Debian 13 (Trixie) native package

tvc

genetic variant caller for Ion Torrent sequencing platforms

Packages / Debian 13 (Trixie) / science / tvc

[Source: tvc]

Package: tvc (5.0.3+git20151221.80e144e+dfsg-5+b4)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [ioncommunity.thermofisher.com]

genetic variant caller for Ion Torrent sequencing platforms

Other Packages Related to tvc:

dep: [libarmadillo14] (>= 1:14.2.3+dfsg)
streamlined C++ linear algebra library
dep: [libbamtools2.5.2] (>= 2.5.2+dfsg)
dynamic library for manipulating BAM (genome alignment) files
dep: [libc6] (>= 2.38)
GNU C Library: Shared libraries
dep: [libdisorder0] (>= 0.0.2)
library for entropy measurement of byte streams
dep: [libgcc-s1] (>= 3.0)
GCC support library
dep: [libjsoncpp26] (>= 1.9.6)
library for reading and writing JSON for C++
dep: [libsmithwaterman0] (>= 0.0+git20160702.2610e25)
determine similar regions between two strings or genomic sequences (lib)
dep: [libstdc++6] (>= 13.1)
GNU Standard C++ Library v3
dep: [zlib1g] (>= 1:1.1.4)
compression library - runtime
dep: [python3]
interactive high-level object-oriented language (default python3 version)

Download tvc

Architecture	Package Size	Installed Size	Files
amd64	1.1 MiB	3.4 MiB	[list of files]
arm64	994 KiB	3.3 MiB	[list of files]

Percorsi file del pacchetto (30)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/tvc
/usr/bin/tvcassembly
/usr/bin/tvcutils
/usr/bin/variant_caller_pipeline.py
/usr/share/doc/tvc/changelog.Debian.amd64.gz
/usr/share/doc/tvc/changelog.Debian.arm64.gz
/usr/share/doc/tvc/changelog.Debian.gz
/usr/share/doc/tvc/copyright
/usr/share/doc/tvc/README.Debian
/usr/share/lintian/overrides/tvc
/usr/share/TVC/examples/example1/expected/small_variants.vcf
/usr/share/TVC/examples/example1/expected/TSVC_variants.vcf
/usr/share/TVC/examples/example1/reference.dict
/usr/share/TVC/examples/example1/reference.fasta
/usr/share/TVC/examples/example1/reference.fasta.fai
/usr/share/TVC/examples/example1/test.bam
/usr/share/TVC/examples/example1/test.bam.bai
/usr/share/TVC/examples/example1/test.bed
/usr/share/TVC/examples/example1/test_merged_plain.bed
/usr/share/TVC/examples/example1/test_original.bed
/usr/share/TVC/examples/example1/test_unmerged_detail.bed
/usr/share/TVC/pluginMedia/parameter_sets/ampliseqexome_germline_lowstringency_p1_parameters.json
/usr/share/TVC/pluginMedia/parameter_sets/ampliseqexome_somatic_lowstringency_p1_parameters.json
/usr/share/TVC/pluginMedia/parameter_sets/ampliseq_germline_lowstringency_pgm_parameters.json
/usr/share/TVC/pluginMedia/parameter_sets/ampliseq_somatic_lowstringency_pgm_parameters.json
/usr/share/TVC/pluginMedia/parameter_sets/ocp_somatic_lowstringency_pgm_parameters.json
/usr/share/TVC/pluginMedia/parameter_sets/pgx4_germline_lowstringency_pgm_parameters.json
/usr/share/TVC/pluginMedia/parameter_sets/targetseq_germline_lowstringency_p1_parameters.json
/usr/share/TVC/sse/ampliseqexome_germline_p1_hiq_motifset.txt
/usr/share/TVC/sse/motifset.txt

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Usa questo pacchetto

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Versioni, suite e repository

Ogni riga è metadato dell'indice pacchetti per una versione, architettura, suite e repository. Nomi, URL e dimensioni arrivano dalla fonte; un link è un punto di recupero mutabile, non una redistribuzione OpenFactory.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
5.0.3+git20151221.80e144e+dfsg-5+b4	trixie / main	arm64	Debian 13 · main · arm64	994 KiB	3.3 MiB	pool/main/t/tvc/tvc_5.0.3+git20151221.80e144e+dfsg-5+b4_arm64.deb
5.0.3+git20151221.80e144e+dfsg-5+b3	trixie / main	amd64	Debian 13 · main · amd64	1.1 MiB	3.4 MiB	pool/main/t/tvc/tvc_5.0.3+git20151221.80e144e+dfsg-5+b3_amd64.deb

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Checksum e date di osservazione

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

5.0.3+git20151221.80e144e+dfsg-5+b4 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 45ec74a382dab2da4d84c74e76ece4dec6b9d7827fd023652b8b85c500a850e1

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '45ec74a382dab2da4d84c74e76ece4dec6b9d7827fd023652b8b85c500a850e1' 'tvc_5.0.3+git20151221.80e144e+dfsg-5+b4_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

5.0.3+git20151221.80e144e+dfsg-5+b3 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: a74951635ebc9642334148e1c995648c17946aa0685795b47d2afc2426e65efc

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' 'a74951635ebc9642334148e1c995648c17946aa0685795b47d2afc2426e65efc' 'tvc_5.0.3+git20151221.80e144e+dfsg-5+b3_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Completezza del record

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Fonti e provenienza

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 13 (Trixie) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Result: match verified
Debian 13 (Trixie) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Result: match verified