Debian 13 (Trixie) native package

topp

set of programs implementing The OpenMS Proteomic Pipeline

Packages / Debian 13 (Trixie) / science / topp

[Source: openms]

Package: topp (2.6.0+cleaned1-4+b5)

Maintainers:

The Debichem Group

External Resources:

Homepage: [www.openms.de]

Similar packages:

[libopenms2.6.0]
library for LC/MS data management and analysis - runtime
[libopenms-dev]
library for LC/MS data management and analysis - dev files
[openms-common]
package for LC/MS data management and analysis - shared data
[openms-doc]
package for LC/MS data management and analysis - documentation

set of programs implementing The OpenMS Proteomic Pipeline

Other Packages Related to topp:

dep: [libc6] (>= 2.38)
GNU C Library: Shared libraries
dep: [libgcc-s1] (>= 3.0)
GCC support library
dep: [libgomp1] (>= 6)
GCC OpenMP (GOMP) support library
dep: [libopenms2.6.0] (= 2.6.0+cleaned1-4+b5)
library for LC/MS data management and analysis - runtime
dep: [libqt5core5t64] (>= 5.15.1)
Qt 5 core module
dep: [libqt5gui5t64] (>= 5.11.3)
Qt 5 GUI module
dep: [libqt5gui5-gles] (>= 5.11.3)
Qt 5 GUI module — OpenGL ES variant
dep: [libqt5widgets5t64] (>= 5.11.3)
Qt 5 widgets module
dep: [libstdc++6] (>= 14)
GNU Standard C++ Library v3
dep: [libxerces-c3.2t64]
validating XML parser library for C++
dep: [openms-common] (= 2.6.0+cleaned1-4)
package for LC/MS data management and analysis - shared data

sug: [openms-doc]
package for LC/MS data management and analysis - documentation

Download topp

Architecture	Package Size	Installed Size	Files
amd64	3.1 MiB	17 MiB	[list of files]
arm64	2.7 MiB	20 MiB	[list of files]

Шляхи файлів пакета (371)

Showing the first 250 sorted package-associated paths. Use file search to locate a specific path.

/usr/bin/AccurateMassSearch
/usr/bin/AssayGeneratorMetabo
/usr/bin/BaselineFilter
/usr/bin/ClusterMassTraces
/usr/bin/ClusterMassTracesByPrecursor
/usr/bin/CometAdapter
/usr/bin/CompNovo
/usr/bin/CompNovoCID
/usr/bin/ConsensusID
/usr/bin/ConsensusMapNormalizer
/usr/bin/CruxAdapter
/usr/bin/CVInspector
/usr/bin/DatabaseFilter
/usr/bin/DatabaseSuitability
/usr/bin/Decharger
/usr/bin/DecoyDatabase
/usr/bin/DeMeanderize
/usr/bin/Digestor
/usr/bin/DigestorMotif
/usr/bin/DTAExtractor
/usr/bin/EICExtractor
/usr/bin/Epifany
/usr/bin/ERPairFinder
/usr/bin/ExecutePipeline
/usr/bin/ExternalCalibration
/usr/bin/FalseDiscoveryRate
/usr/bin/FeatureFinderCentroided
/usr/bin/FeatureFinderIdentification
/usr/bin/FeatureFinderIsotopeWavelet
/usr/bin/FeatureFinderMetabo
/usr/bin/FeatureFinderMetaboIdent
/usr/bin/FeatureFinderMRM
/usr/bin/FeatureFinderMultiplex
/usr/bin/FeatureFinderSuperHirn
/usr/bin/FeatureLinkerLabeled
/usr/bin/FeatureLinkerUnlabeled
/usr/bin/FeatureLinkerUnlabeledKD
/usr/bin/FeatureLinkerUnlabeledQT
/usr/bin/FFEval
/usr/bin/FidoAdapter
/usr/bin/FileConverter
/usr/bin/FileFilter
/usr/bin/FileInfo
/usr/bin/FileMerger
/usr/bin/FuzzyDiff
/usr/bin/GenericWrapper
/usr/bin/GNPSExport
/usr/bin/HighResPrecursorMassCorrector
/usr/bin/IDConflictResolver
/usr/bin/IDDecoyProbability
/usr/bin/IDExtractor
/usr/bin/IDFileConverter
/usr/bin/IDFilter
/usr/bin/IDMapper
/usr/bin/IDMassAccuracy
/usr/bin/IDMerger
/usr/bin/IDPosteriorErrorProbability
/usr/bin/IDRipper
/usr/bin/IDRTCalibration
/usr/bin/IDScoreSwitcher
/usr/bin/IDSplitter
/usr/bin/ImageCreator
/usr/bin/InclusionExclusionListCreator
/usr/bin/INIFileEditor
/usr/bin/INIUpdater
/usr/bin/InspectAdapter
/usr/bin/InternalCalibration
/usr/bin/IsobaricAnalyzer
/usr/bin/LabeledEval
/usr/bin/LuciphorAdapter
/usr/bin/MapAlignerIdentification
/usr/bin/MapAlignerPoseClustering
/usr/bin/MapAlignerSpectrum
/usr/bin/MapAlignerTreeGuided
/usr/bin/MapNormalizer
/usr/bin/MapRTTransformer
/usr/bin/MapStatistics
/usr/bin/MaRaClusterAdapter
/usr/bin/MascotAdapter
/usr/bin/MascotAdapterOnline
/usr/bin/MassCalculator
/usr/bin/MassTraceExtractor
/usr/bin/MetaboliteAdductDecharger
/usr/bin/MetaboliteSpectralMatcher
/usr/bin/MetaProSIP
/usr/bin/MRMMapper
/usr/bin/MRMPairFinder
/usr/bin/MRMTransitionGroupPicker
/usr/bin/MSFraggerAdapter
/usr/bin/MSGFPlusAdapter
/usr/bin/MSSimulator
/usr/bin/MSstatsConverter
/usr/bin/MultiplexResolver
/usr/bin/MyriMatchAdapter
/usr/bin/MzMLSplitter
/usr/bin/MzTabExporter
/usr/bin/NoiseFilterGaussian
/usr/bin/NoiseFilterSGolay
/usr/bin/NovorAdapter
/usr/bin/NucleicAcidSearchEngine
/usr/bin/OMSSAAdapter
/usr/bin/OpenMSInfo
/usr/bin/OpenPepXL
/usr/bin/OpenPepXLLF
/usr/bin/OpenSwathAnalyzer
/usr/bin/OpenSwathAssayGenerator
/usr/bin/OpenSwathChromatogramExtractor
/usr/bin/OpenSwathConfidenceScoring
/usr/bin/OpenSwathDecoyGenerator
/usr/bin/OpenSwathDIAPreScoring
/usr/bin/OpenSwathFeatureXMLToTSV
/usr/bin/OpenSwathFileSplitter
/usr/bin/OpenSwathMzMLFileCacher
/usr/bin/OpenSwathRewriteToFeatureXML
/usr/bin/OpenSwathRTNormalizer
/usr/bin/OpenSwathWorkflow
/usr/bin/PeakPickerHiRes
/usr/bin/PeakPickerIterative
/usr/bin/PeakPickerWavelet
/usr/bin/PepNovoAdapter
/usr/bin/PeptideIndexer
/usr/bin/PercolatorAdapter
/usr/bin/PhosphoScoring
/usr/bin/PrecursorIonSelector
/usr/bin/PrecursorMassCorrector
/usr/bin/ProteinInference
/usr/bin/ProteinQuantifier
/usr/bin/ProteinResolver
/usr/bin/ProteomicsLFQ
/usr/bin/PSMFeatureExtractor
/usr/bin/PTModel
/usr/bin/PTPredict
/usr/bin/QCCalculator
/usr/bin/QCEmbedder
/usr/bin/QCExporter
/usr/bin/QCExtractor
/usr/bin/QCImporter
/usr/bin/QCMerger
/usr/bin/QCShrinker
/usr/bin/QualityControl
/usr/bin/Resampler
/usr/bin/RNADigestor
/usr/bin/RNAMassCalculator
/usr/bin/RNPxlSearch
/usr/bin/RNPxlXICFilter
/usr/bin/RTEvaluation
/usr/bin/RTModel
/usr/bin/RTPredict
/usr/bin/SeedListGenerator
/usr/bin/SemanticValidator
/usr/bin/SequenceCoverageCalculator
/usr/bin/SimpleSearchEngine
/usr/bin/SiriusAdapter
/usr/bin/SpecLibCreator
/usr/bin/SpecLibSearcher
/usr/bin/SpectraFilterBernNorm
/usr/bin/SpectraFilterMarkerMower
/usr/bin/SpectraFilterNLargest
/usr/bin/SpectraFilterNormalizer
/usr/bin/SpectraFilterParentPeakMower
/usr/bin/SpectraFilterScaler
/usr/bin/SpectraFilterSqrtMower
/usr/bin/SpectraFilterThresholdMower
/usr/bin/SpectraFilterWindowMower
/usr/bin/SpectraMerger
/usr/bin/SpectraSTSearchAdapter
/usr/bin/StaticModification
/usr/bin/SvmTheoreticalSpectrumGeneratorTrainer
/usr/bin/SwathWizard
/usr/bin/TargetedFileConverter
/usr/bin/TextExporter
/usr/bin/TICCalculator
/usr/bin/TOFCalibration
/usr/bin/TOPPAS
/usr/bin/TOPPView
/usr/bin/TransformationEvaluation
/usr/bin/XFDR
/usr/bin/XMLValidator
/usr/bin/XTandemAdapter
/usr/share/applications/TOPPAS.desktop
/usr/share/applications/TOPPView.desktop
/usr/share/doc/topp/changelog.Debian.amd64.gz
/usr/share/doc/topp/changelog.Debian.arm64.gz
/usr/share/doc/topp/changelog.Debian.gz
/usr/share/doc/topp/changelog.gz
/usr/share/doc/topp/copyright
/usr/share/lintian/overrides/topp
/usr/share/man/man1/AccurateMassSearch.1.gz
/usr/share/man/man1/AssayGeneratorMetabo.1.gz
/usr/share/man/man1/BaselineFilter.1.gz
/usr/share/man/man1/ClusterMassTraces.1.gz
/usr/share/man/man1/ClusterMassTracesByPrecursor.1.gz
/usr/share/man/man1/CometAdapter.1.gz
/usr/share/man/man1/CompNovo.1.gz
/usr/share/man/man1/CompNovoCID.1.gz
/usr/share/man/man1/ConsensusID.1.gz
/usr/share/man/man1/ConsensusMapNormalizer.1.gz
/usr/share/man/man1/CruxAdapter.1.gz
/usr/share/man/man1/CVInspector.1.gz
/usr/share/man/man1/DatabaseFilter.1.gz
/usr/share/man/man1/DatabaseSuitability.1.gz
/usr/share/man/man1/Decharger.1.gz
/usr/share/man/man1/DecoyDatabase.1.gz
/usr/share/man/man1/DeMeanderize.1.gz
/usr/share/man/man1/Digestor.1.gz
/usr/share/man/man1/DigestorMotif.1.gz
/usr/share/man/man1/DTAExtractor.1.gz
/usr/share/man/man1/EICExtractor.1.gz
/usr/share/man/man1/Epifany.1.gz
/usr/share/man/man1/ERPairFinder.1.gz
/usr/share/man/man1/ExecutePipeline.1.gz
/usr/share/man/man1/ExternalCalibration.1.gz
/usr/share/man/man1/FalseDiscoveryRate.1.gz
/usr/share/man/man1/FeatureFinderCentroided.1.gz
/usr/share/man/man1/FeatureFinderIdentification.1.gz
/usr/share/man/man1/FeatureFinderIsotopeWavelet.1.gz
/usr/share/man/man1/FeatureFinderMetabo.1.gz
/usr/share/man/man1/FeatureFinderMetaboIdent.1.gz
/usr/share/man/man1/FeatureFinderMRM.1.gz
/usr/share/man/man1/FeatureFinderMultiplex.1.gz
/usr/share/man/man1/FeatureFinderSuperHirn.1.gz
/usr/share/man/man1/FeatureLinkerLabeled.1.gz
/usr/share/man/man1/FeatureLinkerUnlabeled.1.gz
/usr/share/man/man1/FeatureLinkerUnlabeledKD.1.gz
/usr/share/man/man1/FeatureLinkerUnlabeledQT.1.gz
/usr/share/man/man1/FFEval.1.gz
/usr/share/man/man1/FidoAdapter.1.gz
/usr/share/man/man1/FileConverter.1.gz
/usr/share/man/man1/FileFilter.1.gz
/usr/share/man/man1/FileInfo.1.gz
/usr/share/man/man1/FileMerger.1.gz
/usr/share/man/man1/FuzzyDiff.1.gz
/usr/share/man/man1/GenericWrapper.1.gz
/usr/share/man/man1/GNPSExport.1.gz
/usr/share/man/man1/HighResPrecursorMassCorrector.1.gz
/usr/share/man/man1/IDConflictResolver.1.gz
/usr/share/man/man1/IDDecoyProbability.1.gz
/usr/share/man/man1/IDExtractor.1.gz
/usr/share/man/man1/IDFileConverter.1.gz
/usr/share/man/man1/IDFilter.1.gz
/usr/share/man/man1/IDMapper.1.gz
/usr/share/man/man1/IDMassAccuracy.1.gz
/usr/share/man/man1/IDMerger.1.gz
/usr/share/man/man1/IDPosteriorErrorProbability.1.gz
/usr/share/man/man1/IDRipper.1.gz
/usr/share/man/man1/IDRTCalibration.1.gz
/usr/share/man/man1/IDScoreSwitcher.1.gz
/usr/share/man/man1/IDSplitter.1.gz
/usr/share/man/man1/ImageCreator.1.gz
/usr/share/man/man1/InclusionExclusionListCreator.1.gz

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Використати цей пакет

OpenFactory може завантажити цю операційну систему у віртуальній машині браузера або почати збірку образу з рідною назвою пакета з цього запису.

Спробувати Debian 13 (Trixie) у браузері Зібрати образ, що містить topp

Версії, набори та репозиторії

Кожен рядок: метадані індексу пакетів для однієї версії, архітектури, набору й репозиторію. Назви, URL і розміри зі джерела; посилання є змінним місцем отримання, не перерозповсюдженням OpenFactory.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
2.6.0+cleaned1-4+b5	trixie / main	amd64	Debian 13 · main · amd64	3.1 MiB	17 MiB	pool/main/o/openms/topp_2.6.0+cleaned1-4+b5_amd64.deb
2.6.0+cleaned1-4+b5	trixie / main	arm64	Debian 13 · main · arm64	2.7 MiB	20 MiB	pool/main/o/openms/topp_2.6.0+cleaned1-4+b5_arm64.deb

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Контрольні суми й дати спостереження

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

2.6.0+cleaned1-4+b5 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: f07e611f349dd82c955874b82336769c629e2424d60cf8129d8fd6975351a9a1

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' 'f07e611f349dd82c955874b82336769c629e2424d60cf8129d8fd6975351a9a1' 'topp_2.6.0+cleaned1-4+b5_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

2.6.0+cleaned1-4+b5 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 2b742622d1cde40f85a1fc1d662d111ae5a20326f1b8bb45df0994d0296fb02a

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '2b742622d1cde40f85a1fc1d662d111ae5a20326f1b8bb45df0994d0296fb02a' 'topp_2.6.0+cleaned1-4+b5_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Повнота запису каталогу

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Джерела та походження

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 13 (Trixie) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Result: match verified
Debian 13 (Trixie) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Result: match verified