Debian 13 (Trixie) native package

salmon

wicked-fast transcript quantification from RNA-seq data

Packages / Debian 13 (Trixie) / science / salmon

[Source: salmon]

Package: salmon (1.10.2+ds1-1+b5)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [github.com]

wicked-fast transcript quantification from RNA-seq data

Other Packages Related to salmon:

dep: [libboost-filesystem1.83.0] (>= 1.83.0)
filesystem operations (portable paths, iteration over directories, etc) in C++
dep: [libboost-iostreams1.83.0] (>= 1.83.0)
Boost.Iostreams Library
dep: [libboost-program-options1.83.0] (>= 1.83.0)
program options library for C++
dep: [libc6] (>= 2.38)
GNU C Library: Shared libraries
dep: [libgcc-s1] (>= 3.4)
GCC support library
dep: [libjemalloc2] (>= 5.0.0)
general-purpose scalable concurrent malloc(3) implementation
dep: [libstaden-read14t64] (>= 1.14.12)
Staden library for reading and writing DNA sequencing results
dep: [libstdc++6] (>= 14)
GNU Standard C++ Library v3
dep: [libtbb12] (>= 2021.4.0)
parallelism library for C++ - runtime files
dep: [libtbbmalloc2] (>= 2017~U7)
parallelism helper library for C++ - runtime files
dep: [zlib1g] (>= 1:1.1.4)
compression library - runtime
dep: [libjs-sphinxdoc] (>= 8.1)
JavaScript support for Sphinx documentation

Download salmon

Architecture	Package Size	Installed Size	Files
amd64	3.3 MiB	13 MiB	[list of files]
arm64	3.0 MiB	11 MiB	[list of files]

Rutas de archivos del paquete (55)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/salmon
/usr/share/doc-base/salmon.salmon
/usr/share/doc/salmon/changelog.Debian.amd64.gz
/usr/share/doc/salmon/changelog.Debian.arm64.gz
/usr/share/doc/salmon/changelog.Debian.gz
/usr/share/doc/salmon/copyright
/usr/share/doc/salmon/examples/reads_1.fastq
/usr/share/doc/salmon/examples/reads_2.fastq
/usr/share/doc/salmon/examples/sample_alignments.bam
/usr/share/doc/salmon/examples/transcripts.fasta
/usr/share/doc/salmon/html/alevin.html
/usr/share/doc/salmon/html/building.html
/usr/share/doc/salmon/html/file_formats.html
/usr/share/doc/salmon/html/genindex.html
/usr/share/doc/salmon/html/_images/ReadLibraryIllustration.png
/usr/share/doc/salmon/html/index.html
/usr/share/doc/salmon/html/library_type.html
/usr/share/doc/salmon/html/objects.inv
/usr/share/doc/salmon/html/salmon.html
/usr/share/doc/salmon/html/search.html
/usr/share/doc/salmon/html/searchindex.js
/usr/share/doc/salmon/html/_sources/alevin.rst.txt
/usr/share/doc/salmon/html/_sources/building.rst.txt
/usr/share/doc/salmon/html/_sources/file_formats.rst.txt
/usr/share/doc/salmon/html/_sources/index.rst.txt
/usr/share/doc/salmon/html/_sources/library_type.rst.txt
/usr/share/doc/salmon/html/_sources/salmon.rst.txt
/usr/share/doc/salmon/html/_static/basic.css
/usr/share/doc/salmon/html/_static/classic.css
/usr/share/doc/salmon/html/_static/copybutton.js
/usr/share/doc/salmon/html/_static/default.css
/usr/share/doc/salmon/html/_static/doctools.js
/usr/share/doc/salmon/html/_static/documentation_options.js
/usr/share/doc/salmon/html/_static/file.png
/usr/share/doc/salmon/html/_static/language_data.js
/usr/share/doc/salmon/html/_static/logo.png
/usr/share/doc/salmon/html/_static/menu.js
/usr/share/doc/salmon/html/_static/minus.png
/usr/share/doc/salmon/html/_static/plus.png
/usr/share/doc/salmon/html/_static/pydoctheme.css
/usr/share/doc/salmon/html/_static/pydoctheme_dark.css
/usr/share/doc/salmon/html/_static/pygments.css
/usr/share/doc/salmon/html/_static/pygments_dark.css
/usr/share/doc/salmon/html/_static/py.png
/usr/share/doc/salmon/html/_static/py.svg
/usr/share/doc/salmon/html/_static/search-focus.js
/usr/share/doc/salmon/html/_static/searchtools.js
/usr/share/doc/salmon/html/_static/sidebar.js
/usr/share/doc/salmon/html/_static/sphinx_highlight.js
/usr/share/doc/salmon/html/_static/themetoggle.js
/usr/share/man/man1/salmon.1.gz
/usr/share/man/man1/salmon-index.1.gz
/usr/share/man/man1/salmon-quant.1.gz
/usr/share/man/man1/salmon-swim.1.gz
/usr/share/salmon/build-test-logs/LastTest.log

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Usar este paquete

OpenFactory puede arrancar este sistema operativo en una máquina virtual del navegador, o iniciar una construcción que incluye el nombre nativo del paquete de este registro.

Probar Debian 13 (Trixie) en el navegador Construir una imagen que incluye salmon

Versiones, suites y repositorios

Cada fila es metadato del índice de paquetes para una versión, arquitectura, suite y repositorio. Nombres, URL y tamaños vienen de la fuente; un enlace es un punto de descarga que puede cambiar, no una redistribución de OpenFactory.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
1.10.2+ds1-1+b5	trixie / main	amd64	Debian 13 · main · amd64	3.3 MiB	13 MiB	pool/main/s/salmon/salmon_1.10.2+ds1-1+b5_amd64.deb
1.10.2+ds1-1+b5	trixie / main	arm64	Debian 13 · main · arm64	3.0 MiB	11 MiB	pool/main/s/salmon/salmon_1.10.2+ds1-1+b5_arm64.deb

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Sumas de comprobación y fechas de observación

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

1.10.2+ds1-1+b5 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 859d886f499b86b5caefe545360aceed858c1c1f155add98b15e2e3658f165ee

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '859d886f499b86b5caefe545360aceed858c1c1f155add98b15e2e3658f165ee' 'salmon_1.10.2+ds1-1+b5_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

1.10.2+ds1-1+b5 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 9cbede2dc762da5222664213165c984e510c2da793134550f38a9f42afc5b568

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '9cbede2dc762da5222664213165c984e510c2da793134550f38a9f42afc5b568' 'salmon_1.10.2+ds1-1+b5_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Completitud del registro

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Fuentes y procedencia

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 13 (Trixie) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Result: match verified
Debian 13 (Trixie) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Result: match verified