Debian 13 (Trixie) native package

gmap

spliced and SNP-tolerant alignment for mRNA and short reads

Packages / Debian 13 (Trixie) / science / gmap

Package: gmap (2024-11-20+ds-2)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [research-pub.gene.com]

spliced and SNP-tolerant alignment for mRNA and short reads

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dep: [libbz2-1.0]
high-quality block-sorting file compressor library - runtime
dep: [libc6] (>= 2.34)
GNU C Library: Shared libraries
dep: [zlib1g] (>= 1:1.2.6)
compression library - runtime

Download gmap

Architecture	Package Size	Installed Size	Files
amd64	33 MiB	263 MiB	[list of files]
arm64	6.7 MiB	60 MiB	[list of files]

Rutas de archivos del paquete (108)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/gmap
/usr/bin/gmap.avx2
/usr/bin/gmap.avx512
/usr/bin/gmap_build
/usr/bin/gmapl
/usr/bin/gmapl.avx2
/usr/bin/gmapl.avx512
/usr/bin/gmapl.nosimd
/usr/bin/gmapl.sse2
/usr/bin/gmapl.sse41
/usr/bin/gmapl.sse42
/usr/bin/gmapl.ssse3
/usr/bin/gmap.nosimd
/usr/bin/gmap.sse2
/usr/bin/gmap.sse41
/usr/bin/gmap.sse42
/usr/bin/gmap.ssse3
/usr/bin/gsnap
/usr/bin/gsnap.avx2
/usr/bin/gsnap.avx512
/usr/bin/gsnapl
/usr/bin/gsnapl.avx2
/usr/bin/gsnapl.avx512
/usr/bin/gsnapl.nosimd
/usr/bin/gsnapl.sse2
/usr/bin/gsnapl.sse41
/usr/bin/gsnapl.sse42
/usr/bin/gsnapl.ssse3
/usr/bin/gsnap.nosimd
/usr/bin/gsnap.sse2
/usr/bin/gsnap.sse41
/usr/bin/gsnap.sse42
/usr/bin/gsnap.ssse3
/usr/lib/gmap/atoiindex
/usr/lib/gmap/cmetindex
/usr/lib/gmap/cpuid
/usr/lib/gmap/dbsnp_iit
/usr/lib/gmap/ensembl_genes
/usr/lib/gmap/fa_coords
/usr/lib/gmap/get-genome
/usr/lib/gmap/gff3_genes
/usr/lib/gmap/gff3_introns
/usr/lib/gmap/gff3_splicesites
/usr/lib/gmap/gmap
/usr/lib/gmap/gmap.avx2
/usr/lib/gmap/gmap.avx512
/usr/lib/gmap/gmap_build
/usr/lib/gmap/gmap_cat
/usr/lib/gmap/gmapindex
/usr/lib/gmap/gmapl
/usr/lib/gmap/gmapl.avx2
/usr/lib/gmap/gmapl.avx512
/usr/lib/gmap/gmapl.nosimd
/usr/lib/gmap/gmapl.sse2
/usr/lib/gmap/gmapl.sse41
/usr/lib/gmap/gmapl.sse42
/usr/lib/gmap/gmapl.ssse3
/usr/lib/gmap/gmap.nosimd
/usr/lib/gmap/gmap_process
/usr/lib/gmap/gmap.sse2
/usr/lib/gmap/gmap.sse41
/usr/lib/gmap/gmap.sse42
/usr/lib/gmap/gmap.ssse3
/usr/lib/gmap/gsnap
/usr/lib/gmap/gsnap.avx2
/usr/lib/gmap/gsnap.avx512
/usr/lib/gmap/gsnapl
/usr/lib/gmap/gsnapl.avx2
/usr/lib/gmap/gsnapl.avx512
/usr/lib/gmap/gsnapl.nosimd
/usr/lib/gmap/gsnapl.sse2
/usr/lib/gmap/gsnapl.sse41
/usr/lib/gmap/gsnapl.sse42
/usr/lib/gmap/gsnapl.ssse3
/usr/lib/gmap/gsnap.nosimd
/usr/lib/gmap/gsnap.sse2
/usr/lib/gmap/gsnap.sse41
/usr/lib/gmap/gsnap.sse42
/usr/lib/gmap/gsnap.ssse3
/usr/lib/gmap/gtf_genes
/usr/lib/gmap/gtf_introns
/usr/lib/gmap/gtf_splicesites
/usr/lib/gmap/gtf_transcript_splicesites
/usr/lib/gmap/gvf_iit
/usr/lib/gmap/iit_dump
/usr/lib/gmap/iit_get
/usr/lib/gmap/iit_store
/usr/lib/gmap/indexdb_cat
/usr/lib/gmap/md_coords
/usr/lib/gmap/psl_genes
/usr/lib/gmap/psl_introns
/usr/lib/gmap/psl_splicesites
/usr/lib/gmap/snpindex
/usr/lib/gmap/trindex
/usr/lib/gmap/vcf_iit
/usr/share/doc/gmap/changelog.Debian.gz
/usr/share/doc/gmap/changelog.gz
/usr/share/doc/gmap/copyright
/usr/share/doc/gmap/examples/tests.tar.xz
/usr/share/doc/gmap/NOTICE
/usr/share/doc/gmap/README.Debian
/usr/share/doc/gmap/README.gz
/usr/share/lintian/overrides/gmap
/usr/share/man/man1/gmap.1.gz
/usr/share/man/man1/gmap_build.1.gz
/usr/share/man/man1/gmapl.1.gz
/usr/share/man/man1/gsnap.1.gz
/usr/share/man/man1/gsnapl.1.gz

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Usar este paquete

OpenFactory puede arrancar este sistema operativo en una máquina virtual del navegador, o iniciar una construcción que incluye el nombre nativo del paquete de este registro.

Probar Debian 13 (Trixie) en el navegador Construir una imagen que incluye gmap

Versiones, suites y repositorios

Cada fila es metadato del índice de paquetes para una versión, arquitectura, suite y repositorio. Nombres, URL y tamaños vienen de la fuente; un enlace es un punto de descarga que puede cambiar, no una redistribución de OpenFactory.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
2024-11-20+ds-2	trixie / main	amd64	Debian 13 · main · amd64	33 MiB	263 MiB	pool/main/g/gmap/gmap_2024-11-20+ds-2_amd64.deb
2024-11-20+ds-2	trixie / main	arm64	Debian 13 · main · arm64	6.7 MiB	60 MiB	pool/main/g/gmap/gmap_2024-11-20+ds-2_arm64.deb

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Sumas de comprobación y fechas de observación

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

2024-11-20+ds-2 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: d9a9df9a58e542968b581aee2ac75d14571b5ef5306fe021d1c9b6805926a01e

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' 'd9a9df9a58e542968b581aee2ac75d14571b5ef5306fe021d1c9b6805926a01e' 'gmap_2024-11-20+ds-2_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

2024-11-20+ds-2 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: cfdf716b9a5b80de04d24e5f4fdea7c3d1cdf12251f393e9d7e3efc14aecca63

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' 'cfdf716b9a5b80de04d24e5f4fdea7c3d1cdf12251f393e9d7e3efc14aecca63' 'gmap_2024-11-20+ds-2_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Completitud del registro

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Fuentes y procedencia

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 13 (Trixie) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Result: match verified
Debian 13 (Trixie) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Result: match verified