Debian 13 (Trixie) native package

tombo

identification of modified nucleotides from raw nanopore sequencing data

Packages / Debian 13 (Trixie) / science / tombo

[Source: tombo]

Package: tombo (1.5.1-7+b2)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [github.com]

Similar packages:

[tombo-doc]
identification of modified nucleotides from raw nanopore sequencing data (doc)

identification of modified nucleotides from raw nanopore sequencing data

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dep: [python3-numpy]
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dep: [python3] (<< 3.14)
interactive high-level object-oriented language (default python3 version)
dep: [python3] (>= 3.13~)
interactive high-level object-oriented language (default python3 version)
dep: python3-numpy2-abi0
Package not available
dep: python3-numpy-abi9
Package not available
dep: [python3] [any]
interactive high-level object-oriented language (default python3 version)
dep: [libc6] (>= 2.29)
GNU C Library: Shared libraries

rec: [python3-pyfaidx]
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Download tombo

Architecture	Package Size	Installed Size	Files
amd64	440 KiB	1.5 MiB	[list of files]
arm64	427 KiB	1.4 MiB	[list of files]

Percorsi file del pacchetto (64)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/tombo
/usr/lib/python3/dist-packages/ont_tombo-1.5.1.egg-info/dependency_links.txt
/usr/lib/python3/dist-packages/ont_tombo-1.5.1.egg-info/entry_points.txt
/usr/lib/python3/dist-packages/ont_tombo-1.5.1.egg-info/PKG-INFO
/usr/lib/python3/dist-packages/ont_tombo-1.5.1.egg-info/requires.txt
/usr/lib/python3/dist-packages/ont_tombo-1.5.1.egg-info/top_level.txt
/usr/lib/python3/dist-packages/tombo/_c_dynamic_programming.cpython-313-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/tombo/_c_dynamic_programming.cpython-313-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/tombo/_c_dynamic_programming.pyx
/usr/lib/python3/dist-packages/tombo/_c_helper.cpython-313-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/tombo/_c_helper.cpython-313-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/tombo/_c_helper.pyx
/usr/lib/python3/dist-packages/tombo/_default_parameters.py
/usr/lib/python3/dist-packages/tombo/_event_resquiggle.py
/usr/lib/python3/dist-packages/tombo/_filter_reads.py
/usr/lib/python3/dist-packages/tombo/__init__.py
/usr/lib/python3/dist-packages/tombo/__main__.py
/usr/lib/python3/dist-packages/tombo/_option_parsers.py
/usr/lib/python3/dist-packages/tombo/_plot_commands.py
/usr/lib/python3/dist-packages/tombo/_preprocess.py
/usr/lib/python3/dist-packages/tombo/resquiggle.py
/usr/lib/python3/dist-packages/tombo/R_scripts/debugDP.R
/usr/lib/python3/dist-packages/tombo/R_scripts/debugFit.R
/usr/lib/python3/dist-packages/tombo/R_scripts/debugRawDP.R
/usr/lib/python3/dist-packages/tombo/R_scripts/plotGroupComp.R
/usr/lib/python3/dist-packages/tombo/R_scripts/plotKmerDist.R
/usr/lib/python3/dist-packages/tombo/R_scripts/plotModelComp.R
/usr/lib/python3/dist-packages/tombo/R_scripts/plotMotifStats.R
/usr/lib/python3/dist-packages/tombo/R_scripts/plotMultiReadCorr.R
/usr/lib/python3/dist-packages/tombo/R_scripts/plotPerReadStats.R
/usr/lib/python3/dist-packages/tombo/R_scripts/plotReadCorr.R
/usr/lib/python3/dist-packages/tombo/R_scripts/plotROCPerRead.R
/usr/lib/python3/dist-packages/tombo/R_scripts/plotROC.R
/usr/lib/python3/dist-packages/tombo/R_scripts/plotSigMDS.R
/usr/lib/python3/dist-packages/tombo/R_scripts/plotSingleRead.R
/usr/lib/python3/dist-packages/tombo/R_scripts/plotSingleRun.R
/usr/lib/python3/dist-packages/tombo/_text_output_commands.py
/usr/lib/python3/dist-packages/tombo/tombo_helper.py
/usr/lib/python3/dist-packages/tombo/tombo_models/tombo.DNA.5mC.model
/usr/lib/python3/dist-packages/tombo/tombo_models/tombo.DNA.6mA.model
/usr/lib/python3/dist-packages/tombo/tombo_models/tombo.DNA.CpG.model
/usr/lib/python3/dist-packages/tombo/tombo_models/tombo.DNA.dam.model
/usr/lib/python3/dist-packages/tombo/tombo_models/tombo.DNA.dcm.model
/usr/lib/python3/dist-packages/tombo/tombo_models/tombo.DNA.model
/usr/lib/python3/dist-packages/tombo/tombo_models/tombo.RNA.180mV.model
/usr/lib/python3/dist-packages/tombo/tombo_models/tombo.RNA.200mV.model
/usr/lib/python3/dist-packages/tombo/tombo_models/tombo.RNA.5mC.model
/usr/lib/python3/dist-packages/tombo/tombo_stats.py
/usr/lib/python3/dist-packages/tombo/_version.py
/usr/share/doc/tombo/changelog.Debian.amd64.gz
/usr/share/doc/tombo/changelog.Debian.arm64.gz
/usr/share/doc/tombo/changelog.Debian.gz
/usr/share/doc/tombo/copyright
/usr/share/man/man1/tombo.1.gz
/usr/share/python3/runtime.d/tombo.rtupdate
/usr/share/tombo/scripts/debug_bandwidth.R
/usr/share/tombo/scripts/debug_est_alt.R
/usr/share/tombo/scripts/debug_params.R
/usr/share/tombo/scripts/dump_per_read_statistics.py
/usr/share/tombo/scripts/outlier_robust_llr.R
/usr/share/tombo/scripts/plot_correction.py
/usr/share/tombo/scripts/plot_multi_correction.py
/usr/share/tombo/scripts/plot_single_read.py
/usr/share/tombo/scripts/test_beta_priors.R

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

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Versioni, suite e repository

Ogni riga è metadato dell'indice pacchetti per una versione, architettura, suite e repository. Nomi, URL e dimensioni arrivano dalla fonte; un link è un punto di recupero mutabile, non una redistribuzione OpenFactory.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
1.5.1-7+b2	trixie / main	amd64	Debian 13 · main · amd64	440 KiB	1.5 MiB	pool/main/t/tombo/tombo_1.5.1-7+b2_amd64.deb
1.5.1-7+b2	trixie / main	arm64	Debian 13 · main · arm64	427 KiB	1.4 MiB	pool/main/t/tombo/tombo_1.5.1-7+b2_arm64.deb

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Checksum e date di osservazione

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

1.5.1-7+b2 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 81ca149dab189e43c1984033d8ee17ba382514aa3da4dc62e18393a200077829

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '81ca149dab189e43c1984033d8ee17ba382514aa3da4dc62e18393a200077829' 'tombo_1.5.1-7+b2_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

1.5.1-7+b2 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 3bbae5dc1a6f97927ec7b7dfd7b3eba24f98cc529b86b99a9fe1e16dcd767f53

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '3bbae5dc1a6f97927ec7b7dfd7b3eba24f98cc529b86b99a9fe1e16dcd767f53' 'tombo_1.5.1-7+b2_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Completezza del record

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Fonti e provenienza

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 13 (Trixie) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Result: match verified
Debian 13 (Trixie) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Result: match verified