Debian 13 (Trixie) native package

r-bioc-genomicranges

BioConductor representation and manipulation of genomic intervals

Packages / Debian 13 (Trixie) / gnu-r / r-bioc-genomicranges

Package: r-bioc-genomicranges (1.58.0+dfsg-2)

Maintainers:

Debian R Packages Maintainers

External Resources:

Homepage: [bioconductor.org]

BioConductor representation and manipulation of genomic intervals

Other Packages Related to r-bioc-genomicranges:

dep: r-api-4.0
Package not available
dep: r-api-bioc-3.20
Package not available
dep: [r-bioc-biocgenerics] (>= 0.37.0)
generic functions for Bioconductor
dep: [r-bioc-s4vectors] (>= 0.27.12)
BioConductor S4 implementation of vectors and lists
dep: [r-bioc-iranges] (>= 2.37.1)
GNU R low-level containers for storing sets of integer ranges
dep: [r-bioc-genomeinfodb] (>= 1.15.2)
BioConductor utilities for manipulating chromosome identifiers
dep: [r-bioc-xvector] (>= 0.29.2)
BioConductor representation and manpulation of external sequences
dep: [libc6] (>= 2.4)
GNU C Library: Shared libraries

sug: [r-cran-matrix]
GNU R package of classes for dense and sparse matrices
sug: [r-bioc-biobase]
base functions for Bioconductor
sug: [r-bioc-annotationdbi]
GNU R Annotation Database Interface for BioConductor
sug: [r-bioc-annotate]
BioConductor annotation for microarrays
sug: [r-bioc-biostrings] (>= 2.25.3)
GNU R string objects representing biological sequences
sug: [r-bioc-summarizedexperiment] (>= 0.1.5)
BioConductor assay container
sug: [r-bioc-rsamtools] (>= 1.13.53)
GNU R binary alignment (BAM), variant call (BCF), or tabix file import
sug: [r-bioc-genomicalignments]
BioConductor representation and manipulation of short genomic alignments
sug: [r-bioc-rtracklayer]
GNU R interface to genome browsers and their annotation tracks
sug: [r-bioc-bsgenome]
BioConductor infrastructure for Biostrings-based genome data packages
sug: [r-bioc-genomicfeatures]
GNU R tools for making and manipulating transcript centric annotations
sug: [r-bioc-txdbmaker]
Tools for making TxDb objects from genomic annotations
sug: [r-bioc-gviz]
Plotting data and annotation information along genomic coordinates
sug: [r-bioc-variantannotation]
BioConductor annotation of genetic variants
sug: [r-bioc-annotationhub]
GNU R client to access AnnotationHub resources
sug: [r-bioc-deseq2]
R package for RNA-Seq Differential Expression Analysis
sug: [r-bioc-dexseq]
GNU R inference of differential exon usage in RNA-Seq
sug: [r-bioc-edger]
Empirical analysis of digital gene expression data in R
sug: [r-bioc-keggrest]
GNU R client-side REST access to KEGG
sug: [r-cran-runit]
GNU R package providing unit testing framework
sug: [r-cran-digest]
GNU R package for 'hash digest' of R data structures
sug: [r-cran-knitr]
GNU R package for dynamic report generation using Literate Programming
sug: [r-cran-rmarkdown]
convert R markdown documents into a variety of formats
sug: [r-bioc-biocstyle]
standard styles for vignettes and other Bioconductor documents

Download r-bioc-genomicranges

Architecture	Package Size	Installed Size	Files
amd64	2.0 MiB	2.9 MiB	[list of files]
arm64	2.0 MiB	2.9 MiB	[list of files]

Percorsi file del pacchetto (55)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/lib/R/site-library/GenomicRanges/CITATION
/usr/lib/R/site-library/GenomicRanges/DESCRIPTION
/usr/lib/R/site-library/GenomicRanges/doc/ExtendingGenomicRanges.pdf
/usr/lib/R/site-library/GenomicRanges/doc/ExtendingGenomicRanges.R
/usr/lib/R/site-library/GenomicRanges/doc/ExtendingGenomicRanges.Rnw
/usr/lib/R/site-library/GenomicRanges/doc/GenomicRangesHOWTOs.pdf
/usr/lib/R/site-library/GenomicRanges/doc/GenomicRangesHOWTOs.R
/usr/lib/R/site-library/GenomicRanges/doc/GenomicRangesHOWTOs.Rnw
/usr/lib/R/site-library/GenomicRanges/doc/GenomicRangesIntroduction.R
/usr/lib/R/site-library/GenomicRanges/doc/GenomicRangesIntroduction.Rmd
/usr/lib/R/site-library/GenomicRanges/doc/GRanges_and_GRangesList_slides.pdf
/usr/lib/R/site-library/GenomicRanges/doc/GRanges_and_GRangesList_slides.R
/usr/lib/R/site-library/GenomicRanges/doc/GRanges_and_GRangesList_slides.Rnw
/usr/lib/R/site-library/GenomicRanges/doc/index.html
/usr/lib/R/site-library/GenomicRanges/doc/Ten_things_slides.pdf
/usr/lib/R/site-library/GenomicRanges/doc/Ten_things_slides.R
/usr/lib/R/site-library/GenomicRanges/doc/Ten_things_slides.Rnw
/usr/lib/R/site-library/GenomicRanges/extdata/feature_frags.txt
/usr/lib/R/site-library/GenomicRanges/help/aliases.rds
/usr/lib/R/site-library/GenomicRanges/help/AnIndex
/usr/lib/R/site-library/GenomicRanges/help/GenomicRanges.rdb
/usr/lib/R/site-library/GenomicRanges/help/GenomicRanges.rdx
/usr/lib/R/site-library/GenomicRanges/help/paths.rds
/usr/lib/R/site-library/GenomicRanges/html/00Index.html
/usr/lib/R/site-library/GenomicRanges/html/R.css
/usr/lib/R/site-library/GenomicRanges/INDEX
/usr/lib/R/site-library/GenomicRanges/libs/GenomicRanges.so
/usr/lib/R/site-library/GenomicRanges/Meta/features.rds
/usr/lib/R/site-library/GenomicRanges/Meta/hsearch.rds
/usr/lib/R/site-library/GenomicRanges/Meta/links.rds
/usr/lib/R/site-library/GenomicRanges/Meta/nsInfo.rds
/usr/lib/R/site-library/GenomicRanges/Meta/package.rds
/usr/lib/R/site-library/GenomicRanges/Meta/Rd.rds
/usr/lib/R/site-library/GenomicRanges/Meta/vignette.rds
/usr/lib/R/site-library/GenomicRanges/NAMESPACE
/usr/lib/R/site-library/GenomicRanges/NEWS
/usr/lib/R/site-library/GenomicRanges/R/GenomicRanges
/usr/lib/R/site-library/GenomicRanges/R/GenomicRanges.rdb
/usr/lib/R/site-library/GenomicRanges/R/GenomicRanges.rdx
/usr/lib/R/site-library/GenomicRanges/scripts/timing_overlaps.R
/usr/lib/R/site-library/GenomicRanges/unitTests/test_coverage-methods.R
/usr/lib/R/site-library/GenomicRanges/unitTests/test_findOverlaps-methods.R
/usr/lib/R/site-library/GenomicRanges/unitTests/test_GenomicRanges-comparison.R
/usr/lib/R/site-library/GenomicRanges/unitTests/test_GNCList-class.R
/usr/lib/R/site-library/GenomicRanges/unitTests/test_GRanges-class.R
/usr/lib/R/site-library/GenomicRanges/unitTests/test_GRangesList-class.R
/usr/lib/R/site-library/GenomicRanges/unitTests/test_inter-range-methods.R
/usr/lib/R/site-library/GenomicRanges/unitTests/test_intra-range-methods.R
/usr/lib/R/site-library/GenomicRanges/unitTests/test_makeGRangesFromDataFrame.R
/usr/lib/R/site-library/GenomicRanges/unitTests/test_makeGRangesListFromDataFrame.R
/usr/lib/R/site-library/GenomicRanges/unitTests/test_nearest-methods.R
/usr/lib/R/site-library/GenomicRanges/unitTests/test_precede_follow.R
/usr/lib/R/site-library/GenomicRanges/unitTests/test_setops-methods.R
/usr/share/doc/r-bioc-genomicranges/changelog.Debian.gz
/usr/share/doc/r-bioc-genomicranges/copyright

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

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Versioni, suite e repository

Ogni riga è metadato dell'indice pacchetti per una versione, architettura, suite e repository. Nomi, URL e dimensioni arrivano dalla fonte; un link è un punto di recupero mutabile, non una redistribuzione OpenFactory.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
1.58.0+dfsg-2	trixie / main	amd64	Debian 13 · main · amd64	2.0 MiB	2.9 MiB	pool/main/r/r-bioc-genomicranges/r-bioc-genomicranges_1.58.0+dfsg-2_amd64.deb
1.58.0+dfsg-2	trixie / main	arm64	Debian 13 · main · arm64	2.0 MiB	2.9 MiB	pool/main/r/r-bioc-genomicranges/r-bioc-genomicranges_1.58.0+dfsg-2_arm64.deb

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Checksum e date di osservazione

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

1.58.0+dfsg-2 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 575d765b1ce2aa15bd35c08cedf8cb79b9fecff2c10f2d7ab97f7e800fdaeb04

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '575d765b1ce2aa15bd35c08cedf8cb79b9fecff2c10f2d7ab97f7e800fdaeb04' 'r-bioc-genomicranges_1.58.0+dfsg-2_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

1.58.0+dfsg-2 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 658ba40bc220ae7dfff6bc8f27f7d33ca851249653b6431de7b6e8d56cb7e03e

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '658ba40bc220ae7dfff6bc8f27f7d33ca851249653b6431de7b6e8d56cb7e03e' 'r-bioc-genomicranges_1.58.0+dfsg-2_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Completezza del record

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Fonti e provenienza

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 13 (Trixie) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Result: match verified
Debian 13 (Trixie) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Result: match verified