Packages / Debian 13 (Trixie) / science / staden

[Source: staden]

Package: staden (2.0.0+b11-5+b1)

DNA sequence assembly (Gap4/Gap5), editing and analysis tools

Other Packages Related to staden:

  • dep: [libc6] (>= 2.38)

    GNU C Library: Shared libraries

  • dep: [libgcc-s1] (>= 3.0)

    GCC support library

  • dep: [liblzma5] (>= 5.1.1alpha+20120614)

    XZ-format compression library

  • dep: [libpng16-16t64] (>= 1.6.2)

    Libreria PNG - runtime (versione 1.6)

  • dep: [libstaden-read14t64] (>= 1.14.12)

    Staden library for reading and writing DNA sequencing results

  • dep: [libstdc++6] (>= 5)

    GNU Standard C++ Library v3

  • dep: [libtcl8.6] (>= 8.6.0)

    Tcl (the Tool Command Language) v8.6 - run-time library files

  • dep: [libtk8.6] (>= 8.6.0)

    Tk toolkit for Tcl and X11 v8.6 - run-time files

  • dep: [libx11-6]

    Libreria lato client X11

  • dep: [zlib1g] (>= 1:1.1.4)

    compression library - runtime

  • dep: [staden-common] (= 2.0.0+b11-5)

    Architecture independent files for Staden

  • dep: [staden-io-lib-utils]

    programs for manipulating DNA sequencing files

  • dep: [tklib]

    standard Tk Library

  • rec: [med-config]

    Debian Med general config package

Download staden

ArchitecturePackage sizeInstalled sizeFilesPackage
amd641.6 MiB4.6 MiBlist of filesDownload
arm641.5 MiB5.9 MiBlist of filesDownload

Percorsi file del pacchetto (67)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

  • /usr/bin/gap4
  • /usr/bin/gap5
  • /usr/bin/pregap4
  • /usr/bin/staden
  • /usr/bin/trev
  • /usr/lib/debian-med/bin/spin
  • /usr/lib/debian-med/share/man/man1/spin.1.gz
  • /usr/lib/staden/bin/alfsplit
  • /usr/lib/staden/bin/copy_db
  • /usr/lib/staden/bin/copy_reads
  • /usr/lib/staden/bin/create_emboss_files
  • /usr/lib/staden/bin/eba
  • /usr/lib/staden/bin/find_renz
  • /usr/lib/staden/bin/gap4
  • /usr/lib/staden/bin/gap5
  • /usr/lib/staden/bin/gap5_cmd
  • /usr/lib/staden/bin/getABIcomment
  • /usr/lib/staden/bin/getABIdate
  • /usr/lib/staden/bin/getABIfield
  • /usr/lib/staden/bin/getABISampleName
  • /usr/lib/staden/bin/get_scf_field
  • /usr/lib/staden/bin/hetins
  • /usr/lib/staden/bin/init_exp
  • /usr/lib/staden/bin/make_weights
  • /usr/lib/staden/bin/mutscan
  • /usr/lib/staden/bin/polyA_clip
  • /usr/lib/staden/bin/prefinish
  • /usr/lib/staden/bin/pregap4
  • /usr/lib/staden/bin/qclip
  • /usr/lib/staden/bin/screen_seq
  • /usr/lib/staden/bin/spin
  • /usr/lib/staden/bin/staden_convert
  • /usr/lib/staden/bin/stash
  • /usr/lib/staden/bin/stops
  • /usr/lib/staden/bin/tg_index
  • /usr/lib/staden/bin/tg_index.bin
  • /usr/lib/staden/bin/tracediff
  • /usr/lib/staden/bin/trev
  • /usr/lib/staden/bin/vector_clip
  • /usr/lib/staden/libcopy_reads.so
  • /usr/lib/staden/libgap5.so
  • /usr/lib/staden/libgap.so
  • /usr/lib/staden/libg.so
  • /usr/lib/staden/libhaplo.so
  • /usr/lib/staden/libmisc.so
  • /usr/lib/staden/libmutlib.so
  • /usr/lib/staden/libprefinish.so
  • /usr/lib/staden/libprimer3.so
  • /usr/lib/staden/libseq_utils.so
  • /usr/lib/staden/libspin.so
  • /usr/lib/staden/libtext_utils.so
  • /usr/lib/staden/libtk_utils.so
  • /usr/share/applications/gap4.desktop
  • /usr/share/applications/gap5.desktop
  • /usr/share/applications/pregap4.desktop
  • /usr/share/applications/trev.desktop
  • /usr/share/bash-completion/completions/staden
  • /usr/share/doc/staden/changelog.Debian.arm64.gz
  • /usr/share/doc/staden/changelog.Debian.gz
  • /usr/share/doc/staden/changelog.gz
  • /usr/share/doc/staden/copyright
  • /usr/share/doc/staden/README.Debian
  • /usr/share/man/man1/gap4.1.gz
  • /usr/share/man/man1/gap5.1.gz
  • /usr/share/man/man1/pregap4.1.gz
  • /usr/share/man/man1/trev.1.gz
  • /usr/share/staden/icon4bl.svg

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

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Versioni, suite e repository

Ogni riga è metadato dell'indice pacchetti per una versione, architettura, suite e repository. Nomi, URL e dimensioni arrivano dalla fonte; un link è un punto di recupero mutabile, non una redistribuzione OpenFactory.

VersionReleaseArchitectureRepositoryPackage sizeInstalled sizePublisher repository artifact
2.0.0+b11-5+b1trixie / mainarm64Debian 13 · main · arm641.5 MiB5.9 MiBpool/main/s/staden/staden_2.0.0+b11-5+b1_arm64.deb
2.0.0+b11-5trixie / mainamd64Debian 13 · main · amd641.6 MiB4.6 MiBpool/main/s/staden/staden_2.0.0+b11-5_amd64.deb

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Checksum e date di osservazione

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

2.0.0+b11-5+b1 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: cdaed227d9f09ce82a5acbfcd1b730354234ac915f79cd8e519325ee9fbef78f

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' 'cdaed227d9f09ce82a5acbfcd1b730354234ac915f79cd8e519325ee9fbef78f' 'staden_2.0.0+b11-5+b1_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

2.0.0+b11-5 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: e272dfed3f9998ecbd8bcbafe92eba048f7230f3c86af06202dc93d8f9726360

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' 'e272dfed3f9998ecbd8bcbafe92eba048f7230f3c86af06202dc93d8f9726360' 'staden_2.0.0+b11-5_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Fonti e provenienza

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

  • Debian 13 (Trixie) main amd64Sep 1, 2026

    Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: main/binary-amd64/Packages.xz
    Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
    Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
    Result: match verified

  • Debian 13 (Trixie) main arm64Sep 1, 2026

    Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: main/binary-arm64/Packages.xz
    Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
    Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
    Result: match verified