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Debian 13 (Trixie) native package

atac

genome assembly-to-assembly comparison

Packages / Debian 13 (Trixie) / science / atac

[Source: kmer]

Package: atac (0~20150903+r2013-9+b1)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [kmer.sourceforge.net]

Similar packages:

  • [kmer-examples]

    sample data for kmer suite of tools for DNA sequence analysis

  • [leaff]

    biological sequence library utilities and applications

  • [libkmer-dev]

    suite of tools for DNA sequence analysis (development lib)

  • [libmeryl-dev]

    in- and out-of-core kmer counting and utilities (development lib)

  • [meryl]

    in- and out-of-core kmer counting and utilities

  • [sim4db]

    batch spliced alignment of cDNA sequences to a target genome

genome assembly-to-assembly comparison

Other Packages Related to atac:

  • dep: [libc6] (>= 2.38)

    GNU C Library: Shared libraries

  • dep: [libgcc-s1] (>= 3.0)

    GCC support library

  • dep: [libstdc++6] (>= 5.2)

    GNU Standard C++ Library v3

  • dep: [python3] (<< 3.14)

    interactive high-level object-oriented language (default python3 version)

  • dep: [python3] (>= 3.13~)

    interactive high-level object-oriented language (default python3 version)

  • dep: [python3.13]

    Interactive high-level object-oriented language (version 3.13)

  • dep: [python3] [any]

    interactive high-level object-oriented language (default python3 version)

  • dep: [perl] [any]

    Larry Wall's Practical Extraction and Report Language

  • dep: [libfile-which-perl]

    Perl module for searching paths for executable programs

  • dep: [leaff]

    biological sequence library utilities and applications

  • dep: [meryl]

    in- and out-of-core kmer counting and utilities

  • dep: [gnuplot]

    Command-line driven interactive plotting program.

  • rec: [kmer-examples]

    sample data for kmer suite of tools for DNA sequence analysis

Download atac

ArchitecturePackage SizeInstalled SizeFiles
amd64379 KiB2.7 MiB[list of files]
arm64358 KiB3.3 MiB[list of files]

Шляхи файлів пакета (47)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

  • /usr/bin/atac
  • /usr/lib/atac/bin/AtacDriver.py
  • /usr/lib/atac/bin/cleanAtac
  • /usr/lib/atac/bin/clumpMaker
  • /usr/lib/atac/bin/coalesceMatches
  • /usr/lib/atac/bin/correctGaps
  • /usr/lib/atac/bin/extractSequence
  • /usr/lib/atac/bin/extractUnmapped
  • /usr/lib/atac/bin/gapShifter
  • /usr/lib/atac/bin/happy-clones-span-clumps
  • /usr/lib/atac/bin/heavychains
  • /usr/lib/atac/bin/lengthFilter
  • /usr/lib/atac/bin/makeplot.pl
  • /usr/lib/atac/bin/matchExtender
  • /usr/lib/atac/bin/mismatchCounter
  • /usr/lib/atac/bin/overlap
  • /usr/lib/atac/bin/projectFeatures
  • /usr/lib/atac/bin/seatac
  • /usr/lib/atac/bin/statsGenerator
  • /usr/lib/atac/bin/testAtac
  • /usr/lib/atac/bin/uniqueFilter
  • /usr/lib/atac/lib/AtacDriver.py
  • /usr/lib/atac/lib/AtacFile.py
  • /usr/lib/atac/lib/dedashMatches.py
  • /usr/lib/atac/lib/DNA.py
  • /usr/lib/atac/lib/fillIntraRunGaps.py
  • /usr/lib/atac/lib/filter-heavychains.so
  • /usr/lib/atac/lib/filter-nop.so
  • /usr/lib/atac/lib/halign.so
  • /usr/lib/atac/lib/IdxStore.py
  • /usr/lib/atac/lib/localAlignerInterface.so
  • /usr/lib/atac/lib/MatchRecord.py
  • /usr/lib/atac/lib/mkstats.py
  • /usr/lib/atac/lib/MyFile.py
  • /usr/lib/atac/lib/PerfectRuns.py
  • /usr/lib/atac/lib/squeezeIntraRunGaps.py
  • /usr/lib/atac/lib/TrimMatchOverlaps.py
  • /usr/lib/atac/lib/UniqueFilter.py
  • /usr/share/doc/atac/atac-unit-test
  • /usr/share/doc/atac/changelog.Debian.amd64.gz
  • /usr/share/doc/atac/changelog.Debian.arm64.gz
  • /usr/share/doc/atac/changelog.Debian.gz
  • /usr/share/doc/atac/copyright
  • /usr/share/doc/atac/README.atac
  • /usr/share/doc/atac/README.test
  • /usr/share/man/man1/atac.1.gz
  • /usr/share/python3/runtime.d/atac.rtupdate

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Використати цей пакет

OpenFactory може завантажити цю операційну систему у віртуальній машині браузера або почати збірку образу з рідною назвою пакета з цього запису.

Спробувати Debian 13 (Trixie) у браузеріЗібрати образ, що містить atac

Версії, набори та репозиторії

Кожен рядок: метадані індексу пакетів для однієї версії, архітектури, набору й репозиторію. Назви, URL і розміри зі джерела; посилання є змінним місцем отримання, не перерозповсюдженням OpenFactory.

VersionReleaseArchitectureRepositoryPackage sizeInstalled sizePublisher repository artifact
0~20150903+r2013-9+b1trixie / mainamd64Debian 13 · main · amd64379 KiB2.7 MiBpool/main/k/kmer/atac_0~20150903+r2013-9+b1_amd64.deb
0~20150903+r2013-9+b1trixie / mainarm64Debian 13 · main · arm64358 KiB3.3 MiBpool/main/k/kmer/atac_0~20150903+r2013-9+b1_arm64.deb

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Контрольні суми й дати спостереження

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

0~20150903+r2013-9+b1 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: ae25098799ada1148a279156138aa133fc52880330c19c1edf70f4d4c3976281

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' 'ae25098799ada1148a279156138aa133fc52880330c19c1edf70f4d4c3976281' 'atac_0~20150903+r2013-9+b1_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

0~20150903+r2013-9+b1 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: c44ba1b6fa4cadb1c6f3a8b652a586f40aeb1004ee7c88179a38cd7724a939ae

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' 'c44ba1b6fa4cadb1c6f3a8b652a586f40aeb1004ee7c88179a38cd7724a939ae' 'atac_0~20150903+r2013-9+b1_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Повнота запису каталогу

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description
25/25
Artifact path and source digest
25/25
Dependency metadata
15/15
Package-file index
15/15
Homepage
5/5
License text
0/5
Source package or maintainer
10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Джерела та походження

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

  • Debian 13 (Trixie) main amd64Sep 1, 2026

    Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: main/binary-amd64/Packages.xz
    Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
    Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
    Result: match verified

  • Debian 13 (Trixie) main arm64Sep 1, 2026

    Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: main/binary-arm64/Packages.xz
    Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
    Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
    Result: match verified