Debian 13 (Trixie) native package

flye

de novo assembler for single molecule sequencing reads using repeat graphs

Packages / Debian 13 (Trixie) / science / flye

Package: flye (2.9.5+dfsg-1)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [github.com]

de novo assembler for single molecule sequencing reads using repeat graphs

Other Packages Related to flye:

dep: [libc6] (>= 2.38)
GNU C Library: Shared libraries
dep: [libgcc-s1] (>= 3.0)
GCC support library
dep: [libstdc++6] (>= 14)
GNU Standard C++ Library v3
dep: [zlib1g] (>= 1:1.1.4)
compression library - runtime
dep: [python3] [any]
interactive high-level object-oriented language (default python3 version)
dep: [python3-six]
Python 2 and 3 compatibility library
dep: [minimap2]
versatile pairwise aligner for genomic and spliced nucleotide sequences
dep: [samtools]
processing sequence alignments in SAM, BAM and CRAM formats

Download flye

Architecture	Package Size	Installed Size	Files
amd64	22 MiB	36 MiB	[list of files]
arm64	22 MiB	36 MiB	[list of files]

Rutas de archivos del paquete (68)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/flye
/usr/bin/flye-modules
/usr/lib/python3/dist-packages/flye-2.9.5.egg-info/dependency_links.txt
/usr/lib/python3/dist-packages/flye-2.9.5.egg-info/entry_points.txt
/usr/lib/python3/dist-packages/flye-2.9.5.egg-info/PKG-INFO
/usr/lib/python3/dist-packages/flye-2.9.5.egg-info/top_level.txt
/usr/lib/python3/dist-packages/flye/assembly/assemble.py
/usr/lib/python3/dist-packages/flye/assembly/__init__.py
/usr/lib/python3/dist-packages/flye/assembly/repeat_graph.py
/usr/lib/python3/dist-packages/flye/assembly/scaffolder.py
/usr/lib/python3/dist-packages/flye/__build__.py
/usr/lib/python3/dist-packages/flye/config/bin_cfg/asm_corrected_reads.cfg
/usr/lib/python3/dist-packages/flye/config/bin_cfg/asm_defaults.cfg
/usr/lib/python3/dist-packages/flye/config/bin_cfg/asm_hifi.cfg
/usr/lib/python3/dist-packages/flye/config/bin_cfg/asm_nano_hq.cfg
/usr/lib/python3/dist-packages/flye/config/bin_cfg/asm_raw_reads.cfg
/usr/lib/python3/dist-packages/flye/config/bin_cfg/asm_subasm.cfg
/usr/lib/python3/dist-packages/flye/config/bin_cfg/nano_r94_g36_homopolymers.mat
/usr/lib/python3/dist-packages/flye/config/bin_cfg/nano_r94_g36_substitutions.mat
/usr/lib/python3/dist-packages/flye/config/bin_cfg/nano_r94_homopolymers.mat
/usr/lib/python3/dist-packages/flye/config/bin_cfg/nano_r94_substitutions.mat
/usr/lib/python3/dist-packages/flye/config/bin_cfg/pacbio_chm13_homopolymers.mat
/usr/lib/python3/dist-packages/flye/config/bin_cfg/pacbio_chm13_substitutions.mat
/usr/lib/python3/dist-packages/flye/config/bin_cfg/pacbio_homopolymers.mat
/usr/lib/python3/dist-packages/flye/config/bin_cfg/pacbio_substitutions.mat
/usr/lib/python3/dist-packages/flye/config/configurator.py
/usr/lib/python3/dist-packages/flye/config/__init__.py
/usr/lib/python3/dist-packages/flye/config/py_cfg.py
/usr/lib/python3/dist-packages/flye/__init__.py
/usr/lib/python3/dist-packages/flye/main.py
/usr/lib/python3/dist-packages/flye/polishing/alignment.py
/usr/lib/python3/dist-packages/flye/polishing/bubbles.py
/usr/lib/python3/dist-packages/flye/polishing/consensus.py
/usr/lib/python3/dist-packages/flye/polishing/__init__.py
/usr/lib/python3/dist-packages/flye/polishing/polish.py
/usr/lib/python3/dist-packages/flye/repeat_graph/graph_alignment.py
/usr/lib/python3/dist-packages/flye/repeat_graph/__init__.py
/usr/lib/python3/dist-packages/flye/repeat_graph/repeat_graph.py
/usr/lib/python3/dist-packages/flye/short_plasmids/circular_sequences.py
/usr/lib/python3/dist-packages/flye/short_plasmids/__init__.py
/usr/lib/python3/dist-packages/flye/short_plasmids/plasmids.py
/usr/lib/python3/dist-packages/flye/short_plasmids/unmapped_reads.py
/usr/lib/python3/dist-packages/flye/short_plasmids/utils.py
/usr/lib/python3/dist-packages/flye/tests/data/ecoli_500kb.fasta
/usr/lib/python3/dist-packages/flye/tests/data/ecoli_500kb_reads.fastq.gz
/usr/lib/python3/dist-packages/flye/tests/data/ecoli_500kb_reads_hifi.fastq.gz
/usr/lib/python3/dist-packages/flye/tests/__init__.py
/usr/lib/python3/dist-packages/flye/tests/test_toy.py
/usr/lib/python3/dist-packages/flye/trestle/divergence.py
/usr/lib/python3/dist-packages/flye/trestle/graph_resolver.py
/usr/lib/python3/dist-packages/flye/trestle/__init__.py
/usr/lib/python3/dist-packages/flye/trestle/trestle_config.py
/usr/lib/python3/dist-packages/flye/trestle/trestle.py
/usr/lib/python3/dist-packages/flye/utils/bytes2human.py
/usr/lib/python3/dist-packages/flye/utils/fasta_parser.py
/usr/lib/python3/dist-packages/flye/utils/__init__.py
/usr/lib/python3/dist-packages/flye/utils/sam_parser.py
/usr/lib/python3/dist-packages/flye/utils/utils.py
/usr/lib/python3/dist-packages/flye/__version__.py
/usr/share/doc/flye/changelog.Debian.gz
/usr/share/doc/flye/changelog.gz
/usr/share/doc/flye/copyright
/usr/share/doc/flye/FAQ.md.gz
/usr/share/doc/flye/graph_example.png
/usr/share/doc/flye/README.md.gz
/usr/share/doc/flye/USAGE.md.gz
/usr/share/man/man1/flye.1.gz
/usr/share/man/man1/flye-modules.1.gz

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Usar este paquete

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Versiones, suites y repositorios

Cada fila es metadato del índice de paquetes para una versión, arquitectura, suite y repositorio. Nombres, URL y tamaños vienen de la fuente; un enlace es un punto de descarga que puede cambiar, no una redistribución de OpenFactory.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
2.9.5+dfsg-1	trixie / main	amd64	Debian 13 · main · amd64	22 MiB	36 MiB	pool/main/f/flye/flye_2.9.5+dfsg-1_amd64.deb
2.9.5+dfsg-1	trixie / main	arm64	Debian 13 · main · arm64	22 MiB	36 MiB	pool/main/f/flye/flye_2.9.5+dfsg-1_arm64.deb

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Sumas de comprobación y fechas de observación

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

2.9.5+dfsg-1 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 4dea545babb492c15c512ea09248ee18fd72b4d9fed87d759c4711db6ebe6dbe

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '4dea545babb492c15c512ea09248ee18fd72b4d9fed87d759c4711db6ebe6dbe' 'flye_2.9.5+dfsg-1_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

2.9.5+dfsg-1 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: b9472ca87bd2e5f2d2f24fe9017ab84a0eefcf96195d1ade5add43187ff54c7e

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' 'b9472ca87bd2e5f2d2f24fe9017ab84a0eefcf96195d1ade5add43187ff54c7e' 'flye_2.9.5+dfsg-1_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Completitud del registro

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Fuentes y procedencia

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 13 (Trixie) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Result: match verified
Debian 13 (Trixie) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Result: match verified