Debian 13 (Trixie) native package

stacks

pipeline for building loci from short-read DNA sequences

Packages / Debian 13 (Trixie) / science / stacks

Package: stacks (2.68+dfsg-2)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [creskolab.uoregon.edu]

pipeline for building loci from short-read DNA sequences

Other Packages Related to stacks:

dep: [libc6] (>= 2.38)
GNU C Library: Shared libraries
dep: [libgcc-s1] (>= 3.0)
GCC support library
dep: [libgomp1] (>= 6)
GCC OpenMP (GOMP) support library
dep: [libhts3t64] (>= 1.17)
C library for high-throughput sequencing data formats
dep: [libstdc++6] (>= 14)
GNU Standard C++ Library v3
dep: [zlib1g] (>= 1:1.2.6)
compression library - runtime
dep: [samtools]
processing sequence alignments in SAM, BAM and CRAM formats
dep: [libdbi-perl]
Perl Database Interface (DBI)
dep: [bsdextrautils]
extra utilities from 4.4BSD-Lite
dep: [python3]
interactive high-level object-oriented language (default python3 version)

rec: [libspreadsheet-writeexcel-perl]
module to create Excel spreadsheets
rec: [littler]
GNU R scripting and command-line front-end -- transition package

sug: [gdb]
GNU Debugger

Download stacks

Architecture	Package Size	Installed Size	Files
amd64	1.2 MiB	6.0 MiB	[list of files]
arm64	1.0 MiB	5.7 MiB	[list of files]

Шляхи файлів пакета (49)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/stacks
/usr/libexec/debian-med/bin/clone_filter
/usr/libexec/debian-med/bin/cstacks
/usr/libexec/debian-med/bin/denovo_map
/usr/libexec/debian-med/bin/denovo_map.pl
/usr/libexec/debian-med/bin/gstacks
/usr/libexec/debian-med/bin/kmer_filter
/usr/libexec/debian-med/bin/phasedstacks
/usr/libexec/debian-med/bin/populations
/usr/libexec/debian-med/bin/process_radtags
/usr/libexec/debian-med/bin/process_shortreads
/usr/libexec/debian-med/bin/ref_map
/usr/libexec/debian-med/bin/ref_map.pl
/usr/libexec/debian-med/bin/sstacks
/usr/libexec/debian-med/bin/stacks-count-reads-per-sample-per-locus
/usr/libexec/debian-med/bin/stacks-dist-extract
/usr/libexec/debian-med/bin/stacks-gdb
/usr/libexec/debian-med/bin/stacks-hist2d-loci-samples-coverage
/usr/libexec/debian-med/bin/stacks-integrate-alignments
/usr/libexec/debian-med/bin/stacks-private-alleles
/usr/libexec/debian-med/bin/stacks-samtools-tview
/usr/libexec/debian-med/bin/tsv2bam
/usr/libexec/debian-med/bin/ustacks
/usr/libexec/stacks/bin/clone_filter
/usr/libexec/stacks/bin/cstacks
/usr/libexec/stacks/bin/denovo_map
/usr/libexec/stacks/bin/denovo_map.pl
/usr/libexec/stacks/bin/gstacks
/usr/libexec/stacks/bin/kmer_filter
/usr/libexec/stacks/bin/phasedstacks
/usr/libexec/stacks/bin/populations
/usr/libexec/stacks/bin/process_radtags
/usr/libexec/stacks/bin/process_shortreads
/usr/libexec/stacks/bin/ref_map
/usr/libexec/stacks/bin/ref_map.pl
/usr/libexec/stacks/bin/sstacks
/usr/libexec/stacks/bin/stacks-count-reads-per-sample-per-locus
/usr/libexec/stacks/bin/stacks-dist-extract
/usr/libexec/stacks/bin/stacks-gdb
/usr/libexec/stacks/bin/stacks-hist2d-loci-samples-coverage
/usr/libexec/stacks/bin/stacks-integrate-alignments
/usr/libexec/stacks/bin/stacks-private-alleles
/usr/libexec/stacks/bin/stacks-samtools-tview
/usr/libexec/stacks/bin/tsv2bam
/usr/libexec/stacks/bin/ustacks
/usr/share/doc/stacks/changelog.Debian.gz
/usr/share/doc/stacks/changelog.gz
/usr/share/doc/stacks/copyright
/usr/share/doc/stacks/README.Debian

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Використати цей пакет

OpenFactory може завантажити цю операційну систему у віртуальній машині браузера або почати збірку образу з рідною назвою пакета з цього запису.

Спробувати Debian 13 (Trixie) у браузері Зібрати образ, що містить stacks

Версії, набори та репозиторії

Кожен рядок: метадані індексу пакетів для однієї версії, архітектури, набору й репозиторію. Назви, URL і розміри зі джерела; посилання є змінним місцем отримання, не перерозповсюдженням OpenFactory.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
2.68+dfsg-2	trixie / main	amd64	Debian 13 · main · amd64	1.2 MiB	6.0 MiB	pool/main/s/stacks/stacks_2.68+dfsg-2_amd64.deb
2.68+dfsg-2	trixie / main	arm64	Debian 13 · main · arm64	1.0 MiB	5.7 MiB	pool/main/s/stacks/stacks_2.68+dfsg-2_arm64.deb

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Контрольні суми й дати спостереження

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

2.68+dfsg-2 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 66c76ef1091449dd587db49308579baf75eff3232bd9c27b95c1d4f487d18abd

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '66c76ef1091449dd587db49308579baf75eff3232bd9c27b95c1d4f487d18abd' 'stacks_2.68+dfsg-2_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

2.68+dfsg-2 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 4c6dcd815b4d8126107924d1183e56164bd55fe014511227d8fa6f05356f3628

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '4c6dcd815b4d8126107924d1183e56164bd55fe014511227d8fa6f05356f3628' 'stacks_2.68+dfsg-2_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Повнота запису каталогу

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Джерела та походження

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 13 (Trixie) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Result: match verified
Debian 13 (Trixie) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Result: match verified