Debian 13 (Trixie) native package

staden

DNA sequence assembly (Gap4/Gap5), editing and analysis tools

Packages / Debian 13 (Trixie) / science / staden

[Source: staden]

Package: staden (2.0.0+b11-5+b1)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [sourceforge.net]

Similar packages:

[staden-common]
Architecture independent files for Staden

DNA sequence assembly (Gap4/Gap5), editing and analysis tools

Other Packages Related to staden:

dep: [libc6] (>= 2.38)
GNU C Library: Shared libraries
dep: [libgcc-s1] (>= 3.0)
GCC support library
dep: [liblzma5] (>= 5.1.1alpha+20120614)
XZ-format compression library
dep: [libpng16-16t64] (>= 1.6.2)
PNG library - runtime (version 1.6)
dep: [libstaden-read14t64] (>= 1.14.12)
Staden library for reading and writing DNA sequencing results
dep: [libstdc++6] (>= 5)
GNU Standard C++ Library v3
dep: [libtcl8.6] (>= 8.6.0)
Tcl (the Tool Command Language) v8.6 - run-time library files
dep: [libtk8.6] (>= 8.6.0)
Tk toolkit for Tcl and X11 v8.6 - run-time files
dep: [libx11-6]
X11 client-side library
dep: [zlib1g] (>= 1:1.1.4)
compression library - runtime
dep: [staden-common] (= 2.0.0+b11-5)
Architecture independent files for Staden
dep: [staden-io-lib-utils]
programs for manipulating DNA sequencing files
dep: [tklib]
standard Tk Library

rec: [med-config]
Debian Med general config package

Download staden

Architecture	Package Size	Installed Size	Files
amd64	1.6 MiB	4.6 MiB	[list of files]
arm64	1.5 MiB	5.9 MiB	[list of files]

Rutas de archivos del paquete (67)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/gap4
/usr/bin/gap5
/usr/bin/pregap4
/usr/bin/staden
/usr/bin/trev
/usr/lib/debian-med/bin/spin
/usr/lib/debian-med/share/man/man1/spin.1.gz
/usr/lib/staden/bin/alfsplit
/usr/lib/staden/bin/copy_db
/usr/lib/staden/bin/copy_reads
/usr/lib/staden/bin/create_emboss_files
/usr/lib/staden/bin/eba
/usr/lib/staden/bin/find_renz
/usr/lib/staden/bin/gap4
/usr/lib/staden/bin/gap5
/usr/lib/staden/bin/gap5_cmd
/usr/lib/staden/bin/getABIcomment
/usr/lib/staden/bin/getABIdate
/usr/lib/staden/bin/getABIfield
/usr/lib/staden/bin/getABISampleName
/usr/lib/staden/bin/get_scf_field
/usr/lib/staden/bin/hetins
/usr/lib/staden/bin/init_exp
/usr/lib/staden/bin/make_weights
/usr/lib/staden/bin/mutscan
/usr/lib/staden/bin/polyA_clip
/usr/lib/staden/bin/prefinish
/usr/lib/staden/bin/pregap4
/usr/lib/staden/bin/qclip
/usr/lib/staden/bin/screen_seq
/usr/lib/staden/bin/spin
/usr/lib/staden/bin/staden_convert
/usr/lib/staden/bin/stash
/usr/lib/staden/bin/stops
/usr/lib/staden/bin/tg_index
/usr/lib/staden/bin/tg_index.bin
/usr/lib/staden/bin/tracediff
/usr/lib/staden/bin/trev
/usr/lib/staden/bin/vector_clip
/usr/lib/staden/libcopy_reads.so
/usr/lib/staden/libgap5.so
/usr/lib/staden/libgap.so
/usr/lib/staden/libg.so
/usr/lib/staden/libhaplo.so
/usr/lib/staden/libmisc.so
/usr/lib/staden/libmutlib.so
/usr/lib/staden/libprefinish.so
/usr/lib/staden/libprimer3.so
/usr/lib/staden/libseq_utils.so
/usr/lib/staden/libspin.so
/usr/lib/staden/libtext_utils.so
/usr/lib/staden/libtk_utils.so
/usr/share/applications/gap4.desktop
/usr/share/applications/gap5.desktop
/usr/share/applications/pregap4.desktop
/usr/share/applications/trev.desktop
/usr/share/bash-completion/completions/staden
/usr/share/doc/staden/changelog.Debian.arm64.gz
/usr/share/doc/staden/changelog.Debian.gz
/usr/share/doc/staden/changelog.gz
/usr/share/doc/staden/copyright
/usr/share/doc/staden/README.Debian
/usr/share/man/man1/gap4.1.gz
/usr/share/man/man1/gap5.1.gz
/usr/share/man/man1/pregap4.1.gz
/usr/share/man/man1/trev.1.gz
/usr/share/staden/icon4bl.svg

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Usar este paquete

OpenFactory puede arrancar este sistema operativo en una máquina virtual del navegador, o iniciar una construcción que incluye el nombre nativo del paquete de este registro.

Probar Debian 13 (Trixie) en el navegador Construir una imagen que incluye staden

Versiones, suites y repositorios

Cada fila es metadato del índice de paquetes para una versión, arquitectura, suite y repositorio. Nombres, URL y tamaños vienen de la fuente; un enlace es un punto de descarga que puede cambiar, no una redistribución de OpenFactory.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
2.0.0+b11-5+b1	trixie / main	arm64	Debian 13 · main · arm64	1.5 MiB	5.9 MiB	pool/main/s/staden/staden_2.0.0+b11-5+b1_arm64.deb
2.0.0+b11-5	trixie / main	amd64	Debian 13 · main · amd64	1.6 MiB	4.6 MiB	pool/main/s/staden/staden_2.0.0+b11-5_amd64.deb

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Sumas de comprobación y fechas de observación

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

2.0.0+b11-5+b1 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: cdaed227d9f09ce82a5acbfcd1b730354234ac915f79cd8e519325ee9fbef78f

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' 'cdaed227d9f09ce82a5acbfcd1b730354234ac915f79cd8e519325ee9fbef78f' 'staden_2.0.0+b11-5+b1_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

2.0.0+b11-5 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: e272dfed3f9998ecbd8bcbafe92eba048f7230f3c86af06202dc93d8f9726360

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' 'e272dfed3f9998ecbd8bcbafe92eba048f7230f3c86af06202dc93d8f9726360' 'staden_2.0.0+b11-5_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Completitud del registro

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Fuentes y procedencia

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 13 (Trixie) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Result: match verified
Debian 13 (Trixie) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Result: match verified