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Debian 13 (Trixie) native package

r-bioc-oligo

Preprocessing tools for oligonucleotide arrays

Packages / Debian 13 (Trixie) / gnu-r / r-bioc-oligo

Package: r-bioc-oligo (1.70.0+ds-3)

Maintainers:

Debian R Packages Maintainers

External Resources:

Homepage: [bioconductor.org]

Preprocessing tools for oligonucleotide arrays

Other Packages Related to r-bioc-oligo:

  • dep: r-api-4.0

    Package not available

  • dep: r-api-bioc-3.20

    Package not available

  • dep: [r-bioc-biocgenerics] (>= 0.13.11)

    generic functions for Bioconductor

  • dep: [r-bioc-oligoclasses] (>= 1.29.6)

    Classes for high-throughput arrays supported by oligo and crlmm

  • dep: [r-bioc-biobase] (>= 2.27.3)

    base functions for Bioconductor

  • dep: [r-bioc-biostrings] (>= 2.35.12)

    GNU R string objects representing biological sequences

  • dep: [r-bioc-affyio] (>= 1.35.0)

    BioConductor tools for parsing Affymetrix data files

  • dep: [r-bioc-affxparser] (>= 1.39.4)

    Affymetrix File Parsing SDK

  • dep: [r-cran-dbi] (>= 0.3.1)

    GNU R package providing a generic database interface

  • dep: [r-cran-ff]

    Memory-Efficient Fast-Access Storage of Large Data

  • dep: [r-bioc-preprocesscore] (>= 1.29.0)

    BioConductor collection of pre-processing functions

  • dep: [r-cran-rsqlite] (>= 1.0.0)

    Database Interface R driver for SQLite

  • dep: [r-bioc-zlibbioc]

    (Virtual) zlibbioc Bioconductor package

  • dep: [libc6] (>= 2.38)

    GNU C Library: Shared libraries

  • dep: [zlib1g] (>= 1:1.1.4)

    compression library - runtime

  • sug: [r-bioc-genefilter]

    methods for filtering genes from microarray experiments

  • sug: [r-bioc-limma]

    linear models for microarray data

  • sug: [r-cran-rcolorbrewer]

    GNU R package providing suitable color palettes

  • sug: [r-bioc-biocstyle]

    standard styles for vignettes and other Bioconductor documents

  • sug: [r-cran-knitr]

    GNU R package for dynamic report generation using Literate Programming

  • sug: [r-cran-runit]

    GNU R package providing unit testing framework

  • sug: [r-bioc-biomart]

    GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)

  • sug: [r-bioc-annotationdbi]

    GNU R Annotation Database Interface for BioConductor

  • sug: [r-cran-rcurl]

    GNU R General network (HTTP/FTP/...) client interface

Download r-bioc-oligo

ArchitecturePackage SizeInstalled SizeFiles
amd64907 KiB1.3 MiB[list of files]
arm64906 KiB1.3 MiB[list of files]

Шляхи файлів пакета (37)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

  • /usr/lib/R/site-library/oligo/CITATION
  • /usr/lib/R/site-library/oligo/DESCRIPTION
  • /usr/lib/R/site-library/oligo/doc/index.html
  • /usr/lib/R/site-library/oligo/doc/oug.Rnw
  • /usr/lib/R/site-library/oligo/help/aliases.rds
  • /usr/lib/R/site-library/oligo/help/AnIndex
  • /usr/lib/R/site-library/oligo/help/oligo.rdb
  • /usr/lib/R/site-library/oligo/help/oligo.rdx
  • /usr/lib/R/site-library/oligo/help/paths.rds
  • /usr/lib/R/site-library/oligo/html/00Index.html
  • /usr/lib/R/site-library/oligo/html/R.css
  • /usr/lib/R/site-library/oligo/INDEX
  • /usr/lib/R/site-library/oligo/libs/oligo.so
  • /usr/lib/R/site-library/oligo/Meta/features.rds
  • /usr/lib/R/site-library/oligo/Meta/hsearch.rds
  • /usr/lib/R/site-library/oligo/Meta/links.rds
  • /usr/lib/R/site-library/oligo/Meta/nsInfo.rds
  • /usr/lib/R/site-library/oligo/Meta/package.rds
  • /usr/lib/R/site-library/oligo/Meta/Rd.rds
  • /usr/lib/R/site-library/oligo/Meta/vignette.rds
  • /usr/lib/R/site-library/oligo/NAMESPACE
  • /usr/lib/R/site-library/oligo/NEWS.Rd
  • /usr/lib/R/site-library/oligo/R/oligo
  • /usr/lib/R/site-library/oligo/R/oligo.rdb
  • /usr/lib/R/site-library/oligo/R/oligo.rdx
  • /usr/lib/R/site-library/oligo/scripts/FrameworkPreprocessing.bib
  • /usr/lib/R/site-library/oligo/scripts/getVersions.sh
  • /usr/lib/R/site-library/oligo/scripts/oligoVignette.bib
  • /usr/lib/R/site-library/oligo/scripts/oug.Rnw
  • /usr/lib/R/site-library/oligo/scripts/primer.Rnw
  • /usr/lib/R/site-library/oligo/unitTests/fids_ref0.rda
  • /usr/lib/R/site-library/oligo/unitTests/gen_selector0.R
  • /usr/lib/R/site-library/oligo/unitTests/i0.rda
  • /usr/lib/R/site-library/oligo/unitTests/rma_ref0.rda
  • /usr/share/doc/r-bioc-oligo/changelog.Debian.gz
  • /usr/share/doc/r-bioc-oligo/changelog.gz
  • /usr/share/doc/r-bioc-oligo/copyright

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Використати цей пакет

OpenFactory може завантажити цю операційну систему у віртуальній машині браузера або почати збірку образу з рідною назвою пакета з цього запису.

Спробувати Debian 13 (Trixie) у браузеріЗібрати образ, що містить r-bioc-oligo

Версії, набори та репозиторії

Кожен рядок: метадані індексу пакетів для однієї версії, архітектури, набору й репозиторію. Назви, URL і розміри зі джерела; посилання є змінним місцем отримання, не перерозповсюдженням OpenFactory.

VersionReleaseArchitectureRepositoryPackage sizeInstalled sizePublisher repository artifact
1.70.0+ds-3trixie / mainamd64Debian 13 · main · amd64907 KiB1.3 MiBpool/main/r/r-bioc-oligo/r-bioc-oligo_1.70.0+ds-3_amd64.deb
1.70.0+ds-3trixie / mainarm64Debian 13 · main · arm64906 KiB1.3 MiBpool/main/r/r-bioc-oligo/r-bioc-oligo_1.70.0+ds-3_arm64.deb

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Контрольні суми й дати спостереження

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

1.70.0+ds-3 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 2254d1a2624ad08fb7e5bcaf777c96c24ab01c8f80b0a35062fb9e3f2af73dda

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' '2254d1a2624ad08fb7e5bcaf777c96c24ab01c8f80b0a35062fb9e3f2af73dda' 'r-bioc-oligo_1.70.0+ds-3_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

1.70.0+ds-3 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: bf58c54c1323528b661ee12762dc9f4e83f75152297af61396335060ad6df75c

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' 'bf58c54c1323528b661ee12762dc9f4e83f75152297af61396335060ad6df75c' 'r-bioc-oligo_1.70.0+ds-3_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Повнота запису каталогу

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description
25/25
Artifact path and source digest
25/25
Dependency metadata
15/15
Package-file index
15/15
Homepage
5/5
License text
0/5
Source package or maintainer
10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Джерела та походження

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

  • Debian 13 (Trixie) main amd64Sep 1, 2026

    Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: main/binary-amd64/Packages.xz
    Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
    Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
    Result: match verified

  • Debian 13 (Trixie) main arm64Sep 1, 2026

    Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: main/binary-arm64/Packages.xz
    Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
    Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
    Result: match verified

r-bioc-oligo Package for Debian 13 (Trixie) | OpenFactory