Debian 13 (Trixie) native package

python3-pairtools

Framework to process sequencing data from a Hi-C experiment

Packages / Debian 13 (Trixie) / python / python3-pairtools

[Source: pairtools]

Package: python3-pairtools (1.1.3-1+b1)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [github.com]

Similar packages:

[python3-pairtools-examples]
Process sequencing data from a Hi-C experiment (examples)

Framework to process sequencing data from a Hi-C experiment

Other Packages Related to python3-pairtools:

dep: [python3-standard-pipes]
pipes Standard Python Lib (Python 3)
dep: [libc6] (>= 2.14)
GNU C Library: Shared libraries
dep: [libgcc-s1] (>= 3.0)
GCC support library
dep: [libstdc++6] (>= 11)
GNU Standard C++ Library v3
dep: [python3] (<< 3.14)
interactive high-level object-oriented language (default python3 version)
dep: [python3] (>= 3.13~)
interactive high-level object-oriented language (default python3 version)
dep: [python3-bioframe]
library to enable flexible, scalable operations on genomic interval dataframes
dep: [python3-click]
Command-Line Interface Creation Kit - Python 3.x
dep: [python3-numpy]
Python library for numerical computations (Python 3)
dep: python3-numpy2-abi0
Package not available
dep: python3-numpy-abi9
Package not available
dep: [python3-pandas]
data structures for "relational" or "labeled" data
dep: [python3-pysam] (>= 0.20.0+ds-3~)
interface for the SAM/BAM sequence alignment and mapping format (Python 3)
dep: [python3-scipy]
scientific tools for Python 3
dep: [python3-yaml]
YAML parser and emitter for Python3
dep: [python3] [any]
interactive high-level object-oriented language (default python3 version)

sug: [python3-pairtools-examples] (>= 1.0.2)
Process sequencing data from a Hi-C experiment (examples)

Download python3-pairtools

Architecture	Package Size	Installed Size	Files
amd64	202 KiB	833 KiB	[list of files]

Rutas de archivos del paquete (55)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/pairtools
/usr/lib/python3/dist-packages/pairtools-1.1.3.dist-info/entry_points.txt
/usr/lib/python3/dist-packages/pairtools-1.1.3.dist-info/INSTALLER
/usr/lib/python3/dist-packages/pairtools-1.1.3.dist-info/METADATA
/usr/lib/python3/dist-packages/pairtools-1.1.3.dist-info/top_level.txt
/usr/lib/python3/dist-packages/pairtools-1.1.3.dist-info/WHEEL
/usr/lib/python3/dist-packages/pairtools/cli/dedup.py
/usr/lib/python3/dist-packages/pairtools/cli/filterbycov.py
/usr/lib/python3/dist-packages/pairtools/cli/flip.py
/usr/lib/python3/dist-packages/pairtools/cli/header.py
/usr/lib/python3/dist-packages/pairtools/cli/__init__.py
/usr/lib/python3/dist-packages/pairtools/cli/markasdup.py
/usr/lib/python3/dist-packages/pairtools/cli/merge.py
/usr/lib/python3/dist-packages/pairtools/cli/parse2.py
/usr/lib/python3/dist-packages/pairtools/cli/parse.py
/usr/lib/python3/dist-packages/pairtools/cli/phase.py
/usr/lib/python3/dist-packages/pairtools/cli/restrict.py
/usr/lib/python3/dist-packages/pairtools/cli/sample.py
/usr/lib/python3/dist-packages/pairtools/cli/scaling.py
/usr/lib/python3/dist-packages/pairtools/cli/select.py
/usr/lib/python3/dist-packages/pairtools/cli/sort.py
/usr/lib/python3/dist-packages/pairtools/cli/split.py
/usr/lib/python3/dist-packages/pairtools/cli/stats.py
/usr/lib/python3/dist-packages/pairtools/__init__.py
/usr/lib/python3/dist-packages/pairtools/lib/dedup_cython.cpython-313-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/pairtools/lib/dedup_cython.cpython-313-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/pairtools/lib/dedup_cython.pyx
/usr/lib/python3/dist-packages/pairtools/lib/dedup.py
/usr/lib/python3/dist-packages/pairtools/lib/fileio.py
/usr/lib/python3/dist-packages/pairtools/lib/filterbycov.py
/usr/lib/python3/dist-packages/pairtools/lib/headerops.py
/usr/lib/python3/dist-packages/pairtools/lib/__init__.py
/usr/lib/python3/dist-packages/pairtools/lib/pairsam_format.py
/usr/lib/python3/dist-packages/pairtools/lib/pairsio.py
/usr/lib/python3/dist-packages/pairtools/lib/parse.py
/usr/lib/python3/dist-packages/pairtools/lib/parse_pysam.cpython-313-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/pairtools/lib/parse_pysam.cpython-313-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/pairtools/lib/parse_pysam.pxd
/usr/lib/python3/dist-packages/pairtools/lib/parse_pysam.pyx
/usr/lib/python3/dist-packages/pairtools/lib/phase.py
/usr/lib/python3/dist-packages/pairtools/lib/regions.cpython-313-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/pairtools/lib/regions.cpython-313-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/pairtools/lib/regions.pyx
/usr/lib/python3/dist-packages/pairtools/lib/restrict.py
/usr/lib/python3/dist-packages/pairtools/lib/scaling.py
/usr/lib/python3/dist-packages/pairtools/lib/select.py
/usr/lib/python3/dist-packages/pairtools/lib/stats.py
/usr/lib/python3/dist-packages/pairtools/_logging.py
/usr/lib/python3/dist-packages/pairtools/__main__.py
/usr/share/doc/python3-pairtools/changelog.Debian.amd64.gz
/usr/share/doc/python3-pairtools/changelog.Debian.arm64.gz
/usr/share/doc/python3-pairtools/changelog.Debian.gz
/usr/share/doc/python3-pairtools/changelog.gz
/usr/share/doc/python3-pairtools/copyright
/usr/share/doc/python3-pairtools/README.test

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

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Versiones, suites y repositorios

Cada fila es metadato del índice de paquetes para una versión, arquitectura, suite y repositorio. Nombres, URL y tamaños vienen de la fuente; un enlace es un punto de descarga que puede cambiar, no una redistribución de OpenFactory.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
1.1.3-1+b1	trixie / main	amd64	Debian 13 · main · amd64	202 KiB	833 KiB	pool/main/p/pairtools/python3-pairtools_1.1.3-1+b1_amd64.deb

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Sumas de comprobación y fechas de observación

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

1.1.3-1+b1 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 413bfb5ff113c99270df2798fb8b32782b7627157892fc057e223d414550e9ce

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '413bfb5ff113c99270df2798fb8b32782b7627157892fc057e223d414550e9ce' 'python3-pairtools_1.1.3-1+b1_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Completitud del registro

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Fuentes y procedencia

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 13 (Trixie) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Result: match verified
Debian 13 (Trixie) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Result: match verified