Debian 13 (Trixie) native package

tnseq-transit

statistical calculations of essentiality of genes or genomic regions

Packages / Debian 13 (Trixie) / science / tnseq-transit

Package: tnseq-transit (3.3.12-1)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [saclab.tamu.edu]

statistical calculations of essentiality of genes or genomic regions

Other Packages Related to tnseq-transit:

dep: [python3-matplotlib]
Python based plotting system in a style similar to Matlab
dep: [python3-numpy]
Python library for numerical computations (Python 3)
dep: [python3-pil]
Python Imaging Library (Python3)
dep: [python3-pubsub]
Python 3 publish-subcribe library
dep: [python3-scipy]
scientific tools for Python 3
dep: [python3-sklearn]
Python modules for machine learning and data mining - Python 3
dep: [python3-statsmodels]
Python3 module for the estimation of statistical models
dep: [python3-wheel]
built-package format for Python
dep: [python3-wxgtk4.0]
Python 3 interface to the wxWidgets Cross-platform C++ GUI toolkit
dep: [python3] [any]
interactive high-level object-oriented language (default python3 version)
dep: [bwa]
Burrows-Wheeler Aligner

Download tnseq-transit

Architecture	Package Size	Installed Size	Files
amd64	17 MiB	96 MiB	[list of files]
arm64	17 MiB	96 MiB	[list of files]

Rutas de archivos del paquete (107)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/transit
/usr/bin/transit-tpp
/usr/lib/python3/dist-packages/pytpp/__init__.py
/usr/lib/python3/dist-packages/pytpp/__main__.py
/usr/lib/python3/dist-packages/pytpp/tpp_gui.py
/usr/lib/python3/dist-packages/pytpp/tpp_tools.py
/usr/lib/python3/dist-packages/pytransit/analysis/anova.py
/usr/lib/python3/dist-packages/pytransit/analysis/base.py
/usr/lib/python3/dist-packages/pytransit/analysis/binomial.py
/usr/lib/python3/dist-packages/pytransit/analysis/CGI.py
/usr/lib/python3/dist-packages/pytransit/analysis/corrplot.py
/usr/lib/python3/dist-packages/pytransit/analysis/example.py
/usr/lib/python3/dist-packages/pytransit/analysis/gi.py
/usr/lib/python3/dist-packages/pytransit/analysis/griffin.py
/usr/lib/python3/dist-packages/pytransit/analysis/gumbel.py
/usr/lib/python3/dist-packages/pytransit/analysis/heatmap.py
/usr/lib/python3/dist-packages/pytransit/analysis/hmm.py
/usr/lib/python3/dist-packages/pytransit/analysis/__init__.py
/usr/lib/python3/dist-packages/pytransit/analysis/normalize.py
/usr/lib/python3/dist-packages/pytransit/analysis/norm.py
/usr/lib/python3/dist-packages/pytransit/analysis/pathway_enrichment.py
/usr/lib/python3/dist-packages/pytransit/analysis/rankproduct.py
/usr/lib/python3/dist-packages/pytransit/analysis/resampling.py
/usr/lib/python3/dist-packages/pytransit/analysis/tn5gaps.py
/usr/lib/python3/dist-packages/pytransit/analysis/tnseq_stats.py
/usr/lib/python3/dist-packages/pytransit/analysis/ttnfitness.py
/usr/lib/python3/dist-packages/pytransit/analysis/utest.py
/usr/lib/python3/dist-packages/pytransit/analysis/zinb.py
/usr/lib/python3/dist-packages/pytransit/convert/base.py
/usr/lib/python3/dist-packages/pytransit/convert/gff_to_prot_table.py
/usr/lib/python3/dist-packages/pytransit/convert/__init__.py
/usr/lib/python3/dist-packages/pytransit/data/CGI/IDs.H37Rv.CRISPRi.lib.txt
/usr/lib/python3/dist-packages/pytransit/data/CGI/RIF_D1_combined_counts.txt
/usr/lib/python3/dist-packages/pytransit/data/CGI/samples_metadata.txt
/usr/lib/python3/dist-packages/pytransit/data/CGI/sgRNA_info.txt
/usr/lib/python3/dist-packages/pytransit/data/CGI/uninduced_ATC_counts.txt
/usr/lib/python3/dist-packages/pytransit/data/cholesterol_glycerol_combined.dat
/usr/lib/python3/dist-packages/pytransit/data/cholesterol_H37Rv_merged.wig
/usr/lib/python3/dist-packages/pytransit/data/cholesterol_H37Rv_rep1.wig
/usr/lib/python3/dist-packages/pytransit/data/cholesterol_H37Rv_rep2.wig
/usr/lib/python3/dist-packages/pytransit/data/cholesterol_H37Rv_rep3.wig
/usr/lib/python3/dist-packages/pytransit/data/COG_roles.dat
/usr/lib/python3/dist-packages/pytransit/data/glycerol_H37Rv_merged.wig
/usr/lib/python3/dist-packages/pytransit/data/glycerol_H37Rv_rep1.wig
/usr/lib/python3/dist-packages/pytransit/data/glycerol_H37Rv_rep2.wig
/usr/lib/python3/dist-packages/pytransit/data/GO_associated_Rvs-3-11-18.txt
/usr/lib/python3/dist-packages/pytransit/data/GO_associated_Rvs.csv
/usr/lib/python3/dist-packages/pytransit/data/GO_term_names.dat
/usr/lib/python3/dist-packages/pytransit/data/GO_terms_for_each_Rv.obo-3-11-18.txt
/usr/lib/python3/dist-packages/pytransit/data/H37Rv_COG_roles.dat
/usr/lib/python3/dist-packages/pytransit/data/H37Rv_GO_terms.txt
/usr/lib/python3/dist-packages/pytransit/data/H37Rv.sanger_associated_RVS.csv
/usr/lib/python3/dist-packages/pytransit/data/H37Rv_sanger_roles.dat
/usr/lib/python3/dist-packages/pytransit/data/iron_combined_wig4.txt
/usr/lib/python3/dist-packages/pytransit/data/iron_samples_metadata.txt
/usr/lib/python3/dist-packages/pytransit/data/README.md
/usr/lib/python3/dist-packages/pytransit/data/samples_metadata_cg_covar.txt
/usr/lib/python3/dist-packages/pytransit/data/samples_metadata_cg_interactions.txt
/usr/lib/python3/dist-packages/pytransit/data/samples_metadata_cg.txt
/usr/lib/python3/dist-packages/pytransit/data/sanger_roles.dat
/usr/lib/python3/dist-packages/pytransit/data/smeg_COG_roles.dat
/usr/lib/python3/dist-packages/pytransit/data/smeg_GO_terms.txt
/usr/lib/python3/dist-packages/pytransit/DejaVuSans.ttf
/usr/lib/python3/dist-packages/pytransit/draw_trash.py
/usr/lib/python3/dist-packages/pytransit/export/base.py
/usr/lib/python3/dist-packages/pytransit/export/combined_wig.py
/usr/lib/python3/dist-packages/pytransit/export/igv.py
/usr/lib/python3/dist-packages/pytransit/export/__init__.py
/usr/lib/python3/dist-packages/pytransit/export/mean_counts.py
/usr/lib/python3/dist-packages/pytransit/export/prot_table.py
/usr/lib/python3/dist-packages/pytransit/fileDisplay.py
/usr/lib/python3/dist-packages/pytransit/generic_tools/file_system_py.py
/usr/lib/python3/dist-packages/pytransit/generic_tools/__init__.py
/usr/lib/python3/dist-packages/pytransit/genomes/BCG.fna
/usr/lib/python3/dist-packages/pytransit/genomes/BCG.prot_table
/usr/lib/python3/dist-packages/pytransit/genomes/genomes.html
/usr/lib/python3/dist-packages/pytransit/genomes/H37RvBD.fna
/usr/lib/python3/dist-packages/pytransit/genomes/H37RvBD_mod3.prot_table
/usr/lib/python3/dist-packages/pytransit/genomes/H37RvBD.prot_table
/usr/lib/python3/dist-packages/pytransit/genomes/H37Rv.fna
/usr/lib/python3/dist-packages/pytransit/genomes/H37RvMA2.fna
/usr/lib/python3/dist-packages/pytransit/genomes/H37RvMA2.prot_table
/usr/lib/python3/dist-packages/pytransit/genomes/H37Rv.prot_table
/usr/lib/python3/dist-packages/pytransit/genomes/mc2_155_tamu.fna
/usr/lib/python3/dist-packages/pytransit/genomes/mc2_155_tamu.prot_table
/usr/lib/python3/dist-packages/pytransit/images.py
/usr/lib/python3/dist-packages/pytransit/__init__.py
/usr/lib/python3/dist-packages/pytransit/__main__.py
/usr/lib/python3/dist-packages/pytransit/norm_tools.py
/usr/lib/python3/dist-packages/pytransit/qcDisplay.py
/usr/lib/python3/dist-packages/pytransit/stat_tools.py
/usr/lib/python3/dist-packages/pytransit/tnseq_tools.py
/usr/lib/python3/dist-packages/pytransit/transit_gui.py
/usr/lib/python3/dist-packages/pytransit/transit_tools.py
/usr/lib/python3/dist-packages/pytransit/trash.py
/usr/lib/python3/dist-packages/pytransit/view_trash.py
/usr/lib/python3/dist-packages/transit1-3.3.12.egg-info/dependency_links.txt
/usr/lib/python3/dist-packages/transit1-3.3.12.egg-info/entry_points.txt
/usr/lib/python3/dist-packages/transit1-3.3.12.egg-info/PKG-INFO
/usr/lib/python3/dist-packages/transit1-3.3.12.egg-info/requires.txt
/usr/lib/python3/dist-packages/transit1-3.3.12.egg-info/top_level.txt
/usr/share/doc/tnseq-transit/changelog.Debian.gz
/usr/share/doc/tnseq-transit/changelog.gz
/usr/share/doc/tnseq-transit/copyright
/usr/share/doc/tnseq-transit/README.Debian
/usr/share/man/man1/transit.1.gz
/usr/share/man/man1/transit-tpp.1.gz

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Usar este paquete

OpenFactory puede arrancar este sistema operativo en una máquina virtual del navegador, o iniciar una construcción que incluye el nombre nativo del paquete de este registro.

Probar Debian 13 (Trixie) en el navegador Construir una imagen que incluye tnseq-transit

Versiones, suites y repositorios

Cada fila es metadato del índice de paquetes para una versión, arquitectura, suite y repositorio. Nombres, URL y tamaños vienen de la fuente; un enlace es un punto de descarga que puede cambiar, no una redistribución de OpenFactory.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
3.3.12-1	trixie / main	amd64	Debian 13 · main · amd64	17 MiB	96 MiB	pool/main/t/tnseq-transit/tnseq-transit_3.3.12-1_amd64.deb
3.3.12-1	trixie / main	arm64	Debian 13 · main · arm64	17 MiB	96 MiB	pool/main/t/tnseq-transit/tnseq-transit_3.3.12-1_arm64.deb

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Sumas de comprobación y fechas de observación

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

3.3.12-1 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: e339a6d243e8dc13cf761a01e62f44f70c389e8e716d8c16fa5a873c8d69a8c5

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' 'e339a6d243e8dc13cf761a01e62f44f70c389e8e716d8c16fa5a873c8d69a8c5' 'tnseq-transit_3.3.12-1_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

3.3.12-1 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: bb3b9d050fbb156d7d8563ae479cc883bc8b6872368da1a754067e97d605d08f

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' 'bb3b9d050fbb156d7d8563ae479cc883bc8b6872368da1a754067e97d605d08f' 'tnseq-transit_3.3.12-1_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Completitud del registro

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Fuentes y procedencia

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 13 (Trixie) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Result: match verified
Debian 13 (Trixie) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Result: match verified