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Debian 13 (Trixie) native package

r-bioc-deseq2

R package for RNA-Seq Differential Expression Analysis

Packages / Debian 13 (Trixie) / gnu-r / r-bioc-deseq2

Package: r-bioc-deseq2 (1.46.0+dfsg-2)

Maintainers:

Debian R Packages Maintainers

External Resources:

Homepage: [bioconductor.org]

R package for RNA-Seq Differential Expression Analysis

Other Packages Related to r-bioc-deseq2:

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  • dep: [r-bioc-iranges]

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  • dep: [r-bioc-genomicranges]

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  • dep: [r-bioc-summarizedexperiment] (>= 1.1.6)

    BioConductor assay container

  • dep: [r-bioc-biocgenerics] (>= 0.7.5)

    generic functions for Bioconductor

  • dep: [r-bioc-biobase]

    base functions for Bioconductor

  • dep: [r-bioc-biocparallel]

    BioConductor facilities for parallel evaluation

  • dep: [r-cran-matrixstats]

    GNU R methods that apply to rows and columns of a matrix

  • dep: [r-cran-locfit]

    GNU R local regression, likelihood and density estimation

  • dep: [r-cran-ggplot2] (>= 3.4.0)

    implementation of the Grammar of Graphics

  • dep: [r-cran-rcpp] (>= 0.11.0)

    GNU R package for Seamless R and C++ Integration

  • dep: [r-bioc-matrixgenerics]

    S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects

  • dep: [r-cran-rcpparmadillo]

    GNU R package for Armadillo C++ linear algebra library

  • dep: [libblas3]

    Basic Linear Algebra Reference implementations, shared library

  • dep: libblas.so.3

    Package not available

  • dep: [libc6] (>= 2.29)

    GNU C Library: Shared libraries

  • dep: [libgcc-s1] (>= 3.0)

    GCC support library

  • dep: [liblapack3]

    Library of linear algebra routines 3 - shared version

  • dep: liblapack.so.3

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  • dep: [libstdc++6] (>= 14)

    GNU Standard C++ Library v3

Download r-bioc-deseq2

ArchitecturePackage SizeInstalled SizeFiles
amd641.2 MiB1.7 MiB[list of files]
arm641.2 MiB1.7 MiB[list of files]

Шляхи файлів пакета (37)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

  • /usr/lib/R/site-library/DESeq2/CITATION
  • /usr/lib/R/site-library/DESeq2/DESCRIPTION
  • /usr/lib/R/site-library/DESeq2/doc/DESeq2.R
  • /usr/lib/R/site-library/DESeq2/doc/DESeq2.Rmd
  • /usr/lib/R/site-library/DESeq2/doc/index.html
  • /usr/lib/R/site-library/DESeq2/extdata/singleCellTab.csv
  • /usr/lib/R/site-library/DESeq2/help/aliases.rds
  • /usr/lib/R/site-library/DESeq2/help/AnIndex
  • /usr/lib/R/site-library/DESeq2/help/DESeq2.rdb
  • /usr/lib/R/site-library/DESeq2/help/DESeq2.rdx
  • /usr/lib/R/site-library/DESeq2/help/paths.rds
  • /usr/lib/R/site-library/DESeq2/html/00Index.html
  • /usr/lib/R/site-library/DESeq2/html/R.css
  • /usr/lib/R/site-library/DESeq2/INDEX
  • /usr/lib/R/site-library/DESeq2/libs/DESeq2.so
  • /usr/lib/R/site-library/DESeq2/Meta/features.rds
  • /usr/lib/R/site-library/DESeq2/Meta/hsearch.rds
  • /usr/lib/R/site-library/DESeq2/Meta/links.rds
  • /usr/lib/R/site-library/DESeq2/Meta/nsInfo.rds
  • /usr/lib/R/site-library/DESeq2/Meta/package.rds
  • /usr/lib/R/site-library/DESeq2/Meta/Rd.rds
  • /usr/lib/R/site-library/DESeq2/Meta/vignette.rds
  • /usr/lib/R/site-library/DESeq2/NAMESPACE
  • /usr/lib/R/site-library/DESeq2/NEWS
  • /usr/lib/R/site-library/DESeq2/R/DESeq2
  • /usr/lib/R/site-library/DESeq2/R/DESeq2.rdb
  • /usr/lib/R/site-library/DESeq2/R/DESeq2.rdx
  • /usr/lib/R/site-library/DESeq2/script/icobra_benchmarks.R
  • /usr/lib/R/site-library/DESeq2/script/icobra_pkg_versions.txt
  • /usr/lib/R/site-library/DESeq2/script/icobra.png
  • /usr/lib/R/site-library/DESeq2/script/makeSim.R
  • /usr/lib/R/site-library/DESeq2/script/runScripts.R
  • /usr/lib/R/site-library/DESeq2/script/testsuite.Rmd
  • /usr/lib/R/site-library/DESeq2/script/vst.nb
  • /usr/lib/R/site-library/DESeq2/script/vst.pdf
  • /usr/share/doc/r-bioc-deseq2/changelog.Debian.gz
  • /usr/share/doc/r-bioc-deseq2/copyright

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Використати цей пакет

OpenFactory може завантажити цю операційну систему у віртуальній машині браузера або почати збірку образу з рідною назвою пакета з цього запису.

Спробувати Debian 13 (Trixie) у браузеріЗібрати образ, що містить r-bioc-deseq2

Версії, набори та репозиторії

Кожен рядок: метадані індексу пакетів для однієї версії, архітектури, набору й репозиторію. Назви, URL і розміри зі джерела; посилання є змінним місцем отримання, не перерозповсюдженням OpenFactory.

VersionReleaseArchitectureRepositoryPackage sizeInstalled sizePublisher repository artifact
1.46.0+dfsg-2trixie / mainamd64Debian 13 · main · amd641.2 MiB1.7 MiBpool/main/r/r-bioc-deseq2/r-bioc-deseq2_1.46.0+dfsg-2_amd64.deb
1.46.0+dfsg-2trixie / mainarm64Debian 13 · main · arm641.2 MiB1.7 MiBpool/main/r/r-bioc-deseq2/r-bioc-deseq2_1.46.0+dfsg-2_arm64.deb

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Контрольні суми й дати спостереження

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

1.46.0+dfsg-2 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 895f7b6de77197987b20271b6d99435e7ad45990de2ada60a886007a38650395

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' '895f7b6de77197987b20271b6d99435e7ad45990de2ada60a886007a38650395' 'r-bioc-deseq2_1.46.0+dfsg-2_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

1.46.0+dfsg-2 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: c3e0959cc47560994bffd3885def8d508b20f9f9647fa558843d8de91853a74c

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' 'c3e0959cc47560994bffd3885def8d508b20f9f9647fa558843d8de91853a74c' 'r-bioc-deseq2_1.46.0+dfsg-2_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Повнота запису каталогу

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description
25/25
Artifact path and source digest
25/25
Dependency metadata
15/15
Package-file index
15/15
Homepage
5/5
License text
0/5
Source package or maintainer
10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Джерела та походження

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

  • Debian 13 (Trixie) main amd64Sep 1, 2026

    Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: main/binary-amd64/Packages.xz
    Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
    Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
    Result: match verified

  • Debian 13 (Trixie) main arm64Sep 1, 2026

    Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: main/binary-arm64/Packages.xz
    Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
    Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
    Result: match verified

r-bioc-deseq2 Package for Debian 13 (Trixie) | OpenFactory