Linux workstation

Debian 13 (Trixie) native package

rsem

RNA-Seq by Expectation-Maximization

Packages / Debian 13 (Trixie) / science / rsem

[Source: rsem]

Package: rsem (1.3.3+dfsg-3+b3)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [deweylab.github.io]

RNA-Seq by Expectation-Maximization

Other Packages Related to rsem:

  • dep: [libc6] (>= 2.38)

    GNU C Library: Shared libraries

  • dep: [libgcc-s1] (>= 3.0)

    GCC support library

  • dep: [libhts3t64] (>= 1.17)

    C library for high-throughput sequencing data formats

  • dep: [libstdc++6] (>= 13.1)

    GNU Standard C++ Library v3

  • dep: [perl] [any]

    Larry Wall's Practical Extraction and Report Language

  • dep: [r-base-core]

    GNU R core of statistical computation and graphics system

  • dep: [bowtie]

    Ultrafast memory-efficient short read aligner

  • dep: [bowtie2]

    ultrafast memory-efficient short read aligner

  • dep: [python3]

    interactive high-level object-oriented language (default python3 version)

  • sug: [r-bioc-ebseq]

    R package for RNA-Seq Differential Expression Analysis

  • sug: [hisat2]

    graph-based alignment of short nucleotide reads to many genomes

Download rsem

ArchitecturePackage SizeInstalled SizeFiles
amd6434 MiB36 MiB[list of files]
arm6434 MiB36 MiB[list of files]

Шляхи файлів пакета (50)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

  • /usr/bin/convert-sam-for-rsem
  • /usr/bin/extract-transcript-to-gene-map-from-trinity
  • /usr/bin/rsem-bam2readdepth
  • /usr/bin/rsem-bam2wig
  • /usr/bin/rsem-build-read-index
  • /usr/bin/rsem-calculate-credibility-intervals
  • /usr/bin/rsem-calculate-expression
  • /usr/bin/rsem-control-fdr
  • /usr/bin/rsem-extract-reference-transcripts
  • /usr/bin/rsem-generate-data-matrix
  • /usr/bin/rsem-generate-ngvector
  • /usr/bin/rsem-gen-transcript-plots
  • /usr/bin/rsem-get-unique
  • /usr/bin/rsem-gff3-to-gtf
  • /usr/bin/rsem-parse-alignments
  • /usr/bin/rsem_perl_utils.pm
  • /usr/bin/rsem-plot-model
  • /usr/bin/rsem-plot-transcript-wiggles
  • /usr/bin/rsem-prepare-reference
  • /usr/bin/rsem-preref
  • /usr/bin/rsem-refseq-extract-primary-assembly
  • /usr/bin/rsem-run-em
  • /usr/bin/rsem-run-gibbs
  • /usr/bin/rsem-sam-validator
  • /usr/bin/rsem-scan-for-paired-end-reads
  • /usr/bin/rsem-simulate-reads
  • /usr/bin/rsem-synthesis-reference-transcripts
  • /usr/bin/rsem-tbam2gbam
  • /usr/share/doc/rsem/changelog.Debian.amd64.gz
  • /usr/share/doc/rsem/changelog.Debian.arm64.gz
  • /usr/share/doc/rsem/changelog.Debian.gz
  • /usr/share/doc/rsem/cnt_file_description.txt
  • /usr/share/doc/rsem/copyright
  • /usr/share/doc/rsem/examples/mouse_ref_building_from_transcripts.tar.gz
  • /usr/share/doc/rsem/model_file_description.txt.gz
  • /usr/share/doc/rsem/README.md.gz
  • /usr/share/doc/rsem/README.test
  • /usr/share/doc/rsem/run-unit-test
  • /usr/share/doc/rsem/WHAT_IS_NEW.gz
  • /usr/share/man/man1/convert-sam-for-rsem.1.gz
  • /usr/share/man/man1/rsem-bam2wig.1.gz
  • /usr/share/man/man1/rsem-calculate-expression.1.gz
  • /usr/share/man/man1/rsem-control-fdr.1.gz
  • /usr/share/man/man1/rsem-generate-ngvector.1.gz
  • /usr/share/man/man1/rsem-gff3-to-gtf.1.gz
  • /usr/share/man/man1/rsem-plot-transcript-wiggles.1.gz
  • /usr/share/man/man1/rsem-prepare-reference.1.gz
  • /usr/share/man/man1/rsem-run-ebseq.1.gz
  • /usr/share/man/man1/rsem-simulate-reads.1.gz
  • /usr/share/perl5/rsem_perl_utils.pm

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Використати цей пакет

OpenFactory може завантажити цю операційну систему у віртуальній машині браузера або почати збірку образу з рідною назвою пакета з цього запису.

Спробувати Debian 13 (Trixie) у браузеріЗібрати образ, що містить rsem

Версії, набори та репозиторії

Кожен рядок: метадані індексу пакетів для однієї версії, архітектури, набору й репозиторію. Назви, URL і розміри зі джерела; посилання є змінним місцем отримання, не перерозповсюдженням OpenFactory.

VersionReleaseArchitectureRepositoryPackage sizeInstalled sizePublisher repository artifact
1.3.3+dfsg-3+b3trixie / mainarm64Debian 13 · main · arm6434 MiB36 MiBpool/main/r/rsem/rsem_1.3.3+dfsg-3+b3_arm64.deb
1.3.3+dfsg-3+b1trixie / mainamd64Debian 13 · main · amd6434 MiB36 MiBpool/main/r/rsem/rsem_1.3.3+dfsg-3+b1_amd64.deb

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Контрольні суми й дати спостереження

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

1.3.3+dfsg-3+b3 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: fdb7a971a402d0b804e1dc26d5e2429873fda7c173a786aed89e28eee9921625

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' 'fdb7a971a402d0b804e1dc26d5e2429873fda7c173a786aed89e28eee9921625' 'rsem_1.3.3+dfsg-3+b3_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

1.3.3+dfsg-3+b1 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 26e8432f8cc3982e7318e67069b578d88c25e9d27984c06c793f9b142fb52584

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' '26e8432f8cc3982e7318e67069b578d88c25e9d27984c06c793f9b142fb52584' 'rsem_1.3.3+dfsg-3+b1_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Повнота запису каталогу

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description
25/25
Artifact path and source digest
25/25
Dependency metadata
15/15
Package-file index
15/15
Homepage
5/5
License text
0/5
Source package or maintainer
10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Джерела та походження

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

  • Debian 13 (Trixie) main amd64Sep 1, 2026

    Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: main/binary-amd64/Packages.xz
    Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
    Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
    Result: match verified

  • Debian 13 (Trixie) main arm64Sep 1, 2026

    Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: main/binary-arm64/Packages.xz
    Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
    Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
    Result: match verified

rsem Package for Debian 13 (Trixie) | OpenFactory