Debian 13 (Trixie) native package

libbio-samtools-perl

Perl interface to SamTools library for DNA sequencing

Packages / Debian 13 (Trixie) / perl / libbio-samtools-perl

[Source: libbio-samtools-perl]

Package: libbio-samtools-perl (1.43-5+b1)

Maintainers:

Debian Perl Group

External Resources:

Homepage: [metacpan.org]

Perl interface to SamTools library for DNA sequencing

Other Packages Related to libbio-samtools-perl:

dep: [perl] (>= 5.40.0-6)
Larry Wall's Practical Extraction and Report Language
dep: perlapi-5.40.0
Package not available
dep: [libc6] (>= 2.34)
GNU C Library: Shared libraries
dep: [zlib1g] (>= 1:1.2.3.3)
compression library - runtime
dep: [libbio-perl-perl]
BioPerl core perl modules

enh: [gbrowse]
GMOD Generic Genome Browser
enh: [samtools]
processing sequence alignments in SAM, BAM and CRAM formats

Download libbio-samtools-perl

Architecture	Package Size	Installed Size	Files
amd64	177 KiB	587 KiB	[list of files]
arm64	166 KiB	615 KiB	[list of files]

Paketdateipfade (46)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/bam2bedgraph
/usr/bin/bamToGBrowse.pl
/usr/bin/chrom_sizes.pl
/usr/bin/genomeCoverageBed.pl
/usr/lib/aarch64-linux-gnu/perl5/5.40/auto/Bio/DB/Sam/Sam.bs
/usr/lib/aarch64-linux-gnu/perl5/5.40/auto/Bio/DB/Sam/Sam.so
/usr/lib/aarch64-linux-gnu/perl5/5.40/Bio/DB/Bam/Alignment.pm
/usr/lib/aarch64-linux-gnu/perl5/5.40/Bio/DB/Bam/AlignWrapper.pm
/usr/lib/aarch64-linux-gnu/perl5/5.40/Bio/DB/Bam/FetchIterator.pm
/usr/lib/aarch64-linux-gnu/perl5/5.40/Bio/DB/Bam/Pileup.pm
/usr/lib/aarch64-linux-gnu/perl5/5.40/Bio/DB/Bam/PileupWrapper.pm
/usr/lib/aarch64-linux-gnu/perl5/5.40/Bio/DB/Bam/Query.pm
/usr/lib/aarch64-linux-gnu/perl5/5.40/Bio/DB/Bam/ReadIterator.pm
/usr/lib/aarch64-linux-gnu/perl5/5.40/Bio/DB/Bam/Target.pm
/usr/lib/aarch64-linux-gnu/perl5/5.40/Bio/DB/Sam/Constants.pm
/usr/lib/aarch64-linux-gnu/perl5/5.40/Bio/DB/Sam.pm
/usr/lib/aarch64-linux-gnu/perl5/5.40/Bio/DB/Sam/SamToGBrowse.pm
/usr/lib/aarch64-linux-gnu/perl5/5.40/Bio/DB/Sam/Segment.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/auto/Bio/DB/Sam/Sam.bs
/usr/lib/x86_64-linux-gnu/perl5/5.40/auto/Bio/DB/Sam/Sam.so
/usr/lib/x86_64-linux-gnu/perl5/5.40/Bio/DB/Bam/Alignment.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/Bio/DB/Bam/AlignWrapper.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/Bio/DB/Bam/FetchIterator.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/Bio/DB/Bam/Pileup.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/Bio/DB/Bam/PileupWrapper.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/Bio/DB/Bam/Query.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/Bio/DB/Bam/ReadIterator.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/Bio/DB/Bam/Target.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/Bio/DB/Sam/Constants.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/Bio/DB/Sam.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/Bio/DB/Sam/SamToGBrowse.pm
/usr/lib/x86_64-linux-gnu/perl5/5.40/Bio/DB/Sam/Segment.pm
/usr/share/doc/libbio-samtools-perl/changelog.Debian.amd64.gz
/usr/share/doc/libbio-samtools-perl/changelog.Debian.arm64.gz
/usr/share/doc/libbio-samtools-perl/changelog.Debian.gz
/usr/share/doc/libbio-samtools-perl/changelog.gz
/usr/share/doc/libbio-samtools-perl/copyright
/usr/share/lintian/overrides/libbio-samtools-perl
/usr/share/man/man3/Bio::DB::Bam::Alignment.3pm.gz
/usr/share/man/man3/Bio::DB::Bam::AlignWrapper.3pm.gz
/usr/share/man/man3/Bio::DB::Bam::Pileup.3pm.gz
/usr/share/man/man3/Bio::DB::Bam::PileupWrapper.3pm.gz
/usr/share/man/man3/Bio::DB::Bam::Query.3pm.gz
/usr/share/man/man3/Bio::DB::Bam::Target.3pm.gz
/usr/share/man/man3/Bio::DB::Sam.3pm.gz
/usr/share/man/man3/Bio::DB::Sam::Constants.3pm.gz

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Dieses Paket verwenden

OpenFactory kann dieses Betriebssystem in einer Browser-VM starten oder einen Image-Build mit dem nativen Paketnamen aus diesem Datensatz beginnen.

Debian 13 (Trixie) im Browser testen Image mit libbio-samtools-perl bauen

Versionen, Suiten und Repositories

Jede Zeile ist Paketindex-Metadaten für eine Version, Architektur, Suite und ein Repository. Namen, URLs und Größen stammen aus der Quelle; ein Link ist ein veränderbarer Abrufort, kein Weitergabanspruch von OpenFactory.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
1.43-5+b1	trixie / main	amd64	Debian 13 · main · amd64	177 KiB	587 KiB	pool/main/libb/libbio-samtools-perl/libbio-samtools-perl_1.43-5+b1_amd64.deb
1.43-5+b1	trixie / main	arm64	Debian 13 · main · arm64	166 KiB	615 KiB	pool/main/libb/libbio-samtools-perl/libbio-samtools-perl_1.43-5+b1_arm64.deb

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Prüfsummen und Beobachtungsdaten

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

1.43-5+b1 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 00f60d697d2a0ddfbffdb07388f3bfaf0e6cbe881258ee97681516ef04fb2a38

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '00f60d697d2a0ddfbffdb07388f3bfaf0e6cbe881258ee97681516ef04fb2a38' 'libbio-samtools-perl_1.43-5+b1_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

1.43-5+b1 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 8185f89994b31aded9d788913e09a66d0a1461df5e8932060209d3fd2a89cd02

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '8185f89994b31aded9d788913e09a66d0a1461df5e8932060209d3fd2a89cd02' 'libbio-samtools-perl_1.43-5+b1_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Vollständigkeit des Katalogsatzes

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Quellen und Herkunft

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 13 (Trixie) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Result: match verified
Debian 13 (Trixie) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Result: match verified