture, suite, and repository. Names, URLs, and sizes are source-reported; a link is a potentially mutable retrieval location, not an OpenFactory redistribution claim or proof that OpenFactory retained the artifact bytes.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
3.2.0+dfsg-2	trixie / main	amd64	Debian 13 · main · amd64	1.3 MiB	8.5 MiB	pool/main/r/r-bioc-rhtslib/r-bioc-rhtslib_3.2.0+dfsg-2_amd64.deb
3.2.0+dfsg-2	trixie / main	arm64	Debian 13 · main · arm64	1.3 MiB	8.5 MiB	pool/main/r/r-bioc-rhtslib/r-bioc-rhtslib_3.2.0+dfsg-2_arm64.deb

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Checksums and observation dates

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

3.2.0+dfsg-2 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 6d89867c65ded5667b8903dfcadf88b8440792d535dac1d859440d3b684e6ec9

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '6d89867c65ded5667b8903dfcadf88b8440792d535dac1d859440d3b684e6ec9' 'r-bioc-rhtslib_3.2.0+dfsg-2_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

3.2.0+dfsg-2 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 480a838c64439643607ca6cedee23e0df8a4342ac47e98709ab0a4fc98188deb

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '480a838c64439643607ca6cedee23e0df8a4342ac47e98709ab0a4fc98188deb' 'r-bioc-rhtslib_3.2.0+dfsg-2_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Catalog record completeness

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Sources and provenance

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 13 (Trixie) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Result: match verified
Debian 13 (Trixie) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Result: match verified