r-bioc-isoformswitchanalyzer

dep: r-api-4.0

Package not available

dep: r-api-bioc-3.20

Package not available

dep: [r-bioc-limma]

linear models for microarray data

dep: [r-bioc-dexseq]

GNU R inference of differential exon usage in RNA-Seq

dep: [r-bioc-saturn] (>= 1.7.0)

scalable analysis of differential transcript usage for RNA-sequencing

dep: [r-bioc-sva]

GNU R Surrogate Variable Analysis

dep: [r-cran-ggplot2] (>= 3.3.5)

implementation of the Grammar of Graphics

dep: [r-bioc-pfamanalyzer]

GNU R identification of domain isotypes in pfam data

dep: [r-bioc-bsgenome]

BioConductor infrastructure for Biostrings-based genome data packages

dep: [r-cran-plyr]

tools for splitting, applying and combining data

dep: [r-cran-reshape2]

Flexibly reshape data: a reboot of the reshape package

dep: [r-cran-gridextra]

GNU R package with extensions for the grid package

dep: [r-bioc-biostrings] (>= 2.50.0)

GNU R string objects representing biological sequences

dep: [r-bioc-iranges]

GNU R low-level containers for storing sets of integer ranges

dep: [r-bioc-genomicranges]

BioConductor representation and manipulation of genomic intervals

dep: [r-cran-rcolorbrewer]

GNU R package providing suitable color palettes

dep: [r-bioc-rtracklayer]

GNU R interface to genome browsers and their annotation tracks

dep: [r-cran-venndiagram]

Generate High-Resolution Venn and Euler Plots

dep: [r-cran-dbi]

GNU R package providing a generic database interface

dep: [r-bioc-genomeinfodb]

BioConductor utilities for manipulating chromosome identifiers

dep: [r-bioc-tximport] (>= 1.7.1)

transcript-level estimates for biological sequencing

dep: [r-bioc-tximeta] (>= 1.7.12)

Transcript Quantification Import with Automatic Metadata

dep: [r-bioc-edger]

Empirical analysis of digital gene expression data in R

dep: [r-cran-futile.logger]

logging utility for GNU R

dep: [r-cran-stringr]

Make it easier to work with strings

dep: [r-cran-dplyr]

GNU R grammar of data manipulation

dep: [r-cran-magrittr]

GNU R forward-pipe operator

dep: [r-cran-readr]

GNU R package to read rectangular text data

dep: [r-cran-tibble]

GNU R Simple Data Frames

dep: [r-bioc-xvector]

BioConductor representation and manpulation of external sequences

dep: [r-bioc-biocgenerics]

generic functions for Bioconductor

dep: [r-cran-rcurl]

GNU R General network (HTTP/FTP/...) client interface

dep: [r-bioc-biobase]

base functions for Bioconductor

dep: [r-bioc-summarizedexperiment]

BioConductor assay container

dep: [r-cran-tidyr]

GNU R package to easily tidy data

dep: [r-bioc-s4vectors]

BioConductor S4 implementation of vectors and lists

dep: [r-bioc-biocparallel]

BioConductor facilities for parallel evaluation

dep: [r-bioc-pwalign]

Perform pairwise sequence alignments

sug: [r-cran-knitr]

GNU R package for dynamic report generation using Literate Programming

sug: [r-cran-rmarkdown]

convert R markdown documents into a variety of formats