Packages / Debian 12 (Bookworm) / science / ariba

Package: ariba (2.14.6+ds-5+b1)

Antibiotic Resistance Identification By Assembly

Other Packages Related to ariba:

dep: [fastaq]
FASTA and FASTQ file manipulation tools
dep: [python3] (<< 3.12)
interactive high-level object-oriented language (default python3 version)
dep: [python3] (>= 3.11~)
interactive high-level object-oriented language (default python3 version)
dep: [python3-biopython]
Python3 library for bioinformatics
dep: [python3-bs4]
error-tolerant HTML parser for Python 3
dep: [python3-dendropy]
DendroPy Phylogenetic Computing Library (Python 3)
dep: [python3-matplotlib]
Python based plotting system in a style similar to Matlab (Python 3)
dep: [python3-pymummer]
Python 3 interface to MUMmer
dep: [python3-pysam]
interface for the SAM/BAM sequence alignment and mapping format (Python 3)
dep: [python3] [any]
interactive high-level object-oriented language (default python3 version)
dep: [libc6] (>= 2.14)
GNU C Library: Shared libraries
dep: [libfml0] (>= 0.1)
library for assembling Illumina short reads in small regions
dep: [libgcc-s1] (>= 3.0)
GCC support library
dep: [libminimap0] (>= 0.2)
library for approximate mapping of long biosequences
dep: [libstdc++6] (>= 5.2)
GNU Standard C++ Library v3
dep: [zlib1g] (>= 1:1.1.4)
compression library - runtime
dep: [bowtie2]
ultrafast memory-efficient short read aligner
dep: [cd-hit]
suite of programs designed to quickly group sequences
dep: [mash]
fast genome and metagenome distance estimation using MinHash
dep: [mummer]
Efficient sequence alignment of full genomes
dep: [python3-tk]
Tkinter - Writing Tk applications with Python 3.x

sug: [spades]
genome assembler for single-cell and isolates data sets

Download ariba

Architecture	Package size	Installed size	Files	Package
amd64	1.9 MiB	20 MiB	list of files	Download
arm64	1.9 MiB	20 MiB	list of files	Download

Percorsi file del pacchetto (762)

Showing the first 250 sorted package-associated paths. Use file search to locate a specific path.

/usr/bin/ariba
/usr/lib/python3/dist-packages/ariba-2.14.6.egg-info/dependency_links.txt
/usr/lib/python3/dist-packages/ariba-2.14.6.egg-info/PKG-INFO
/usr/lib/python3/dist-packages/ariba-2.14.6.egg-info/requires.txt
/usr/lib/python3/dist-packages/ariba-2.14.6.egg-info/top_level.txt
/usr/lib/python3/dist-packages/ariba/aln_to_metadata.py
/usr/lib/python3/dist-packages/ariba/assembly_compare.py
/usr/lib/python3/dist-packages/ariba/assembly.py
/usr/lib/python3/dist-packages/ariba/assembly_variants.py
/usr/lib/python3/dist-packages/ariba/bam_parse.py
/usr/lib/python3/dist-packages/ariba/card_record.py
/usr/lib/python3/dist-packages/ariba/cdhit.py
/usr/lib/python3/dist-packages/ariba/cluster.py
/usr/lib/python3/dist-packages/ariba/clusters.py
/usr/lib/python3/dist-packages/ariba/common.py
/usr/lib/python3/dist-packages/ariba/external_progs.py
/usr/lib/python3/dist-packages/ariba/faidx.py
/usr/lib/python3/dist-packages/ariba/flag.py
/usr/lib/python3/dist-packages/ariba/histogram.py
/usr/lib/python3/dist-packages/ariba/__init__.py
/usr/lib/python3/dist-packages/ariba/link.py
/usr/lib/python3/dist-packages/ariba/mapping.py
/usr/lib/python3/dist-packages/ariba/megares_data_finder.py
/usr/lib/python3/dist-packages/ariba/megares_zip_parser.py
/usr/lib/python3/dist-packages/ariba/mic_plotter.py
/usr/lib/python3/dist-packages/ariba/mlst_profile.py
/usr/lib/python3/dist-packages/ariba/mlst_reporter.py
/usr/lib/python3/dist-packages/ariba/pubmlst_getter.py
/usr/lib/python3/dist-packages/ariba/pubmlst_ref_preparer.py
/usr/lib/python3/dist-packages/ariba/read_filter.py
/usr/lib/python3/dist-packages/ariba/read_store.py
/usr/lib/python3/dist-packages/ariba/refdata_query.py
/usr/lib/python3/dist-packages/ariba/reference_data.py
/usr/lib/python3/dist-packages/ariba/ref_genes_getter.py
/usr/lib/python3/dist-packages/ariba/ref_preparer.py
/usr/lib/python3/dist-packages/ariba/ref_seq_chooser.py
/usr/lib/python3/dist-packages/ariba/report_filter.py
/usr/lib/python3/dist-packages/ariba/report_flag_expander.py
/usr/lib/python3/dist-packages/ariba/report.py
/usr/lib/python3/dist-packages/ariba/samtools_variants.py
/usr/lib/python3/dist-packages/ariba/scaffold_graph.py
/usr/lib/python3/dist-packages/ariba/sequence_metadata.py
/usr/lib/python3/dist-packages/ariba/sequence_variant.py
/usr/lib/python3/dist-packages/ariba/summary_cluster.py
/usr/lib/python3/dist-packages/ariba/summary_cluster_variant.py
/usr/lib/python3/dist-packages/ariba/summary.py
/usr/lib/python3/dist-packages/ariba/summary_sample.py
/usr/lib/python3/dist-packages/ariba/tasks/aln2meta.py
/usr/lib/python3/dist-packages/ariba/tasks/expandflag.py
/usr/lib/python3/dist-packages/ariba/tasks/flag.py
/usr/lib/python3/dist-packages/ariba/tasks/getref.py
/usr/lib/python3/dist-packages/ariba/tasks/__init__.py
/usr/lib/python3/dist-packages/ariba/tasks/micplot.py
/usr/lib/python3/dist-packages/ariba/tasks/prepareref.py
/usr/lib/python3/dist-packages/ariba/tasks/prepareref_tb.py
/usr/lib/python3/dist-packages/ariba/tasks/pubmlstget.py
/usr/lib/python3/dist-packages/ariba/tasks/pubmlstspecies.py
/usr/lib/python3/dist-packages/ariba/tasks/refquery.py
/usr/lib/python3/dist-packages/ariba/tasks/reportfilter.py
/usr/lib/python3/dist-packages/ariba/tasks/run.py
/usr/lib/python3/dist-packages/ariba/tasks/summary.py
/usr/lib/python3/dist-packages/ariba/tasks/test.py
/usr/lib/python3/dist-packages/ariba/tasks/version.py
/usr/lib/python3/dist-packages/ariba/tb_data/NC_000962.3.fa.gz
/usr/lib/python3/dist-packages/ariba/tb_data/NC_000962.3.gb
/usr/lib/python3/dist-packages/ariba/tb_data/panel.20181115.json
/usr/lib/python3/dist-packages/ariba/tb_data/panel.20181115.txt
/usr/lib/python3/dist-packages/ariba/tb_data/panel.20181221.json
/usr/lib/python3/dist-packages/ariba/tb_data/panel.20181221.txt
/usr/lib/python3/dist-packages/ariba/tb_data/panel.20190102.json
/usr/lib/python3/dist-packages/ariba/tb_data/panel.20190102.txt
/usr/lib/python3/dist-packages/ariba/tb.py
/usr/lib/python3/dist-packages/ariba/test_run_data/metadata.tsv
/usr/lib/python3/dist-packages/ariba/test_run_data/reads_1.fq
/usr/lib/python3/dist-packages/ariba/test_run_data/reads_2.fq
/usr/lib/python3/dist-packages/ariba/test_run_data/ref_fasta_to_make_reads_from.fa
/usr/lib/python3/dist-packages/ariba/test_run_data/ref_seqs.fa
/usr/lib/python3/dist-packages/ariba/tests/aln_to_metadata_test.py
/usr/lib/python3/dist-packages/ariba/tests/assembly_compare_test.py
/usr/lib/python3/dist-packages/ariba/tests/assembly_test.py
/usr/lib/python3/dist-packages/ariba/tests/assembly_variants_test.py
/usr/lib/python3/dist-packages/ariba/tests/bam_parse_test.py
/usr/lib/python3/dist-packages/ariba/tests/card_record_test.py
/usr/lib/python3/dist-packages/ariba/tests/cdhit_test.py
/usr/lib/python3/dist-packages/ariba/tests/clusters_test.py
/usr/lib/python3/dist-packages/ariba/tests/cluster_test.py
/usr/lib/python3/dist-packages/ariba/tests/common_test.py
/usr/lib/python3/dist-packages/ariba/tests/data/aln_to_metadata_load_aln_file.in.fa
/usr/lib/python3/dist-packages/ariba/tests/data/aln_to_metadata_load_vars_file_bad.1.tsv
/usr/lib/python3/dist-packages/ariba/tests/data/aln_to_metadata_load_vars_file_bad.2.tsv
/usr/lib/python3/dist-packages/ariba/tests/data/aln_to_metadata_load_vars_file_good.tsv
/usr/lib/python3/dist-packages/ariba/tests/data/aln_to_metadata_make_cluster_file.out
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/usr/lib/python3/dist-packages/ariba/tests/data/aln_to_metadata_run_noncoding.out.tsv
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/usr/lib/python3/dist-packages/ariba/tests/data/assembly_assemble_with_fermilite_fails.reads_2.fq
/usr/lib/python3/dist-packages/ariba/tests/data/assembly_assemble_with_fermilite.reads_1.fq
/usr/lib/python3/dist-packages/ariba/tests/data/assembly_assemble_with_fermilite.reads_2.fq
/usr/lib/python3/dist-packages/ariba/tests/data/assembly_compare_parse_nucmer_coords_file.coords
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/usr/lib/python3/dist-packages/ariba/tests/data/assembly_run_fermilite.reads.fq
/usr/lib/python3/dist-packages/ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_1.fq
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/usr/lib/python3/dist-packages/ariba/tests/data/assembly_test_scaffold_with_sspace_contigs.fa
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/usr/lib/python3/dist-packages/ariba/tests/data/assembly_variants_one_var_one_ctg_cdg.fa
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/usr/lib/python3/dist-packages/ariba/tests/data/assembly_variants_test_get_mummer_variants.none.snps
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/usr/lib/python3/dist-packages/ariba/tests/data/bam_parse_test_parse.reads_1.fq
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/usr/lib/python3/dist-packages/ariba/tests/data/bam_parse_test_sam_to_soft_clipped.bam
/usr/lib/python3/dist-packages/ariba/tests/data/bam_parse_test_sam_to_soft_clipped.reads.fq
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/usr/lib/python3/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc.fa
/usr/lib/python3/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp.fa
/usr/lib/python3/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/reads_1.fq
/usr/lib/python3/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/reads_2.fq
/usr/lib/python3/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/references.fa
/usr/lib/python3/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp.tsv
/usr/lib/python3/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/reads_1.fq
/usr/lib/python3/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/reads_2.fq
/usr/lib/python3/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/references.fa
/usr/lib/python3/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc.tsv
/usr/lib/python3/dist-packages/ariba/tests/data/cluster_full_run_varonly.not_present.always_report.tsv
/usr/lib/python3/dist-packages/ariba/tests/data/clusters_cat_genes_match_ref.fa
/usr/lib/python3/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir/00.info.txt
/usr/lib/python3/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir/00.params.json
/usr/lib/python3/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir/01.filter.check_metadata.tsv
/usr/lib/python3/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir/02.cdhit.all.fa
/usr/lib/python3/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir/02.cdhit.clusters.pickle
/usr/lib/python3/dist-packages/ariba/tests/data/clusters_minimap_reads_to_all_refs.clstrs.tsv
/usr/lib/python3/dist-packages/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.clstr2rep
/usr/lib/python3/dist-packages/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.clstr_count
/usr/lib/python3/dist-packages/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.hist
/usr/lib/python3/dist-packages/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.pairs
/usr/lib/python3/dist-packages/ariba/tests/data/clusters_minimap_reads_to_all_refs.reads_1.fq
/usr/lib/python3/dist-packages/ariba/tests/data/clusters_minimap_reads_to_all_refs.reads_2.fq
/usr/lib/python3/dist-packages/ariba/tests/data/clusters_minimap_reads_to_all_refs.ref.fa
/usr/lib/python3/dist-packages/ariba/tests/data/clusters_run_with_tb.reads_1.fq.gz
/usr/lib/python3/dist-packages/ariba/tests/data/clusters_run_with_tb.reads_2.fq.gz
/usr/lib/python3/dist-packages/ariba/tests/data/clusters_run_with_tb.ref/00.info.txt
/usr/lib/python3/dist-packages/ariba/tests/data/clusters_run_with_tb.ref/00.params.json
/usr/lib/python3/dist-packages/ariba/tests/data/clusters_run_with_tb.ref/00.version_info.txt
/usr/lib/python3/dist-packages/ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_genes.log
/usr/lib/python3/dist-packages/ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_metadata.log

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Usa questo pacchetto

OpenFactory può avviare questo sistema operativo in una macchina virtuale del browser, o iniziare una costruzione che include il nome nativo del pacchetto di questo record.

Prova Debian 12 (Bookworm) nel browser Crea un'immagine che include ariba

Versioni, suite e repository

Ogni riga è metadato dell'indice pacchetti per una versione, architettura, suite e repository. Nomi, URL e dimensioni arrivano dalla fonte; un link è un punto di recupero mutabile, non una redistribuzione OpenFactory.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
2.14.6+ds-5+b1	bookworm / main	amd64	Debian 12 · main · amd64	1.9 MiB	20 MiB	pool/main/a/ariba/ariba_2.14.6+ds-5+b1_amd64.deb
2.14.6+ds-5+b1	bookworm / main	arm64	Debian 12 · main · arm64	1.9 MiB	20 MiB	pool/main/a/ariba/ariba_2.14.6+ds-5+b1_arm64.deb

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Checksum e date di osservazione

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

2.14.6+ds-5+b1 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 8088fc561585993547cc7b1c332ed34e72e75390d566486c1b9fc7e378a4beb6

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '8088fc561585993547cc7b1c332ed34e72e75390d566486c1b9fc7e378a4beb6' 'ariba_2.14.6+ds-5+b1_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

2.14.6+ds-5+b1 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 1a74eaf43d20a3ba32dd51eac2a99d659f4b860c834c399c80da722a9fae08c2

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '1a74eaf43d20a3ba32dd51eac2a99d659f4b860c834c399c80da722a9fae08c2' 'ariba_2.14.6+ds-5+b1_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00

Fonti e provenienza

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 12 (Bookworm) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Observed SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Result: match verified
Debian 12 (Bookworm) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Observed SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Result: match verified