Linux workstation

Debian 13 (Trixie) native package

simka

comparative metagenomics method dedicated to NGS datasets

Packages / Debian 13 (Trixie) / science / simka

[Source: simka]

Package: simka (1.5.3-8+b3)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [github.com]

Similar packages:

  • [simkamin]

    approximate comparative metagenomics method dedicated to NGS datasets

comparative metagenomics method dedicated to NGS datasets

Other Packages Related to simka:

  • dep: [libc6] (>= 2.38)

    GNU C Library: Shared libraries

  • dep: [libgatbcore3] (>= 1.4.2)

    dynamic library of the Genome Analysis Toolbox

  • dep: [libgcc-s1] (>= 3.0)

    GCC support library

  • dep: [libhdf5-310] (>= 1.14.3)

    HDF5 C runtime files - serial version

  • dep: [libstdc++6] (>= 14)

    GNU Standard C++ Library v3

  • dep: [zlib1g] (>= 1:1.2.6)

    compression library - runtime

Download simka

ArchitecturePackage SizeInstalled SizeFiles
amd64425 KiB2.5 MiB[list of files]
arm64386 KiB2.5 MiB[list of files]

Rutas de archivos del paquete (26)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

  • /usr/bin/simka
  • /usr/bin/simkaCount
  • /usr/bin/simkaCountProcess
  • /usr/bin/simkaMerge
  • /usr/bin/simkaMinCore
  • /usr/share/doc/simka/changelog.Debian.amd64.gz
  • /usr/share/doc/simka/changelog.Debian.arm64.gz
  • /usr/share/doc/simka/changelog.Debian.gz
  • /usr/share/doc/simka/copyright
  • /usr/share/doc/simka/example/A.fasta.gz
  • /usr/share/doc/simka/example/B.fasta.gz
  • /usr/share/doc/simka/example/C.fasta.gz
  • /usr/share/doc/simka/example/dataset_metadata.csv
  • /usr/share/doc/simka/example/D_paired_1.fasta.gz
  • /usr/share/doc/simka/example/D_paired_2.fasta.gz
  • /usr/share/doc/simka/example/potara_job/sge/job_count.bash
  • /usr/share/doc/simka/example/potara_job/sge/job_merge.bash
  • /usr/share/doc/simka/example/potara_job/tgcc/job_count.bash
  • /usr/share/doc/simka/example/potara_job/tgcc/job_merge.bash
  • /usr/share/doc/simka/example/simka_input.txt
  • /usr/share/doc/simka/example/simple_test.sh
  • /usr/share/man/man1/simka.1.gz
  • /usr/share/man/man1/simkaCount.1.gz
  • /usr/share/man/man1/simkaCountProcess.1.gz
  • /usr/share/man/man1/simkaMerge.1.gz
  • /usr/share/man/man1/simkaMinCore.1.gz

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Usar este paquete

OpenFactory puede arrancar este sistema operativo en una máquina virtual del navegador, o iniciar una construcción que incluye el nombre nativo del paquete de este registro.

Probar Debian 13 (Trixie) en el navegadorConstruir una imagen que incluye simka

Versiones, suites y repositorios

Cada fila es metadato del índice de paquetes para una versión, arquitectura, suite y repositorio. Nombres, URL y tamaños vienen de la fuente; un enlace es un punto de descarga que puede cambiar, no una redistribución de OpenFactory.

VersionReleaseArchitectureRepositoryPackage sizeInstalled sizePublisher repository artifact
1.5.3-8+b3trixie / mainamd64Debian 13 · main · amd64425 KiB2.5 MiBpool/main/s/simka/simka_1.5.3-8+b3_amd64.deb
1.5.3-8+b3trixie / mainarm64Debian 13 · main · arm64386 KiB2.5 MiBpool/main/s/simka/simka_1.5.3-8+b3_arm64.deb

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Sumas de comprobación y fechas de observación

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

1.5.3-8+b3 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: d650100efdf98c5c6401eede1af3485494802848e278586e5f8e31e1ac3977bf

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' 'd650100efdf98c5c6401eede1af3485494802848e278586e5f8e31e1ac3977bf' 'simka_1.5.3-8+b3_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

1.5.3-8+b3 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 3812f9cce9cb079f7b98a1b4ab48c993274766fdcaf006aa59ca4dff3fd47b6a

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' '3812f9cce9cb079f7b98a1b4ab48c993274766fdcaf006aa59ca4dff3fd47b6a' 'simka_1.5.3-8+b3_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Completitud del registro

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description
25/25
Artifact path and source digest
25/25
Dependency metadata
15/15
Package-file index
15/15
Homepage
5/5
License text
0/5
Source package or maintainer
10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Fuentes y procedencia

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

  • Debian 13 (Trixie) main amd64Sep 1, 2026

    Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: main/binary-amd64/Packages.xz
    Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
    Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
    Result: match verified

  • Debian 13 (Trixie) main arm64Sep 1, 2026

    Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: main/binary-arm64/Packages.xz
    Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
    Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
    Result: match verified