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Debian 13 (Trixie) native package

hinge

long read genome assembler based on hinging

Packages / Debian 13 (Trixie) / science / hinge

[Source: hinge]

Package: hinge (0.5.0-7+b4)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [github.com]

long read genome assembler based on hinging

Other Packages Related to hinge:

  • dep: [libc6] (>= 2.38)

    GNU C Library: Shared libraries

  • dep: [libfmt10] (>= 10.1.1+ds1)

    fast type-safe C++ formatting library -- library

  • dep: [libgcc-s1] (>= 3.0)

    GCC support library

  • dep: [libgomp1] (>= 4.2.1)

    GCC OpenMP (GOMP) support library

  • dep: [libstdc++6] (>= 13.1)

    GNU Standard C++ Library v3

  • dep: [zlib1g] (>= 1:1.1.4)

    compression library - runtime

  • dep: [python3]

    interactive high-level object-oriented language (default python3 version)

  • dep: [daligner]

    local alignment discovery between long nucleotide sequencing reads

  • dep: [dazzdb]

    manage nucleotide sequencing read data

  • dep: [dascrubber]

    alignment-based scrubbing pipeline for DNA sequencing reads

  • dep: [python3-numpy]

    Python library for numerical computations (Python 3)

  • dep: [python3-ujson]

    ultra fast JSON encoder and decoder for Python 3

  • dep: [python3-colormap]

    ease manipulation of matplotlib colormaps and color codecs (Python 3)

  • dep: [python3-pbcore]

    Python 3 library for processing PacBio data files

  • dep: [python3-networkx]

    tool to create, manipulate and study complex networks (Python3)

  • dep: [python3-matplotlib]

    Python based plotting system in a style similar to Matlab

Download hinge

ArchitecturePackage SizeInstalled SizeFiles
amd64466 KiB3.0 MiB[list of files]
arm64420 KiB3.0 MiB[list of files]

Rutas de archivos del paquete (76)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

  • /usr/bin/hinge
  • /usr/lib/hinge/add_groundtruth_json.py
  • /usr/lib/hinge/add_groundtruth.py
  • /usr/lib/hinge/clip_ends.py
  • /usr/lib/hinge/compute_n50_from_draft.py
  • /usr/lib/hinge/condense_graph_and_annotate.py
  • /usr/lib/hinge/condense_graph_annotate_clip_ends.py
  • /usr/lib/hinge/condense_graph_create_gfa_compute_n50.py
  • /usr/lib/hinge/condense_graph.py
  • /usr/lib/hinge/condense_graph_with_gt.py
  • /usr/lib/hinge/connected.py
  • /usr/lib/hinge/consensus
  • /usr/lib/hinge/correct_head.py
  • /usr/lib/hinge/create_bandage_file.py
  • /usr/lib/hinge/create_hgraph_nogt.py
  • /usr/lib/hinge/create_hgraph.py
  • /usr/lib/hinge/download_NCTC_pipeline.py
  • /usr/lib/hinge/draft_assembly
  • /usr/lib/hinge/draft_assembly_not_perfect.py
  • /usr/lib/hinge/draft_assembly.py
  • /usr/lib/hinge/draw2_pileup.py
  • /usr/lib/hinge/draw2_pileup_region.py
  • /usr/lib/hinge/draw2_pileup_w_repeat.py
  • /usr/lib/hinge/draw2.py
  • /usr/lib/hinge/draw_pileup_region_find_bridges.py
  • /usr/lib/hinge/draw_pileup_region.py
  • /usr/lib/hinge/fasta_to_fastq.py
  • /usr/lib/hinge/get_consensus_gfa.py
  • /usr/lib/hinge/get_draft_annotation.py
  • /usr/lib/hinge/get_draft_path_norevcomp.py
  • /usr/lib/hinge/get_draft_path.py
  • /usr/lib/hinge/get_maximal_reads
  • /usr/lib/hinge/get_NCTC_json.py
  • /usr/lib/hinge/get_single_strand.py
  • /usr/lib/hinge/hinging
  • /usr/lib/hinge/interface_utils.py
  • /usr/lib/hinge/longest_path.py
  • /usr/lib/hinge/merge_hinges.py
  • /usr/lib/hinge/parallel_draw_large.sh
  • /usr/lib/hinge/parallel_draw.sh
  • /usr/lib/hinge/parse_alignment.py
  • /usr/lib/hinge/parse.py
  • /usr/lib/hinge/parse_qv.py
  • /usr/lib/hinge/parse_read.py
  • /usr/lib/hinge/pileup.ipynb
  • /usr/lib/hinge/pipeline_consensus_norevcomp.py
  • /usr/lib/hinge/pipeline_consensus.py
  • /usr/lib/hinge/pipeline_nctc.py
  • /usr/lib/hinge/pruning_and_clipping_nanopore.py
  • /usr/lib/hinge/pruning_and_clipping.py
  • /usr/lib/hinge/random_condensation.py
  • /usr/lib/hinge/Reads_filter
  • /usr/lib/hinge/repeat_annotate_reads.py
  • /usr/lib/hinge/run_mapping2.py
  • /usr/lib/hinge/run_mapping3.py
  • /usr/lib/hinge/run_mapping.py
  • /usr/lib/hinge/run_parse_alignment.py
  • /usr/lib/hinge/run_parse_read.py
  • /usr/lib/hinge/split_las.py
  • /usr/lib/hinge/unitig.py
  • /usr/lib/hinge/Visualise_graph.py
  • /usr/share/doc/hinge/changelog.Debian.amd64.gz
  • /usr/share/doc/hinge/changelog.Debian.arm64.gz
  • /usr/share/doc/hinge/changelog.Debian.gz
  • /usr/share/doc/hinge/copyright
  • /usr/share/doc/hinge/examples/demo/ecoli_demo/run_norevcomp.sh
  • /usr/share/doc/hinge/examples/demo/ecoli_demo/run.sh
  • /usr/share/doc/hinge/examples/demo/ecoli_nanopore/run.sh
  • /usr/share/doc/hinge/examples/demo/ecoli_P4_demo/run.sh
  • /usr/share/doc/hinge/examples/demo/NCTC9657_demo/run.sh
  • /usr/share/doc/hinge/examples/demo/yeast_W303_demo/nominal.ini
  • /usr/share/doc/hinge/examples/demo/yeast_W303_demo/run.sh
  • /usr/share/doc/hinge/examples/utils/nominal.ini
  • /usr/share/doc/hinge/parameter_description.md.gz
  • /usr/share/doc/hinge/README.md.gz
  • /usr/share/man/man1/hinge.1.gz

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

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Versiones, suites y repositorios

Cada fila es metadato del índice de paquetes para una versión, arquitectura, suite y repositorio. Nombres, URL y tamaños vienen de la fuente; un enlace es un punto de descarga que puede cambiar, no una redistribución de OpenFactory.

VersionReleaseArchitectureRepositoryPackage sizeInstalled sizePublisher repository artifact
0.5.0-7+b4trixie / mainarm64Debian 13 · main · arm64420 KiB3.0 MiBpool/main/h/hinge/hinge_0.5.0-7+b4_arm64.deb
0.5.0-7+b3trixie / mainamd64Debian 13 · main · amd64466 KiB3.0 MiBpool/main/h/hinge/hinge_0.5.0-7+b3_amd64.deb

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Sumas de comprobación y fechas de observación

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

0.5.0-7+b4 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 4d7d78dafb24d5018caba9b686f26bfbf9fd4750b25ad642841dfb554331ab8c

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' '4d7d78dafb24d5018caba9b686f26bfbf9fd4750b25ad642841dfb554331ab8c' 'hinge_0.5.0-7+b4_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

0.5.0-7+b3 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 1c5d68715adc3b49c32dbadbd23a1899b2bbac8d712abf8f4a66d4ad8d7c8c68

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' '1c5d68715adc3b49c32dbadbd23a1899b2bbac8d712abf8f4a66d4ad8d7c8c68' 'hinge_0.5.0-7+b3_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Completitud del registro

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description
25/25
Artifact path and source digest
25/25
Dependency metadata
15/15
Package-file index
15/15
Homepage
5/5
License text
0/5
Source package or maintainer
10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Fuentes y procedencia

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

  • Debian 13 (Trixie) main amd64Sep 1, 2026

    Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: main/binary-amd64/Packages.xz
    Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
    Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
    Result: match verified

  • Debian 13 (Trixie) main arm64Sep 1, 2026

    Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: main/binary-arm64/Packages.xz
    Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
    Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
    Result: match verified

hinge Package for Debian 13 (Trixie) | OpenFactory