Debian 13 (Trixie) native package

iva

iterative virus sequence assembler

Packages / Debian 13 (Trixie) / science / iva

Package: iva (1.0.11+ds-6)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [github.com]

iterative virus sequence assembler

Other Packages Related to iva:

dep: [fastaq]
FASTA and FASTQ file manipulation tools
dep: [python3-networkx]
tool to create, manipulate and study complex networks (Python3)
dep: [python3-packaging]
core utilities for python3 packages
dep: [python3-pysam]
interface for the SAM/BAM sequence alignment and mapping format (Python 3)
dep: [python3] [any]
interactive high-level object-oriented language (default python3 version)
dep: [perl] [any]
Larry Wall's Practical Extraction and Report Language
dep: [kmc]
count kmers in genomic sequences
dep: [mummer]
Efficient sequence alignment of full genomes
dep: [smalt]
Sequence Mapping and Alignment Tool
dep: [samtools]
processing sequence alignments in SAM, BAM and CRAM formats
dep: [python3-numpy]
Python library for numerical computations (Python 3)
dep: [default-jre-headless]
Standard Java or Java compatible Runtime (headless)

rec: [r-base-core]
GNU R core of statistical computation and graphics system
rec: [bioperl]
Perl tools for computational molecular biology
rec: [trimmomatic]
flexible read trimming tool for Illumina NGS data

Download iva

Architecture	Package Size	Installed Size	Files
amd64	8.2 MiB	8.6 MiB	[list of files]
arm64	8.2 MiB	8.6 MiB	[list of files]

Шляхи файлів пакета (65)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/iva
/usr/bin/iva_qc
/usr/bin/iva_qc_make_db
/usr/lib/python3/dist-packages/iva-1.0.9.egg-info/dependency_links.txt
/usr/lib/python3/dist-packages/iva-1.0.9.egg-info/PKG-INFO
/usr/lib/python3/dist-packages/iva-1.0.9.egg-info/requires.txt
/usr/lib/python3/dist-packages/iva-1.0.9.egg-info/top_level.txt
/usr/lib/python3/dist-packages/iva/assembly.py
/usr/lib/python3/dist-packages/iva/common.py
/usr/lib/python3/dist-packages/iva/contig.py
/usr/lib/python3/dist-packages/iva/contig_trim.py
/usr/lib/python3/dist-packages/iva/edge.py
/usr/lib/python3/dist-packages/iva/egg_extract.py
/usr/lib/python3/dist-packages/iva/external_progs.py
/usr/lib/python3/dist-packages/iva/gage/colsum.pl
/usr/lib/python3/dist-packages/iva/gage/getCorrectnessStats.sh
/usr/lib/python3/dist-packages/iva/gage/GetFastaStats$ContigAt.class
/usr/lib/python3/dist-packages/iva/gage/GetFastaStats.class
/usr/lib/python3/dist-packages/iva/gage/GetFastaStats.java
/usr/lib/python3/dist-packages/iva/gage/getMummerStats.sh
/usr/lib/python3/dist-packages/iva/gage/getScaffoldStats$Scaffold.class
/usr/lib/python3/dist-packages/iva/gage/getScaffoldStats.class
/usr/lib/python3/dist-packages/iva/gage/getScaffoldStats.java
/usr/lib/python3/dist-packages/iva/gage/SizeFasta.class
/usr/lib/python3/dist-packages/iva/gage/SizeFasta.java
/usr/lib/python3/dist-packages/iva/gage/SplitFastaByLetter.class
/usr/lib/python3/dist-packages/iva/gage/SplitFastaByLetter.java
/usr/lib/python3/dist-packages/iva/gage/Utils$Pair.class
/usr/lib/python3/dist-packages/iva/gage/Utils$ToProtein.class
/usr/lib/python3/dist-packages/iva/gage/Utils$Translate.class
/usr/lib/python3/dist-packages/iva/gage/Utils.class
/usr/lib/python3/dist-packages/iva/gage/Utils.java
/usr/lib/python3/dist-packages/iva/graph.py
/usr/lib/python3/dist-packages/iva/__init__.py
/usr/lib/python3/dist-packages/iva/kcount.py
/usr/lib/python3/dist-packages/iva/kmers.py
/usr/lib/python3/dist-packages/iva/kraken.py
/usr/lib/python3/dist-packages/iva/mapping.py
/usr/lib/python3/dist-packages/iva/mummer.py
/usr/lib/python3/dist-packages/iva/qc_external.py
/usr/lib/python3/dist-packages/iva/qc.py
/usr/lib/python3/dist-packages/iva/ratt/embl2gff.pl
/usr/lib/python3/dist-packages/iva/ratt/genbank2embl.pl
/usr/lib/python3/dist-packages/iva/ratt/main.ratt.pl
/usr/lib/python3/dist-packages/iva/ratt/ratt.config
/usr/lib/python3/dist-packages/iva/ratt/ratt.config.hiv
/usr/lib/python3/dist-packages/iva/ratt/ratt_correction.pm
/usr/lib/python3/dist-packages/iva/ratt/start.ratt.sh
/usr/lib/python3/dist-packages/iva/read_trim/adapters.fasta
/usr/lib/python3/dist-packages/iva/read_trim.py
/usr/lib/python3/dist-packages/iva/seed_processor.py
/usr/lib/python3/dist-packages/iva/seed.py
/usr/lib/python3/dist-packages/iva/test_data_runner.py
/usr/lib/python3/dist-packages/iva/test_run_data/hiv_pcr_primers.fa
/usr/lib/python3/dist-packages/iva/test_run_data/iva_contigs_no_trimmomatic.fasta
/usr/lib/python3/dist-packages/iva/test_run_data/iva_contigs_with_trimmomatic.fasta
/usr/lib/python3/dist-packages/iva/test_run_data/reads_1.fq.gz
/usr/lib/python3/dist-packages/iva/test_run_data/reads_2.fq.gz
/usr/lib/python3/dist-packages/iva/test_run_data/reference.fasta
/usr/share/doc/iva/changelog.Debian.gz
/usr/share/doc/iva/changelog.gz
/usr/share/doc/iva/copyright
/usr/share/man/man1/iva.1.gz
/usr/share/man/man1/iva_qc.1.gz
/usr/share/man/man1/iva_qc_make_db.1.gz

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Використати цей пакет

OpenFactory може завантажити цю операційну систему у віртуальній машині браузера або почати збірку образу з рідною назвою пакета з цього запису.

Спробувати Debian 13 (Trixie) у браузері Зібрати образ, що містить iva

Версії, набори та репозиторії

Кожен рядок: метадані індексу пакетів для однієї версії, архітектури, набору й репозиторію. Назви, URL і розміри зі джерела; посилання є змінним місцем отримання, не перерозповсюдженням OpenFactory.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
1.0.11+ds-6	trixie / main	amd64	Debian 13 · main · amd64	8.2 MiB	8.6 MiB	pool/main/i/iva/iva_1.0.11+ds-6_amd64.deb
1.0.11+ds-6	trixie / main	arm64	Debian 13 · main · arm64	8.2 MiB	8.6 MiB	pool/main/i/iva/iva_1.0.11+ds-6_arm64.deb

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Контрольні суми й дати спостереження

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

1.0.11+ds-6 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: dfc79c21433530b4e62523cb0e4ac77efd6c8f4ac8d4ba907fdc08875f8cfd93

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' 'dfc79c21433530b4e62523cb0e4ac77efd6c8f4ac8d4ba907fdc08875f8cfd93' 'iva_1.0.11+ds-6_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

1.0.11+ds-6 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 797438e85b798ff71d300220475f382abac33021e25f973abab27b66c013a2a1

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '797438e85b798ff71d300220475f382abac33021e25f973abab27b66c013a2a1' 'iva_1.0.11+ds-6_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Повнота запису каталогу

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Джерела та походження

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 13 (Trixie) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Result: match verified
Debian 13 (Trixie) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Result: match verified