Packages / Debian 13 (Trixie) / gnu-r / r-bioc-gviz
Package: r-bioc-gviz (1.50.0+dfsg-2)
Maintainers:
External Resources:
Homepage: [bioconductor.org]
Plotting data and annotation information along genomic coordinates
Other Packages Related to r-bioc-gviz:
dep: r-api-4.0
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dep: r-api-bioc-3.20
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dep: [r-bioc-s4vectors] (>= 0.9.25)
BioConductor S4 implementation of vectors and lists
dep: [r-bioc-iranges] (>= 1.99.18)
GNU R low-level containers for storing sets of integer ranges
dep: [r-bioc-genomicranges] (>= 1.17.20)
BioConductor representation and manipulation of genomic intervals
dep: [r-bioc-xvector] (>= 0.5.7)
BioConductor representation and manpulation of external sequences
dep: [r-bioc-rtracklayer] (>= 1.25.13)
GNU R interface to genome browsers and their annotation tracks
dep: [r-cran-lattice]
GNU R package for 'Trellis' graphics
dep: [r-cran-rcolorbrewer]
GNU R package providing suitable color palettes
dep: [r-bioc-biomart] (>= 2.11.0)
GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)
dep: [r-bioc-annotationdbi] (>= 1.27.5)
GNU R Annotation Database Interface for BioConductor
dep: [r-bioc-biobase] (>= 2.15.3)
base functions for Bioconductor
dep: [r-bioc-genomicfeatures] (>= 1.17.22)
GNU R tools for making and manipulating transcript centric annotations
dep: [r-bioc-ensembldb] (>= 2.11.3)
GNU R utilities to create and use an Ensembl based annotation database
dep: [r-bioc-bsgenome] (>= 1.33.1)
BioConductor infrastructure for Biostrings-based genome data packages
dep: [r-bioc-biostrings] (>= 2.33.11)
GNU R string objects representing biological sequences
dep: [r-bioc-biovizbase] (>= 1.13.8)
GNU R basic graphic utilities for visualization of genomic data
dep: [r-bioc-rsamtools] (>= 1.17.28)
GNU R binary alignment (BAM), variant call (BCF), or tabix file import
dep: [r-cran-latticeextra] (>= 0.6-26)
GNU R package of additional graphical displays based on lattice
dep: [r-cran-matrixstats] (>= 0.8.14)
GNU R methods that apply to rows and columns of a matrix
dep: [r-bioc-genomicalignments] (>= 1.1.16)
BioConductor representation and manipulation of short genomic alignments
dep: [r-bioc-genomeinfodb] (>= 1.1.3)
BioConductor utilities for manipulating chromosome identifiers
dep: [r-bioc-biocgenerics] (>= 0.11.3)
generic functions for Bioconductor
dep: [r-cran-digest] (>= 0.6.8)
GNU R package for 'hash digest' of R data structures
sug: [r-cran-xml2]
GNU R XML parser
sug: [r-bioc-biocstyle]
standard styles for vignettes and other Bioconductor documents
sug: [r-cran-knitr]
GNU R package for dynamic report generation using Literate Programming
sug: [r-cran-rmarkdown]
convert R markdown documents into a variety of formats
sug: [r-cran-testthat]
GNU R testsuite
Download r-bioc-gviz
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| all | 4.9 MiB | 6.8 MiB | [list of files] |
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Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3