Debian 13 (Trixie) native package

python3-biom-format

Biological Observation Matrix (BIOM) format (Python 3)

Packages / Debian 13 (Trixie) / python / python3-biom-format

[Source: python-biom-format]

Package: python3-biom-format (2.1.16-1+b5)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [biom-format.org]

Similar packages:

[python-biom-format-doc]
documentation for BIOM format

Biological Observation Matrix (BIOM) format (Python 3)

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dep: [python3] (>= 3.13~)
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dep: [libc6] (>= 2.4)
GNU C Library: Shared libraries

sug: [python-biom-format-doc]
documentation for BIOM format

Download python3-biom-format

Architecture	Package Size	Installed Size	Files
amd64	148 KiB	894 KiB	[list of files]
arm64	139 KiB	960 KiB	[list of files]

Percorsi file del pacchetto (55)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/biom
/usr/lib/python3/dist-packages/biom/assets/exercise_api.py
/usr/lib/python3/dist-packages/biom/assets/exercise_cli.sh
/usr/lib/python3/dist-packages/biom/cli/__init__.py
/usr/lib/python3/dist-packages/biom/cli/installation_informer.py
/usr/lib/python3/dist-packages/biom/cli/metadata_adder.py
/usr/lib/python3/dist-packages/biom/cli/metadata_exporter.py
/usr/lib/python3/dist-packages/biom/cli/table_converter.py
/usr/lib/python3/dist-packages/biom/cli/table_head.py
/usr/lib/python3/dist-packages/biom/cli/table_ids.py
/usr/lib/python3/dist-packages/biom/cli/table_normalizer.py
/usr/lib/python3/dist-packages/biom/cli/table_subsetter.py
/usr/lib/python3/dist-packages/biom/cli/table_summarizer.py
/usr/lib/python3/dist-packages/biom/cli/table_validator.py
/usr/lib/python3/dist-packages/biom/cli/uc_processor.py
/usr/lib/python3/dist-packages/biom/cli/util.py
/usr/lib/python3/dist-packages/biom/err.py
/usr/lib/python3/dist-packages/biom/exception.py
/usr/lib/python3/dist-packages/biom/_filter.cpython-313-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/biom/_filter.cpython-313-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/biom_format-2.1.16.egg-info/dependency_links.txt
/usr/lib/python3/dist-packages/biom_format-2.1.16.egg-info/entry_points.txt
/usr/lib/python3/dist-packages/biom_format-2.1.16.egg-info/PKG-INFO
/usr/lib/python3/dist-packages/biom_format-2.1.16.egg-info/requires.txt
/usr/lib/python3/dist-packages/biom_format-2.1.16.egg-info/top_level.txt
/usr/lib/python3/dist-packages/biom/__init__.py
/usr/lib/python3/dist-packages/biom/parse.py
/usr/lib/python3/dist-packages/biom/_subsample.cpython-313-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/biom/_subsample.cpython-313-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/biom/table.py
/usr/lib/python3/dist-packages/biom/_transform.cpython-313-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/biom/_transform.cpython-313-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/biom/util.py
/usr/lib/python3/dist-packages/examples/min_sparse_otu_table.biom
/usr/lib/python3/dist-packages/examples/min_sparse_otu_table_hdf5.biom
/usr/lib/python3/dist-packages/examples/obs_md.txt
/usr/lib/python3/dist-packages/examples/rich_sparse_otu_table.biom
/usr/lib/python3/dist-packages/examples/rich_sparse_otu_table_hdf5.biom
/usr/lib/python3/dist-packages/examples/rich_sparse_otu_table_hdf5_group_metadata.biom
/usr/lib/python3/dist-packages/examples/sam_md.txt
/usr/share/doc/python3-biom-format/changelog.Debian.amd64.gz
/usr/share/doc/python3-biom-format/changelog.Debian.arm64.gz
/usr/share/doc/python3-biom-format/changelog.Debian.gz
/usr/share/doc/python3-biom-format/changelog.gz
/usr/share/doc/python3-biom-format/copyright
/usr/share/doc/python3-biom-format/examples/min_sparse_otu_table.biom
/usr/share/doc/python3-biom-format/examples/min_sparse_otu_table_hdf5.biom
/usr/share/doc/python3-biom-format/examples/obs_md.txt
/usr/share/doc/python3-biom-format/examples/rich_sparse_otu_table.biom
/usr/share/doc/python3-biom-format/examples/rich_sparse_otu_table_hdf5.biom
/usr/share/doc/python3-biom-format/examples/rich_sparse_otu_table_hdf5_group_metadata.biom
/usr/share/doc/python3-biom-format/examples/sam_md.txt
/usr/share/doc/python3-biom-format/README.test
/usr/share/doc/python3-biom-format/run-unit-test
/usr/share/man/man1/biom.1.gz

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

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Versioni, suite e repository

Ogni riga è metadato dell'indice pacchetti per una versione, architettura, suite e repository. Nomi, URL e dimensioni arrivano dalla fonte; un link è un punto di recupero mutabile, non una redistribuzione OpenFactory.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
2.1.16-1+b5	trixie / main	amd64	Debian 13 · main · amd64	148 KiB	894 KiB	pool/main/p/python-biom-format/python3-biom-format_2.1.16-1+b5_amd64.deb
2.1.16-1+b5	trixie / main	arm64	Debian 13 · main · arm64	139 KiB	960 KiB	pool/main/p/python-biom-format/python3-biom-format_2.1.16-1+b5_arm64.deb

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Checksum e date di osservazione

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

2.1.16-1+b5 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 3f0dc2869068b7e0331a156c17f6e9814b69f12c7b5e8af5b622fa17cff2d3eb

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '3f0dc2869068b7e0331a156c17f6e9814b69f12c7b5e8af5b622fa17cff2d3eb' 'python3-biom-format_2.1.16-1+b5_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

2.1.16-1+b5 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: c8bc8581b600f9e0cf3ed74aee5767485ba7606ebb6d5b01868e663d5d139b63

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' 'c8bc8581b600f9e0cf3ed74aee5767485ba7606ebb6d5b01868e663d5d139b63' 'python3-biom-format_2.1.16-1+b5_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Completezza del record

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Fonti e provenienza

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 13 (Trixie) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Result: match verified
Debian 13 (Trixie) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Result: match verified