Linux workstation

Debian 13 (Trixie) native package

bedtools

suite of utilities for comparing genomic features

Packages / Debian 13 (Trixie) / science / bedtools

[Source: bedtools]

Package: bedtools (2.31.1+dfsg-2+b1)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [github.com]

Similar packages:

suite of utilities for comparing genomic features

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    GCC support library

  • dep: [liblzma5] (>= 5.1.1alpha+20120614)

    XZ-format compression library

  • dep: [libstdc++6] (>= 13.1)

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    compression library - runtime

Download bedtools

ArchitecturePackage SizeInstalled SizeFiles
amd64662 KiB2.1 MiB[list of files]
arm64587 KiB2.0 MiB[list of files]

Rutas de archivos del paquete (51)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

  • /usr/bin/annotateBed
  • /usr/bin/bamToBed
  • /usr/bin/bamToFastq
  • /usr/bin/bed12ToBed6
  • /usr/bin/bedpeToBam
  • /usr/bin/bedToBam
  • /usr/bin/bedToIgv
  • /usr/bin/bedtools
  • /usr/bin/closestBed
  • /usr/bin/clusterBed
  • /usr/bin/complementBed
  • /usr/bin/coverageBed
  • /usr/bin/expandCols
  • /usr/bin/fastaFromBed
  • /usr/bin/flankBed
  • /usr/bin/genomeCoverageBed
  • /usr/bin/getOverlap
  • /usr/bin/groupBy
  • /usr/bin/intersectBed
  • /usr/bin/linksBed
  • /usr/bin/mapBed
  • /usr/bin/maskFastaFromBed
  • /usr/bin/mergeBed
  • /usr/bin/multiBamCov
  • /usr/bin/multiIntersectBed
  • /usr/bin/nucBed
  • /usr/bin/pairToBed
  • /usr/bin/pairToPair
  • /usr/bin/randomBed
  • /usr/bin/shiftBed
  • /usr/bin/shuffleBed
  • /usr/bin/slopBed
  • /usr/bin/sortBed
  • /usr/bin/subtractBed
  • /usr/bin/tagBam
  • /usr/bin/unionBedGraphs
  • /usr/bin/windowBed
  • /usr/bin/windowMaker
  • /usr/share/bash-completion/completions/bedtools
  • /usr/share/bedtools/genomes/human.hg18.genome
  • /usr/share/bedtools/genomes/human.hg19.genome
  • /usr/share/bedtools/genomes/human.hg38.genome
  • /usr/share/bedtools/genomes/mouse.mm10.genome
  • /usr/share/bedtools/genomes/mouse.mm8.genome
  • /usr/share/bedtools/genomes/mouse.mm9.genome
  • /usr/share/doc/bedtools/changelog.Debian.arm64.gz
  • /usr/share/doc/bedtools/changelog.Debian.gz
  • /usr/share/doc/bedtools/copyright
  • /usr/share/doc/bedtools/README.md
  • /usr/share/doc/bedtools/README.test
  • /usr/share/doc/bedtools/run-unit-test

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Usar este paquete

OpenFactory puede arrancar este sistema operativo en una máquina virtual del navegador, o iniciar una construcción que incluye el nombre nativo del paquete de este registro.

Probar Debian 13 (Trixie) en el navegadorConstruir una imagen que incluye bedtools

Versiones, suites y repositorios

Cada fila es metadato del índice de paquetes para una versión, arquitectura, suite y repositorio. Nombres, URL y tamaños vienen de la fuente; un enlace es un punto de descarga que puede cambiar, no una redistribución de OpenFactory.

VersionReleaseArchitectureRepositoryPackage sizeInstalled sizePublisher repository artifact
2.31.1+dfsg-2+b1trixie / mainarm64Debian 13 · main · arm64587 KiB2.0 MiBpool/main/b/bedtools/bedtools_2.31.1+dfsg-2+b1_arm64.deb
2.31.1+dfsg-2trixie / mainamd64Debian 13 · main · amd64662 KiB2.1 MiBpool/main/b/bedtools/bedtools_2.31.1+dfsg-2_amd64.deb

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Sumas de comprobación y fechas de observación

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

2.31.1+dfsg-2+b1 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: ecb44e907ad87250432c46282b972950ccf8c76c0514ae6defa3a2fcb1faa546

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' 'ecb44e907ad87250432c46282b972950ccf8c76c0514ae6defa3a2fcb1faa546' 'bedtools_2.31.1+dfsg-2+b1_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

2.31.1+dfsg-2 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: d47c44e52eed5900a04f06966cf984bfd10b8330a0755ad82275f89e068425c4

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' 'd47c44e52eed5900a04f06966cf984bfd10b8330a0755ad82275f89e068425c4' 'bedtools_2.31.1+dfsg-2_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Completitud del registro

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description
25/25
Artifact path and source digest
25/25
Dependency metadata
15/15
Package-file index
15/15
Homepage
5/5
License text
0/5
Source package or maintainer
10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Fuentes y procedencia

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

  • Debian 13 (Trixie) main amd64Sep 1, 2026

    Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: main/binary-amd64/Packages.xz
    Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
    Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
    Result: match verified

  • Debian 13 (Trixie) main arm64Sep 1, 2026

    Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: main/binary-arm64/Packages.xz
    Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
    Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
    Result: match verified