Fedora 43 native package

python3-bioframe

Operations and utilities for Genomic Interval Dataframes

Packages / Fedora 43 / Unspecified / python3-bioframe

[Source: python-bioframe]

Package: python3-bioframe (0.8.0-7.fc43)

[Project overview: python-bioframe]

External Resources:

Homepage: [github.com]

Operations and utilities for Genomic Interval Dataframes

Bioframe enables flexible and scalable operations on genomic interval dataframes in Python. Bioframe is built directly on top of Pandas. Bioframe provides: - A variety of genomic interval operations that work directly on dataframes. - Operations for special classes of genomic intervals, including chromosome arms and fixed-size bins. - Conveniences for diverse tabular genomic data formats and loading genome assembly summary information. Bioframe is an Affiliated Project of NumFOCUS.

Other Packages Related to python3-bioframe:

dep: (python3.14dist(numpy) < 3~~ with python3.14dist(numpy) >= 1.10)
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dep: python(abi) (= 3.14)
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dep: python3.14dist(matplotlib)
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dep: python3.14dist(pandas) (>= 1.3)
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dep: python3.14dist(pyyaml)
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dep: python3.14dist(requests)
Package not available

rec: python3dist(biopython)
Package not available
rec: python3dist(pybbi)
Package not available
rec: python3dist(pysam)
Package not available

Download python3-bioframe

Architecture	Package Size	Installed Size	Files
noarch	220 KiB	1.0 MiB	[list of files]

Percorsi file del pacchetto (95)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/lib/python3.14/site-packages/bioframe
/usr/lib/python3.14/site-packages/bioframe-0.8.0.dist-info
/usr/lib/python3.14/site-packages/bioframe-0.8.0.dist-info/INSTALLER
/usr/lib/python3.14/site-packages/bioframe-0.8.0.dist-info/licenses
/usr/lib/python3.14/site-packages/bioframe-0.8.0.dist-info/licenses/LICENSE
/usr/lib/python3.14/site-packages/bioframe-0.8.0.dist-info/METADATA
/usr/lib/python3.14/site-packages/bioframe-0.8.0.dist-info/WHEEL
/usr/lib/python3.14/site-packages/bioframe/core
/usr/lib/python3.14/site-packages/bioframe/core/arrops.py
/usr/lib/python3.14/site-packages/bioframe/core/checks.py
/usr/lib/python3.14/site-packages/bioframe/core/construction.py
/usr/lib/python3.14/site-packages/bioframe/core/__init__.py
/usr/lib/python3.14/site-packages/bioframe/core/__pycache__
/usr/lib/python3.14/site-packages/bioframe/core/__pycache__/arrops.cpython-314.opt-1.pyc
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/usr/lib/python3.14/site-packages/bioframe/core/__pycache__/__init__.cpython-314.pyc
/usr/lib/python3.14/site-packages/bioframe/core/__pycache__/specs.cpython-314.opt-1.pyc
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/usr/lib/python3.14/site-packages/bioframe/core/__pycache__/stringops.cpython-314.opt-1.pyc
/usr/lib/python3.14/site-packages/bioframe/core/__pycache__/stringops.cpython-314.pyc
/usr/lib/python3.14/site-packages/bioframe/core/specs.py
/usr/lib/python3.14/site-packages/bioframe/core/stringops.py
/usr/lib/python3.14/site-packages/bioframe/extras.py
/usr/lib/python3.14/site-packages/bioframe/__init__.py
/usr/lib/python3.14/site-packages/bioframe/io
/usr/lib/python3.14/site-packages/bioframe/io/assembly.py
/usr/lib/python3.14/site-packages/bioframe/io/bed.py
/usr/lib/python3.14/site-packages/bioframe/io/data
/usr/lib/python3.14/site-packages/bioframe/io/data/_assemblies.yml
/usr/lib/python3.14/site-packages/bioframe/io/data/ce10.seqinfo.tsv
/usr/lib/python3.14/site-packages/bioframe/io/data/ce11.seqinfo.tsv
/usr/lib/python3.14/site-packages/bioframe/io/data/danRer10.seqinfo.tsv
/usr/lib/python3.14/site-packages/bioframe/io/data/danRer11.seqinfo.tsv
/usr/lib/python3.14/site-packages/bioframe/io/data/dm3.seqinfo.tsv
/usr/lib/python3.14/site-packages/bioframe/io/data/dm6.seqinfo.tsv
/usr/lib/python3.14/site-packages/bioframe/io/data/hg19.cytoband.tsv
/usr/lib/python3.14/site-packages/bioframe/io/data/hg19.seqinfo.tsv
/usr/lib/python3.14/site-packages/bioframe/io/data/hg38.cytoband.tsv
/usr/lib/python3.14/site-packages/bioframe/io/data/hg38.seqinfo.tsv
/usr/lib/python3.14/site-packages/bioframe/io/data/hs1.cytoband.tsv
/usr/lib/python3.14/site-packages/bioframe/io/data/hs1.seqinfo.tsv
/usr/lib/python3.14/site-packages/bioframe/io/data/mm10.seqinfo.tsv
/usr/lib/python3.14/site-packages/bioframe/io/data/mm39.seqinfo.tsv
/usr/lib/python3.14/site-packages/bioframe/io/data/mm9.seqinfo.tsv
/usr/lib/python3.14/site-packages/bioframe/io/data/sacCer3.seqinfo.tsv
/usr/lib/python3.14/site-packages/bioframe/io/data/wuhCor1.seqinfo.tsv
/usr/lib/python3.14/site-packages/bioframe/io/fileops.py
/usr/lib/python3.14/site-packages/bioframe/io/__init__.py
/usr/lib/python3.14/site-packages/bioframe/io/__pycache__
/usr/lib/python3.14/site-packages/bioframe/io/__pycache__/assembly.cpython-314.opt-1.pyc
/usr/lib/python3.14/site-packages/bioframe/io/__pycache__/assembly.cpython-314.pyc
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/usr/lib/python3.14/site-packages/bioframe/io/__pycache__/bed.cpython-314.pyc
/usr/lib/python3.14/site-packages/bioframe/io/__pycache__/fileops.cpython-314.opt-1.pyc
/usr/lib/python3.14/site-packages/bioframe/io/__pycache__/fileops.cpython-314.pyc
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/usr/lib/python3.14/site-packages/bioframe/io/__pycache__/__init__.cpython-314.pyc
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/usr/lib/python3.14/site-packages/bioframe/io/__pycache__/resources.cpython-314.pyc
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/usr/lib/python3.14/site-packages/bioframe/io/resources.py
/usr/lib/python3.14/site-packages/bioframe/io/schemas.py
/usr/lib/python3.14/site-packages/bioframe/ops.py
/usr/lib/python3.14/site-packages/bioframe/__pycache__
/usr/lib/python3.14/site-packages/bioframe/__pycache__/extras.cpython-314.opt-1.pyc
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/usr/lib/python3.14/site-packages/bioframe/__pycache__/__init__.cpython-314.opt-1.pyc
/usr/lib/python3.14/site-packages/bioframe/__pycache__/__init__.cpython-314.pyc
/usr/lib/python3.14/site-packages/bioframe/__pycache__/ops.cpython-314.opt-1.pyc
/usr/lib/python3.14/site-packages/bioframe/__pycache__/ops.cpython-314.pyc
/usr/lib/python3.14/site-packages/bioframe/__pycache__/vis.cpython-314.opt-1.pyc
/usr/lib/python3.14/site-packages/bioframe/__pycache__/vis.cpython-314.pyc
/usr/lib/python3.14/site-packages/bioframe/sandbox
/usr/lib/python3.14/site-packages/bioframe/sandbox/clients.py
/usr/lib/python3.14/site-packages/bioframe/sandbox/gtf_io.py
/usr/lib/python3.14/site-packages/bioframe/sandbox/parquet_io.py
/usr/lib/python3.14/site-packages/bioframe/sandbox/__pycache__
/usr/lib/python3.14/site-packages/bioframe/sandbox/__pycache__/clients.cpython-314.opt-1.pyc
/usr/lib/python3.14/site-packages/bioframe/sandbox/__pycache__/clients.cpython-314.pyc
/usr/lib/python3.14/site-packages/bioframe/sandbox/__pycache__/gtf_io.cpython-314.opt-1.pyc
/usr/lib/python3.14/site-packages/bioframe/sandbox/__pycache__/gtf_io.cpython-314.pyc
/usr/lib/python3.14/site-packages/bioframe/sandbox/__pycache__/parquet_io.cpython-314.opt-1.pyc
/usr/lib/python3.14/site-packages/bioframe/sandbox/__pycache__/parquet_io.cpython-314.pyc
/usr/lib/python3.14/site-packages/bioframe/vis.py
/usr/share/doc/python3-bioframe
/usr/share/doc/python3-bioframe/CHANGES.md
/usr/share/doc/python3-bioframe/CITATION.cff
/usr/share/doc/python3-bioframe/CONTRIBUTING.md
/usr/share/doc/python3-bioframe/README.md

Field source: Fedora 43 Everything x86_64 revision 43-everything-x86_64:eb1d8634a798b5cfcef64b0114711f431f2cd186b55cce902f1883a32c6ff4f2

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Versioni, suite e repository

Ogni riga è metadato dell'indice pacchetti per una versione, architettura, suite e repository. Nomi, URL e dimensioni arrivano dalla fonte; un link è un punto di recupero mutabile, non una redistribuzione OpenFactory.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
0.8.0-7.fc43	43 / everything	noarch	Fedora 43 · Everything · x86_64	220 KiB	1.0 MiB	Packages/p/python3-bioframe-0.8.0-7.fc43.noarch.rpm
0.8.0-7.fc43	43 / everything	noarch	Fedora 43 · Everything · aarch64	220 KiB	1.0 MiB	Packages/p/python3-bioframe-0.8.0-7.fc43.noarch.rpm

Field source: Fedora 43 Everything x86_64 revision 43-everything-x86_64:eb1d8634a798b5cfcef64b0114711f431f2cd186b55cce902f1883a32c6ff4f2

Checksum e date di osservazione

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

0.8.0-7.fc43 / noarchObserved Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 456bcea790383d66f5b367c3c330f4f5c467d9767b1e84c0c51dc00f24415a17

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '456bcea790383d66f5b367c3c330f4f5c467d9767b1e84c0c51dc00f24415a17' 'python3-bioframe-0.8.0-7.fc43.noarch.rpm' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Fedora 43 Everything x86_64 revision 43-everything-x86_64:eb1d8634a798b5cfcef64b0114711f431f2cd186b55cce902f1883a32c6ff4f2

0.8.0-7.fc43 / noarchObserved Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 456bcea790383d66f5b367c3c330f4f5c467d9767b1e84c0c51dc00f24415a17

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '456bcea790383d66f5b367c3c330f4f5c467d9767b1e84c0c51dc00f24415a17' 'python3-bioframe-0.8.0-7.fc43.noarch.rpm' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Fedora 43 Everything aarch64 revision 43-everything-aarch64:6431612747d987257399969298151d19cfe87ed26322be6987e7b00cd0ae66a2

Completezza del record

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 5/5
Source package or maintainer: 10/10

Recorded total: 100/100

Field source: Fedora 43 Everything aarch64 revision 43-everything-aarch64:6431612747d987257399969298151d19cfe87ed26322be6987e7b00cd0ae66a2, Fedora 43 Everything x86_64 revision 43-everything-x86_64:eb1d8634a798b5cfcef64b0114711f431f2cd186b55cce902f1883a32c6ff4f2. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Fonti e provenienza

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Fedora 43 Everything aarch64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision 43-everything-aarch64:6431612747d987257399969298151d19cfe87ed26322be6987e7b00cd0ae66a2
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://mirrors.fedoraproject.org/metalink?repo=fedora-43&arch=aarch64
Signed-object SHA-256
6c2a7b7225a6bd12acd5c95dcd0350a0a5929e195692ff68eb31db0ee6b9897b
Signer fingerprint
Not recorded
Keyring revision
RPM-GPG-KEY-fedora-43-primary
SHA-256 2b1449a082d3264dda8e18369f04e9ac4163bf3f8cb530b0783dc2ab064a08ec
Tool and policy
1
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: Not recorded
Expected SHA-256: Not recorded
Observed SHA-256: Not recorded
Result: match verified
Fedora 43 Everything x86_64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision 43-everything-x86_64:eb1d8634a798b5cfcef64b0114711f431f2cd186b55cce902f1883a32c6ff4f2
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://mirrors.fedoraproject.org/metalink?repo=fedora-43&arch=x86_64
Signed-object SHA-256
42c0002750de6066124693fff143f4854c1e29474d893f7e6a7616012d41338f
Signer fingerprint
Not recorded
Keyring revision
RPM-GPG-KEY-fedora-43-primary
SHA-256 2b1449a082d3264dda8e18369f04e9ac4163bf3f8cb530b0783dc2ab064a08ec
Tool and policy
1
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: Not recorded
Expected SHA-256: Not recorded
Observed SHA-256: Not recorded
Result: match verified