Debian 13 (Trixie) native package

trinityrnaseq

RNA-Seq De novo Assembly

Packages / Debian 13 (Trixie) / science / trinityrnaseq

Package: trinityrnaseq

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [github.com]

RNA-Seq De novo Assembly

Ningún registro publicado coincide con este filtro de suite y arquitectura.

Rutas de archivos del paquete (526)

Showing the first 250 sorted package-associated paths. Use file search to locate a specific path.

/usr/bin/BubbleUpClustering
/usr/bin/Chrysalis
/usr/bin/CreateIwormFastaBundle
/usr/bin/FastaToDeBruijn
/usr/bin/fastaToKmerCoverageStats
/usr/bin/GraphFromFasta
/usr/bin/inchworm
/usr/bin/QuantifyGraph
/usr/bin/ReadsToTranscripts
/usr/bin/Trinity
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/add_annotations_to_GO_and_lengths_file.R
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/add_annot_to_trans_id.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/add_blastx_hit_to_trinity_id.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/analyze_diff_expr.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/assign_tissue_specific.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/cluster_sample_data/cleanme.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/cluster_sample_data/Islam_scde_data/es.mef.fpkm.matrix
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/cluster_sample_data/MLF_ESC_NPC.cuff.genes.fpkm.matrix.gz
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/cluster_sample_data/orig.samples.txt
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/cluster_sample_data/runMe.sh
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/cluster_sample_data/samples.txt
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/compare_gene_trans_DE_ranks.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/cut_tree_into_clusters.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/define_clusters_by_cutting_tree.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/DE_graph_to_dot.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/deprecated/prep_n_run_GOplot.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/dexseq_given_bams.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/diff_expr_analysis_to_heatmap_html.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/diff_express.cgi
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/downsample_count_matrix.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/DTE_to_DTU.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/extract_GO_enriched_genes.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/filter_diff_expr.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/filter_matrix_min_sum_rowcounts.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/get_tissue_enriched_DE_one_vs_all.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/get_transcript_lengths.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/Glimma.Trinity.Rscript
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/GOplot.Rscript
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/identify_diff_isoform_splicing.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/log2_transform_matrix.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/log2_transform_median_center_fpkm_matrix.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/matrix_to_gene_plots.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/merge_matrices.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/merge_subclusters.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/pairwise_summaries/add_counts_to_classes.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/pairwise_summaries/class_to_separate_fpkm_matrices.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/pairwise_summaries/DE_pair_counts_to_matrix.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/pairwise_summaries/EBSeq_to_pairwise_summary.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/pairwise_summaries/edgeR_to_pairwise_summary.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/pairwise_summaries/examine_rank_correlation.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/pairwise_summaries/extract_venn_agree_from_summaries.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/pairwise_summaries/mmdiff_to_pairwise_summary.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/pairwise_summaries/notes
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/pairwise_summaries/pairwise_DE_summary_to_DE_classification.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/pairwise_summaries/venn_pairwise_summaries.pair_stats.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/pairwise_summaries/venn_pairwise_summaries.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/plot_all_DE_MAplots.Rscript
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/plot_all_DE_volcanos.Rscript
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/plot_expression_patterns.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/plot_log2FC_hist.Rscript
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/prune_isoforms_fasta.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/prune_isoforms_gtf.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/PtR
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/rank_roku_by_expr.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/R/edgeR_funcs.R
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/R/edgeR.TMM.minimal.R
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/remove_batch_effects_from_count_matrix.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/rename_matrix_column_labels.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/rename_matrix_feature_identifiers.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/replicates_to_sample_averages_matrix.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/R/get_cluster_info.R
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/R/heatmap.3.R
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/R/jaccard_distance.R
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/R/manually_define_clusters.R
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/R/misc_rnaseq_funcs.R
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/ROKU.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/R/pairs3.R
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/R/rnaseq_plot_funcs.R
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/R/test.heatmap.3.R
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/R/tests/test_heatmap_w_pca.R
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/run_DE_analysis.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/run_GOseq.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/run_TMM_normalization_write_FPKM_matrix.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/R/vioplot2.R
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/stratify_diff_expression.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/subcluster_to_canvasXpress_html.make_index_html.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/subcluster_to_canvasXpress_html.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/summarize_diff_expr_across_min_threshold_ranges.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/sum_tech_replicates.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/TissueEnrichment/DE_graph_to_dot.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/TissueEnrichment/DE_results_to_pairwise_summary.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/TissueEnrichment/group_isoforms_by_tissue_enrichment.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/TissueEnrichment/pairwise_DE_summary_to_DE_classification.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/TissueEnrichment/README.md
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/validate_UP_subset.Rscript
/usr/lib/trinityrnaseq/Analysis/FL_reconstruction_analysis/compute_oracle.pl
/usr/lib/trinityrnaseq/Analysis/FL_reconstruction_analysis/count_by_expression_quintile.pl
/usr/lib/trinityrnaseq/Analysis/FL_reconstruction_analysis/FL_trans_analysis_pipeline.pl
/usr/lib/trinityrnaseq/Analysis/FL_reconstruction_analysis/fusion_comparisons_via_maps_files.pl
/usr/lib/trinityrnaseq/Analysis/FL_reconstruction_analysis/get_genes_from_maps_file.pl
/usr/lib/trinityrnaseq/Analysis/FL_reconstruction_analysis/maps_file_to_paralog_representation.pl
/usr/lib/trinityrnaseq/Analysis/FL_reconstruction_analysis/oracle_counter.pl
/usr/lib/trinityrnaseq/Analysis/FL_reconstruction_analysis/R/boot.tree.R
/usr/lib/trinityrnaseq/Analysis/FL_reconstruction_analysis/tier_gene_trans_alignments.pl
/usr/lib/trinityrnaseq/Analysis/FL_reconstruction_analysis/tier_gene_trans_alignments.tiers_to_boxplot.pl
/usr/lib/trinityrnaseq/Analysis/FL_reconstruction_analysis/util/blat_full_length_mappings.pl
/usr/lib/trinityrnaseq/Analysis/FL_reconstruction_analysis/util/blat_map_filter_with_isoforms.pl
/usr/lib/trinityrnaseq/Analysis/FL_reconstruction_analysis/util/blat_psl_to_align_summary_stats.pl
/usr/lib/trinityrnaseq/Analysis/FL_reconstruction_analysis/util/blat_query_top_hit_extractor.pl
/usr/lib/trinityrnaseq/Analysis/FL_reconstruction_analysis/util/blat_top_tier_genes.pl
/usr/lib/trinityrnaseq/Analysis/SuperTranscripts/AllelicVariants/run_variant_calling.py
/usr/lib/trinityrnaseq/Analysis/SuperTranscripts/AllelicVariants/util/clean_bam.pl
/usr/lib/trinityrnaseq/Analysis/SuperTranscripts/AllelicVariants/VCF_to_annotated_SNP_report.pl
/usr/lib/trinityrnaseq/Analysis/SuperTranscripts/DTU/dexseq_wrapper.pl
/usr/lib/trinityrnaseq/Analysis/SuperTranscripts/DTU/README.md
/usr/lib/trinityrnaseq/Analysis/SuperTranscripts/DTU/util/reformat_featureCounts.pl
/usr/lib/trinityrnaseq/Analysis/SuperTranscripts/extract_supertranscript_from_reference.py
/usr/lib/trinityrnaseq/Analysis/SuperTranscripts/_misc/aln_before_after.pl
/usr/lib/trinityrnaseq/Analysis/SuperTranscripts/pylib/Compact_graph_partial.py
/usr/lib/trinityrnaseq/Analysis/SuperTranscripts/pylib/Compact_graph_pruner.py
/usr/lib/trinityrnaseq/Analysis/SuperTranscripts/pylib/Compact_graph_whole.py
/usr/lib/trinityrnaseq/Analysis/SuperTranscripts/pylib/DP_matrix.py
/usr/lib/trinityrnaseq/Analysis/SuperTranscripts/pylib/Gene_splice_modeler.py
/usr/lib/trinityrnaseq/Analysis/SuperTranscripts/pylib/GraphCycleException.py
/usr/lib/trinityrnaseq/Analysis/SuperTranscripts/pylib/__init__.py
/usr/lib/trinityrnaseq/Analysis/SuperTranscripts/pylib/Node_alignment.py
/usr/lib/trinityrnaseq/Analysis/SuperTranscripts/pylib/Node_path.py
/usr/lib/trinityrnaseq/Analysis/SuperTranscripts/pylib/Splice_model_refiner.py
/usr/lib/trinityrnaseq/Analysis/SuperTranscripts/pylib/TGLOBALS.py
/usr/lib/trinityrnaseq/Analysis/SuperTranscripts/pylib/TGraph.py
/usr/lib/trinityrnaseq/Analysis/SuperTranscripts/pylib/TNode.py
/usr/lib/trinityrnaseq/Analysis/SuperTranscripts/pylib/Topological_sort.py
/usr/lib/trinityrnaseq/Analysis/SuperTranscripts/pylib/Trinity_fasta_parser.py
/usr/lib/trinityrnaseq/Analysis/SuperTranscripts/pylib/Trinity_util.py
/usr/lib/trinityrnaseq/Analysis/SuperTranscripts/README.md
/usr/lib/trinityrnaseq/Analysis/SuperTranscripts/Trinity_gene_splice_modeler.py
/usr/lib/trinityrnaseq/PerlLib/Ascii_genome_illustrator.pm
/usr/lib/trinityrnaseq/PerlLib/BED_utils.pm
/usr/lib/trinityrnaseq/PerlLib/BHStats.pm
/usr/lib/trinityrnaseq/PerlLib/CanvasXpress/Heatmap.pm
/usr/lib/trinityrnaseq/PerlLib/CDNA/Alignment_segment.pm
/usr/lib/trinityrnaseq/PerlLib/CDNA/Alternative_splice_comparer.pm
/usr/lib/trinityrnaseq/PerlLib/CDNA/CDNA_alignment.pm
/usr/lib/trinityrnaseq/PerlLib/CDNA/CDNA_stitcher.pm
/usr/lib/trinityrnaseq/PerlLib/CDNA/Gene_obj_alignment_assembler.pm
/usr/lib/trinityrnaseq/PerlLib/CDNA/Genome_based_cDNA_assembler.pm
/usr/lib/trinityrnaseq/PerlLib/CDNA/Genome_based_cDNA_graph_assembler.pm
/usr/lib/trinityrnaseq/PerlLib/CDNA/Overlap_assembler.pm
/usr/lib/trinityrnaseq/PerlLib/CDNA/PASA_alignment_assembler.pm
/usr/lib/trinityrnaseq/PerlLib/CDNA/Splice_graph_assembler.pm
/usr/lib/trinityrnaseq/PerlLib/CIGAR.pm
/usr/lib/trinityrnaseq/PerlLib/CMD_processor.pm
/usr/lib/trinityrnaseq/PerlLib/ColorGradient.pm
/usr/lib/trinityrnaseq/PerlLib/COMMON.pm
/usr/lib/trinityrnaseq/PerlLib/DelimParser.pm
/usr/lib/trinityrnaseq/PerlLib/EM.pm
/usr/lib/trinityrnaseq/PerlLib/Exons_to_geneobj.pm
/usr/lib/trinityrnaseq/PerlLib/Fasta_reader.pm
/usr/lib/trinityrnaseq/PerlLib/Fasta_retriever.pm
/usr/lib/trinityrnaseq/PerlLib/Fastq_reader.pm
/usr/lib/trinityrnaseq/PerlLib/Gene_obj_indexer.pm
/usr/lib/trinityrnaseq/PerlLib/Gene_obj.pm
/usr/lib/trinityrnaseq/PerlLib/GFF3_alignment_utils.pm
/usr/lib/trinityrnaseq/PerlLib/GFF3_utils.pm
/usr/lib/trinityrnaseq/PerlLib/GFF_maker.pm
/usr/lib/trinityrnaseq/PerlLib/GTF.pm
/usr/lib/trinityrnaseq/PerlLib/GTF_utils.pm
/usr/lib/trinityrnaseq/PerlLib/KmerGraphLib/AlignGraph.pm
/usr/lib/trinityrnaseq/PerlLib/KmerGraphLib/AlignNode.pm
/usr/lib/trinityrnaseq/PerlLib/KmerGraphLib/GenericGraph.pm
/usr/lib/trinityrnaseq/PerlLib/KmerGraphLib/GenericNode.pm
/usr/lib/trinityrnaseq/PerlLib/KmerGraphLib/KmerGraph.pm
/usr/lib/trinityrnaseq/PerlLib/KmerGraphLib/KmerNode.pm
/usr/lib/trinityrnaseq/PerlLib/KmerGraphLib/ReadCoverageGraph.pm
/usr/lib/trinityrnaseq/PerlLib/KmerGraphLib/ReadCoverageNode.pm
/usr/lib/trinityrnaseq/PerlLib/KmerGraphLib/ReadManager.pm
/usr/lib/trinityrnaseq/PerlLib/KmerGraphLib/ReadTracker.pm
/usr/lib/trinityrnaseq/PerlLib/KmerGraphLib/SAM_entry.pm
/usr/lib/trinityrnaseq/PerlLib/KmerGraphLib/SAM_reader.pm
/usr/lib/trinityrnaseq/PerlLib/KmerGraphLib/SAM_to_AlignGraph.pm
/usr/lib/trinityrnaseq/PerlLib/KmerGraphLib/StringGraph.pm
/usr/lib/trinityrnaseq/PerlLib/KmerGraphLib/StringNode.pm
/usr/lib/trinityrnaseq/PerlLib/Ktree.pm
/usr/lib/trinityrnaseq/PerlLib/Longest_orf.pm
/usr/lib/trinityrnaseq/PerlLib/Nuc_translator.pm
/usr/lib/trinityrnaseq/PerlLib/Overlap_info.pm
/usr/lib/trinityrnaseq/PerlLib/Overlap_piler.pm
/usr/lib/trinityrnaseq/PerlLib/overlapping_nucs.ph
/usr/lib/trinityrnaseq/PerlLib/Pipeliner.pm
/usr/lib/trinityrnaseq/PerlLib/Process_cmd.pm
/usr/lib/trinityrnaseq/PerlLib/PSL_parser.pm
/usr/lib/trinityrnaseq/PerlLib/SAM_entry.pm
/usr/lib/trinityrnaseq/PerlLib/SAM_reader.pm
/usr/lib/trinityrnaseq/PerlLib/Simulate/Uniform_Read_Generator.pm
/usr/lib/trinityrnaseq/PerlLib/SingleLinkageClusterer.pm
/usr/lib/trinityrnaseq/PerlLib/test_Fasta_retriever.pl
/usr/lib/trinityrnaseq/PerlLib/test_htc_gridrunner_LSF.pl
/usr/lib/trinityrnaseq/PerlLib/test_htc_gridrunner_SGE.pl
/usr/lib/trinityrnaseq/PerlLib/Thread_helper.pm
/usr/lib/trinityrnaseq/PerlLib/TiedHash.pm
/usr/lib/trinityrnaseq/PerlLib/VCF_parser.pm
/usr/lib/trinityrnaseq/PerlLib/WigParser.pm
/usr/lib/trinityrnaseq/PyLib/Pipeliner.py
/usr/lib/trinityrnaseq/Trinity
/usr/lib/trinityrnaseq/trinity-plugins/bamsifter/bamsifter
/usr/lib/trinityrnaseq/trinity-plugins/BIN/seqtk-trinity
/usr/lib/trinityrnaseq/trinity-plugins/COLLECTL/examine_resource_usage_profiling.pl
/usr/lib/trinityrnaseq/trinity-plugins/COLLECTL/util/collectl_dat_to_time_matrix.py
/usr/lib/trinityrnaseq/trinity-plugins/COLLECTL/util/plot_time_vs_resource.Rscript
/usr/lib/trinityrnaseq/trinity-plugins/DEXseq_util/dexseq_prepare_annotation.py
/usr/lib/trinityrnaseq/trinity-plugins/scaffold_iworm_contigs/scaffold_iworm_contigs
/usr/lib/trinityrnaseq/trinity-plugins/slclust/bin/slclust
/usr/lib/trinityrnaseq/util/abundance_estimates_to_matrix.pl
/usr/lib/trinityrnaseq/util/align_and_estimate_abundance.pl
/usr/lib/trinityrnaseq/util/analyze_blastPlus_topHit_coverage.pl
/usr/lib/trinityrnaseq/util/filter_low_expr_transcripts.pl
/usr/lib/trinityrnaseq/util/insilico_read_normalization.pl
/usr/lib/trinityrnaseq/util/misc/acc_list_to_fasta_entries.pl
/usr/lib/trinityrnaseq/util/misc/alexie_analyze_blast.pl
/usr/lib/trinityrnaseq/util/misc/align_reads_launch_igv.pl
/usr/lib/trinityrnaseq/util/misc/allele_simulator.pl
/usr/lib/trinityrnaseq/util/misc/alt_GG_read_partitioning_JCornish/genwig2.py
/usr/lib/trinityrnaseq/util/misc/alt_GG_read_partitioning_JCornish/genwig.sh
/usr/lib/trinityrnaseq/util/misc/altsplice_simulation_toolkit/sim_single_bubble.pl
/usr/lib/trinityrnaseq/util/misc/analyze_blastPlus_topHit_coverage.annotate_details_w_FL_info.pl
/usr/lib/trinityrnaseq/util/misc/analyze_blastPlus_topHit_coverage.by_prioritized_compreh_category.pl
/usr/lib/trinityrnaseq/util/misc/analyze_blastPlus_topHit_coverage.extract_OS.pl
/usr/lib/trinityrnaseq/util/misc/analyze_blastPlus_topHit_coverage.org_matrix.pl
/usr/lib/trinityrnaseq/util/misc/Artemis/join_multi_wig_to_graph_plot.pl
/usr/lib/trinityrnaseq/util/misc/average.pl
/usr/lib/trinityrnaseq/util/misc/bam_gene_tests/extract_bam_reads_per_target_gene.pl
/usr/lib/trinityrnaseq/util/misc/bam_gene_tests/extract_bam_reads_per_target_transcript.pl
/usr/lib/trinityrnaseq/util/misc/bam_gene_tests/harvest_transcripts.pl
/usr/lib/trinityrnaseq/util/misc/bam_gene_tests/write_trin_cmds.pl
/usr/lib/trinityrnaseq/util/misc/blastn_wrapper.pl
/usr/lib/trinityrnaseq/util/misc/blast_outfmt6_group_segments.pl
/usr/lib/trinityrnaseq/util/misc/blast_outfmt6_group_segments.to_Markov_Clustering.pl
/usr/lib/trinityrnaseq/util/misc/blast_outfmt6_group_segments.tophit_coverage.pl
/usr/lib/trinityrnaseq/util/misc/blat_util/blat_sam_add_reads2.pl
/usr/lib/trinityrnaseq/util/misc/blat_util/blat_top_hit_extractor.pl
/usr/lib/trinityrnaseq/util/misc/blat_util/blat_to_sam.pl
/usr/lib/trinityrnaseq/util/misc/blat_util/process_BLAT_alignments.pl
/usr/lib/trinityrnaseq/util/misc/blat_util/pslx_to_gff3.pl
/usr/lib/trinityrnaseq/util/misc/blat_util/run_BLAT_shortReads.pl
/usr/lib/trinityrnaseq/util/misc/blat_util/top_blat_sam_extractor.pl
/usr/lib/trinityrnaseq/util/misc/ButterflyFastaToGraphDot.pl
/usr/lib/trinityrnaseq/util/misc/capture_orig_n_unmapped_reads.pl
/usr/lib/trinityrnaseq/util/misc/cat_require_newlines.pl
/usr/lib/trinityrnaseq/util/misc/cdhit_examine_isoforms.pl
/usr/lib/trinityrnaseq/util/misc/cdna_fasta_file_to_transcript_gtf.pl

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Versiones, suites y repositorios

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Sumas de comprobación y fechas de observación

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

Completitud del registro

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Fuentes y procedencia

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 13 (Trixie) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Result: match verified
Debian 13 (Trixie) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Result: match verified