Debian 13 (Trixie) native package

r-bioc-alabaster.base

Save Bioconductor Objects To File

Packages / Debian 13 (Trixie) / gnu-r / r-bioc-alabaster.base

Package: r-bioc-alabaster.base (1.6.1+ds-2)

Maintainers:

Debian R Packages Maintainers

External Resources:

Homepage: [bioconductor.org]

Save Bioconductor Objects To File

Other Packages Related to r-bioc-alabaster.base:

dep: r-api-4.0
Package not available
dep: r-api-bioc-3.20
Package not available
dep: [r-bioc-alabaster.schemas]
Schemas for the Alabaster Framework
dep: [r-bioc-s4vectors]
BioConductor S4 implementation of vectors and lists
dep: [r-bioc-rhdf5] (>= 2.47.6)
BioConductor HDF5 interface to R
dep: [r-cran-jsonlite]
Robust, High Performance JSON Parser and Generator for R
dep: [r-cran-rcpp]
GNU R package for Seamless R and C++ Integration
dep: [r-bioc-rhdf5lib]
GNU R hdf5 library
dep: [libc6] (>= 2.32)
GNU C Library: Shared libraries
dep: [libgcc-s1] (>= 3.0)
GCC support library
dep: [libhdf5-310] (>= 1.14.3)
HDF5 C runtime files - serial version
dep: [libhdf5-cpp-310] (>= 1.14.3)
HDF5 - C++ runtime files - serial version
dep: [libstdc++6] (>= 14)
GNU Standard C++ Library v3
dep: [zlib1g] (>= 1:1.1.4)
compression library - runtime

sug: [r-bioc-biocstyle]
standard styles for vignettes and other Bioconductor documents
sug: [r-cran-rmarkdown]
convert R markdown documents into a variety of formats
sug: [r-cran-knitr]
GNU R package for dynamic report generation using Literate Programming
sug: [r-cran-testthat]
GNU R testsuite
sug: [r-cran-digest]
GNU R package for 'hash digest' of R data structures
sug: [r-cran-matrix]
GNU R package of classes for dense and sparse matrices
sug: [r-bioc-alabaster.matrix]
Load and Save matrices, arrays, and similar objects from files

Download r-bioc-alabaster.base

Architecture	Package Size	Installed Size	Files
amd64	728 KiB	2.3 MiB	[list of files]
arm64	682 KiB	2.3 MiB	[list of files]

Package file paths (172)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/lib/R/site-library/alabaster.base/DESCRIPTION
/usr/lib/R/site-library/alabaster.base/doc/index.html
/usr/lib/R/site-library/alabaster.base/doc/userguide.R
/usr/lib/R/site-library/alabaster.base/doc/userguide.Rmd
/usr/lib/R/site-library/alabaster.base/help/alabaster.base.rdb
/usr/lib/R/site-library/alabaster.base/help/alabaster.base.rdx
/usr/lib/R/site-library/alabaster.base/help/aliases.rds
/usr/lib/R/site-library/alabaster.base/help/AnIndex
/usr/lib/R/site-library/alabaster.base/help/paths.rds
/usr/lib/R/site-library/alabaster.base/html/00Index.html
/usr/lib/R/site-library/alabaster.base/html/R.css
/usr/lib/R/site-library/alabaster.base/include/byteme/byteme.hpp
/usr/lib/R/site-library/alabaster.base/include/byteme/ChunkedBufferReader.hpp
/usr/lib/R/site-library/alabaster.base/include/byteme/GzipFileReader.hpp
/usr/lib/R/site-library/alabaster.base/include/byteme/GzipFileWriter.hpp
/usr/lib/R/site-library/alabaster.base/include/byteme/IstreamReader.hpp
/usr/lib/R/site-library/alabaster.base/include/byteme/magic_numbers.hpp
/usr/lib/R/site-library/alabaster.base/include/byteme/OstreamWriter.hpp
/usr/lib/R/site-library/alabaster.base/include/byteme/PerByte.hpp
/usr/lib/R/site-library/alabaster.base/include/byteme/RawBufferReader.hpp
/usr/lib/R/site-library/alabaster.base/include/byteme/RawBufferWriter.hpp
/usr/lib/R/site-library/alabaster.base/include/byteme/RawFileReader.hpp
/usr/lib/R/site-library/alabaster.base/include/byteme/RawFileWriter.hpp
/usr/lib/R/site-library/alabaster.base/include/byteme/Reader.hpp
/usr/lib/R/site-library/alabaster.base/include/byteme/SelfClosingFILE.hpp
/usr/lib/R/site-library/alabaster.base/include/byteme/SelfClosingGzFile.hpp
/usr/lib/R/site-library/alabaster.base/include/byteme/SomeBufferReader.hpp
/usr/lib/R/site-library/alabaster.base/include/byteme/SomeFileReader.hpp
/usr/lib/R/site-library/alabaster.base/include/byteme/temp_file_path.hpp
/usr/lib/R/site-library/alabaster.base/include/byteme/Writer.hpp
/usr/lib/R/site-library/alabaster.base/include/byteme/ZlibBufferReader.hpp
/usr/lib/R/site-library/alabaster.base/include/byteme/ZlibBufferWriter.hpp
/usr/lib/R/site-library/alabaster.base/include/chihaya/binary_arithmetic.hpp
/usr/lib/R/site-library/alabaster.base/include/chihaya/binary_comparison.hpp
/usr/lib/R/site-library/alabaster.base/include/chihaya/binary_logic.hpp
/usr/lib/R/site-library/alabaster.base/include/chihaya/chihaya.hpp
/usr/lib/R/site-library/alabaster.base/include/chihaya/combine.hpp
/usr/lib/R/site-library/alabaster.base/include/chihaya/constant_array.hpp
/usr/lib/R/site-library/alabaster.base/include/chihaya/custom_array.hpp
/usr/lib/R/site-library/alabaster.base/include/chihaya/dense_array.hpp
/usr/lib/R/site-library/alabaster.base/include/chihaya/dimnames.hpp
/usr/lib/R/site-library/alabaster.base/include/chihaya/external_hdf5.hpp
/usr/lib/R/site-library/alabaster.base/include/chihaya/matrix_product.hpp
/usr/lib/R/site-library/alabaster.base/include/chihaya/minimal_array.hpp
/usr/lib/R/site-library/alabaster.base/include/chihaya/sparse_matrix.hpp
/usr/lib/R/site-library/alabaster.base/include/chihaya/subset_assignment.hpp
/usr/lib/R/site-library/alabaster.base/include/chihaya/subset.hpp
/usr/lib/R/site-library/alabaster.base/include/chihaya/transpose.hpp
/usr/lib/R/site-library/alabaster.base/include/chihaya/unary_arithmetic.hpp
/usr/lib/R/site-library/alabaster.base/include/chihaya/unary_comparison.hpp
/usr/lib/R/site-library/alabaster.base/include/chihaya/unary_logic.hpp
/usr/lib/R/site-library/alabaster.base/include/chihaya/unary_math.hpp
/usr/lib/R/site-library/alabaster.base/include/chihaya/unary_special_check.hpp
/usr/lib/R/site-library/alabaster.base/include/chihaya/utils_arithmetic.hpp
/usr/lib/R/site-library/alabaster.base/include/chihaya/utils_comparison.hpp
/usr/lib/R/site-library/alabaster.base/include/chihaya/utils_dimnames.hpp
/usr/lib/R/site-library/alabaster.base/include/chihaya/utils_list.hpp
/usr/lib/R/site-library/alabaster.base/include/chihaya/utils_logic.hpp
/usr/lib/R/site-library/alabaster.base/include/chihaya/utils_misc.hpp
/usr/lib/R/site-library/alabaster.base/include/chihaya/utils_public.hpp
/usr/lib/R/site-library/alabaster.base/include/chihaya/utils_subset.hpp
/usr/lib/R/site-library/alabaster.base/include/chihaya/utils_type.hpp
/usr/lib/R/site-library/alabaster.base/include/chihaya/utils_unary.hpp
/usr/lib/R/site-library/alabaster.base/include/chihaya/validate.hpp
/usr/lib/R/site-library/alabaster.base/include/comservatory/comservatory.hpp
/usr/lib/R/site-library/alabaster.base/include/comservatory/convert.hpp
/usr/lib/R/site-library/alabaster.base/include/comservatory/Creator.hpp
/usr/lib/R/site-library/alabaster.base/include/comservatory/Field.hpp
/usr/lib/R/site-library/alabaster.base/include/comservatory/Parser.hpp
/usr/lib/R/site-library/alabaster.base/include/comservatory/read.hpp
/usr/lib/R/site-library/alabaster.base/include/comservatory/Type.hpp
/usr/lib/R/site-library/alabaster.base/include/fetch.sh
/usr/lib/R/site-library/alabaster.base/include/millijson/millijson.hpp
/usr/lib/R/site-library/alabaster.base/include/ritsuko/choose_missing_placeholder.hpp
/usr/lib/R/site-library/alabaster.base/include/ritsuko/find_extremes.hpp
/usr/lib/R/site-library/alabaster.base/include/ritsuko/hdf5/as_numeric_datatype.hpp
/usr/lib/R/site-library/alabaster.base/include/ritsuko/hdf5/exceeds_limit.hpp
/usr/lib/R/site-library/alabaster.base/include/ritsuko/hdf5/get_1d_length.hpp
/usr/lib/R/site-library/alabaster.base/include/ritsuko/hdf5/get_dimensions.hpp
/usr/lib/R/site-library/alabaster.base/include/ritsuko/hdf5/get_name.hpp
/usr/lib/R/site-library/alabaster.base/include/ritsuko/hdf5/hdf5.hpp
/usr/lib/R/site-library/alabaster.base/include/ritsuko/hdf5/is_utf8_string.hpp
/usr/lib/R/site-library/alabaster.base/include/ritsuko/hdf5/IterateNdDataset.hpp
/usr/lib/R/site-library/alabaster.base/include/ritsuko/hdf5/load_attribute.hpp
/usr/lib/R/site-library/alabaster.base/include/ritsuko/hdf5/load_dataset.hpp
/usr/lib/R/site-library/alabaster.base/include/ritsuko/hdf5/miscellaneous.hpp
/usr/lib/R/site-library/alabaster.base/include/ritsuko/hdf5/missing_placeholder.hpp
/usr/lib/R/site-library/alabaster.base/include/ritsuko/hdf5/open.hpp
/usr/lib/R/site-library/alabaster.base/include/ritsuko/hdf5/pick_1d_block_size.hpp
/usr/lib/R/site-library/alabaster.base/include/ritsuko/hdf5/pick_nd_block_dimensions.hpp
/usr/lib/R/site-library/alabaster.base/include/ritsuko/hdf5/Stream1dNumericDataset.hpp
/usr/lib/R/site-library/alabaster.base/include/ritsuko/hdf5/Stream1dStringDataset.hpp
/usr/lib/R/site-library/alabaster.base/include/ritsuko/hdf5/_strings.hpp
/usr/lib/R/site-library/alabaster.base/include/ritsuko/hdf5/validate_string.hpp
/usr/lib/R/site-library/alabaster.base/include/ritsuko/is_date_time.hpp
/usr/lib/R/site-library/alabaster.base/include/ritsuko/parse_version_string.hpp
/usr/lib/R/site-library/alabaster.base/include/ritsuko/ritsuko.hpp
/usr/lib/R/site-library/alabaster.base/include/ritsuko/r_missing_value.hpp
/usr/lib/R/site-library/alabaster.base/include/takane/atomic_vector.hpp
/usr/lib/R/site-library/alabaster.base/include/takane/atomic_vector_list.hpp
/usr/lib/R/site-library/alabaster.base/include/takane/bam_file.hpp
/usr/lib/R/site-library/alabaster.base/include/takane/bcf_file.hpp
/usr/lib/R/site-library/alabaster.base/include/takane/bed_file.hpp
/usr/lib/R/site-library/alabaster.base/include/takane/bigbed_file.hpp
/usr/lib/R/site-library/alabaster.base/include/takane/bigwig_file.hpp
/usr/lib/R/site-library/alabaster.base/include/takane/bumpy_atomic_array.hpp
/usr/lib/R/site-library/alabaster.base/include/takane/bumpy_data_frame_array.hpp
/usr/lib/R/site-library/alabaster.base/include/takane/compressed_sparse_matrix.hpp
/usr/lib/R/site-library/alabaster.base/include/takane/csv_data_frame.hpp
/usr/lib/R/site-library/alabaster.base/include/takane/data_frame_factor.hpp
/usr/lib/R/site-library/alabaster.base/include/takane/data_frame.hpp
/usr/lib/R/site-library/alabaster.base/include/takane/data_frame_list.hpp
/usr/lib/R/site-library/alabaster.base/include/takane/delayed_array.hpp
/usr/lib/R/site-library/alabaster.base/include/takane/dense_array.hpp
/usr/lib/R/site-library/alabaster.base/include/takane/_derived_from.hpp
/usr/lib/R/site-library/alabaster.base/include/takane/_dimensions.hpp
/usr/lib/R/site-library/alabaster.base/include/takane/fasta_file.hpp
/usr/lib/R/site-library/alabaster.base/include/takane/fastq_file.hpp
/usr/lib/R/site-library/alabaster.base/include/takane/genomic_ranges.hpp
/usr/lib/R/site-library/alabaster.base/include/takane/genomic_ranges_list.hpp
/usr/lib/R/site-library/alabaster.base/include/takane/gff_file.hpp
/usr/lib/R/site-library/alabaster.base/include/takane/gmt_file.hpp
/usr/lib/R/site-library/alabaster.base/include/takane/_height.hpp
/usr/lib/R/site-library/alabaster.base/include/takane/multi_sample_dataset.hpp
/usr/lib/R/site-library/alabaster.base/include/takane/ranged_summarized_experiment.hpp
/usr/lib/R/site-library/alabaster.base/include/takane/rds_file.hpp
/usr/lib/R/site-library/alabaster.base/include/takane/_satisfies_interface.hpp
/usr/lib/R/site-library/alabaster.base/include/takane/sequence_information.hpp
/usr/lib/R/site-library/alabaster.base/include/takane/sequence_string_set.hpp
/usr/lib/R/site-library/alabaster.base/include/takane/simple_list.hpp
/usr/lib/R/site-library/alabaster.base/include/takane/single_cell_experiment.hpp
/usr/lib/R/site-library/alabaster.base/include/takane/spatial_experiment.hpp
/usr/lib/R/site-library/alabaster.base/include/takane/string_factor.hpp
/usr/lib/R/site-library/alabaster.base/include/takane/summarized_experiment.hpp
/usr/lib/R/site-library/alabaster.base/include/takane/takane.hpp
/usr/lib/R/site-library/alabaster.base/include/takane/utils_array.hpp
/usr/lib/R/site-library/alabaster.base/include/takane/utils_bumpy_array.hpp
/usr/lib/R/site-library/alabaster.base/include/takane/utils_compressed_list.hpp
/usr/lib/R/site-library/alabaster.base/include/takane/utils_csv.hpp
/usr/lib/R/site-library/alabaster.base/include/takane/utils_factor.hpp
/usr/lib/R/site-library/alabaster.base/include/takane/utils_files.hpp
/usr/lib/R/site-library/alabaster.base/include/takane/utils_json.hpp
/usr/lib/R/site-library/alabaster.base/include/takane/utils_other.hpp
/usr/lib/R/site-library/alabaster.base/include/takane/utils_public.hpp
/usr/lib/R/site-library/alabaster.base/include/takane/utils_string.hpp
/usr/lib/R/site-library/alabaster.base/include/takane/utils_summarized_experiment.hpp
/usr/lib/R/site-library/alabaster.base/include/takane/_validate.hpp
/usr/lib/R/site-library/alabaster.base/include/takane/vcf_experiment.hpp
/usr/lib/R/site-library/alabaster.base/include/uzuki2/Dummy.hpp
/usr/lib/R/site-library/alabaster.base/include/uzuki2/ExternalTracker.hpp
/usr/lib/R/site-library/alabaster.base/include/uzuki2/interfaces.hpp
/usr/lib/R/site-library/alabaster.base/include/uzuki2/ParsedList.hpp
/usr/lib/R/site-library/alabaster.base/include/uzuki2/parse_hdf5.hpp
/usr/lib/R/site-library/alabaster.base/include/uzuki2/parse_json.hpp
/usr/lib/R/site-library/alabaster.base/include/uzuki2/uzuki2.hpp
/usr/lib/R/site-library/alabaster.base/include/uzuki2/Version.hpp
/usr/lib/R/site-library/alabaster.base/INDEX
/usr/lib/R/site-library/alabaster.base/libs/alabaster.base.so
/usr/lib/R/site-library/alabaster.base/Meta/features.rds
/usr/lib/R/site-library/alabaster.base/Meta/hsearch.rds
/usr/lib/R/site-library/alabaster.base/Meta/links.rds
/usr/lib/R/site-library/alabaster.base/Meta/nsInfo.rds
/usr/lib/R/site-library/alabaster.base/Meta/package.rds
/usr/lib/R/site-library/alabaster.base/Meta/Rd.rds
/usr/lib/R/site-library/alabaster.base/Meta/vignette.rds
/usr/lib/R/site-library/alabaster.base/NAMESPACE
/usr/lib/R/site-library/alabaster.base/NEWS.Rd
/usr/lib/R/site-library/alabaster.base/R/alabaster.base
/usr/lib/R/site-library/alabaster.base/R/alabaster.base.rdb
/usr/lib/R/site-library/alabaster.base/R/alabaster.base.rdx
/usr/share/doc/r-bioc-alabaster.base/changelog.Debian.gz
/usr/share/doc/r-bioc-alabaster.base/copyright

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Use this package

OpenFactory can boot this operating system in a browser VM, or start a build that includes the native package name from this record.

Try Debian 13 (Trixie) in the browser Build an image that includes r-bioc-alabaster.base

Versions, suites, and repositories

Each row is recorded package-index metadata for one version, architecture, suite, and repository. Names, URLs, and sizes are source-reported; a link is a potentially mutable retrieval location, not an OpenFactory redistribution claim or proof that OpenFactory retained the artifact bytes.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
1.6.1+ds-2	trixie / main	amd64	Debian 13 · main · amd64	728 KiB	2.3 MiB	pool/main/r/r-bioc-alabaster.base/r-bioc-alabaster.base_1.6.1+ds-2_amd64.deb
1.6.1+ds-2	trixie / main	arm64	Debian 13 · main · arm64	682 KiB	2.3 MiB	pool/main/r/r-bioc-alabaster.base/r-bioc-alabaster.base_1.6.1+ds-2_arm64.deb

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Checksums and observation dates

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

1.6.1+ds-2 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 6347805f3b875a4f4b157d05436c318dfdb14da90df734dfe4fe654b6e8b807d

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '6347805f3b875a4f4b157d05436c318dfdb14da90df734dfe4fe654b6e8b807d' 'r-bioc-alabaster.base_1.6.1+ds-2_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

1.6.1+ds-2 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: f073e81cfa91464c9dd0e36e89d3ceeeeebfd3fd34ec270498533b6d3c2888c4

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' 'f073e81cfa91464c9dd0e36e89d3ceeeeebfd3fd34ec270498533b6d3c2888c4' 'r-bioc-alabaster.base_1.6.1+ds-2_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Catalog record completeness

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Sources and provenance

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 13 (Trixie) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Result: match verified
Debian 13 (Trixie) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Result: match verified