Packages / Debian 13 (Trixie) / science / snippy
Package: snippy (4.6.0+dfsg-5)
Maintainers:
External Resources:
Homepage: [github.com]
rapid haploid variant calling and core genome alignment
Other Packages Related to snippy:
dep: [perl] [any]
Larry Wall's Practical Extraction and Report Language
dep: [any2fasta]
convert various sequence formats to FASTA
dep: [bcftools]
genomic variant calling and manipulation of VCF/BCF files
dep: [bedtools]
suite of utilities for comparing genomic features
dep: [bwa]
Burrows-Wheeler Aligner
dep: [freebayes] (>= 1.3.6-2)
Bayesian haplotype-based polymorphism discovery and genotyping
dep: [libbio-perl-perl]
BioPerl core perl modules
dep: [libvcflib-tools]
C++ library for parsing and manipulating VCF files (tools)
dep: [minimap2]
versatile pairwise aligner for genomic and spliced nucleotide sequences
dep: [parallel]
build and execute command lines from standard input in parallel
dep: [samclip]
filter SAM file for soft and hard clipped alignments
dep: [samtools]
processing sequence alignments in SAM, BAM and CRAM formats
dep: [seqtk]
Fast and lightweight tool for processing sequences in the FASTA or FASTQ format
dep: [snp-sites]
Binary code for the package snp-sites
dep: [snpeff]
genetic variant annotation and effect prediction toolbox - tool
dep: [vt]
toolset for short variant discovery in genetic sequence data
Download snippy
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| all | 26 KiB | 100 KiB | [list of files] |
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Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3