Debian 13 (Trixie) native package

ariba

Antibiotic Resistance Identification By Assembly

Packages / Debian 13 (Trixie) / science / ariba

[Source: ariba]

Package: ariba (2.14.7+ds-7+b1)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [github.com]

Antibiotic Resistance Identification By Assembly

Other Packages Related to ariba:

dep: [fastaq]
FASTA and FASTQ file manipulation tools
dep: [python3] (<< 3.14)
interactive high-level object-oriented language (default python3 version)
dep: [python3] (>= 3.13~)
interactive high-level object-oriented language (default python3 version)
dep: [python3-biopython]
Python3 library for bioinformatics
dep: [python3-bs4] (>= 4.1.0)
error-tolerant HTML parser for Python 3
dep: [python3-dendropy]
DendroPy Phylogenetic Computing Library (Python 3)
dep: [python3-matplotlib]
Python based plotting system in a style similar to Matlab
dep: [python3-pymummer]
Python 3 interface to MUMmer
dep: [python3-pysam]
interface for the SAM/BAM sequence alignment and mapping format (Python 3)
dep: [python3] [any]
interactive high-level object-oriented language (default python3 version)
dep: [libc6] (>= 2.14)
GNU C Library: Shared libraries
dep: [libfml0] (>= 0.1)
library for assembling Illumina short reads in small regions
dep: [libgcc-s1] (>= 3.0)
GCC support library
dep: [libminimap0] (>= 0.2)
library for approximate mapping of long biosequences
dep: [libstdc++6] (>= 13.1)
GNU Standard C++ Library v3
dep: [zlib1g] (>= 1:1.1.4)
compression library - runtime
dep: [bowtie2]
ultrafast memory-efficient short read aligner
dep: [cd-hit]
suite of programs designed to quickly group sequences
dep: [mash]
fast genome and metagenome distance estimation using MinHash
dep: [mummer]
Efficient sequence alignment of full genomes
dep: [python3-pkg-resources]
Package Discovery and Resource Access using pkg_resources
dep: [python3-tk]
Tkinter - Writing Tk applications with Python 3.x

sug: [spades]
genome assembler for single-cell and isolates data sets

Download ariba

Architecture	Package Size	Installed Size	Files
amd64	1.9 MiB	20 MiB	[list of files]
arm64	1.9 MiB	20 MiB	[list of files]

Rutas de archivos del paquete (762)

Showing the first 250 sorted package-associated paths. Use file search to locate a specific path.

/usr/bin/ariba
/usr/lib/python3/dist-packages/ariba-2.14.6.egg-info/dependency_links.txt
/usr/lib/python3/dist-packages/ariba-2.14.6.egg-info/PKG-INFO
/usr/lib/python3/dist-packages/ariba-2.14.6.egg-info/requires.txt
/usr/lib/python3/dist-packages/ariba-2.14.6.egg-info/top_level.txt
/usr/lib/python3/dist-packages/ariba/aln_to_metadata.py
/usr/lib/python3/dist-packages/ariba/assembly_compare.py
/usr/lib/python3/dist-packages/ariba/assembly.py
/usr/lib/python3/dist-packages/ariba/assembly_variants.py
/usr/lib/python3/dist-packages/ariba/bam_parse.py
/usr/lib/python3/dist-packages/ariba/card_record.py
/usr/lib/python3/dist-packages/ariba/cdhit.py
/usr/lib/python3/dist-packages/ariba/cluster.py
/usr/lib/python3/dist-packages/ariba/clusters.py
/usr/lib/python3/dist-packages/ariba/common.py
/usr/lib/python3/dist-packages/ariba/external_progs.py
/usr/lib/python3/dist-packages/ariba/faidx.py
/usr/lib/python3/dist-packages/ariba/flag.py
/usr/lib/python3/dist-packages/ariba/histogram.py
/usr/lib/python3/dist-packages/ariba/__init__.py
/usr/lib/python3/dist-packages/ariba/link.py
/usr/lib/python3/dist-packages/ariba/mapping.py
/usr/lib/python3/dist-packages/ariba/megares_data_finder.py
/usr/lib/python3/dist-packages/ariba/megares_zip_parser.py
/usr/lib/python3/dist-packages/ariba/mic_plotter.py
/usr/lib/python3/dist-packages/ariba/mlst_profile.py
/usr/lib/python3/dist-packages/ariba/mlst_reporter.py
/usr/lib/python3/dist-packages/ariba/pubmlst_getter.py
/usr/lib/python3/dist-packages/ariba/pubmlst_ref_preparer.py
/usr/lib/python3/dist-packages/ariba/read_filter.py
/usr/lib/python3/dist-packages/ariba/read_store.py
/usr/lib/python3/dist-packages/ariba/refdata_query.py
/usr/lib/python3/dist-packages/ariba/reference_data.py
/usr/lib/python3/dist-packages/ariba/ref_genes_getter.py
/usr/lib/python3/dist-packages/ariba/ref_preparer.py
/usr/lib/python3/dist-packages/ariba/ref_seq_chooser.py
/usr/lib/python3/dist-packages/ariba/report_filter.py
/usr/lib/python3/dist-packages/ariba/report_flag_expander.py
/usr/lib/python3/dist-packages/ariba/report.py
/usr/lib/python3/dist-packages/ariba/samtools_variants.py
/usr/lib/python3/dist-packages/ariba/scaffold_graph.py
/usr/lib/python3/dist-packages/ariba/sequence_metadata.py
/usr/lib/python3/dist-packages/ariba/sequence_variant.py
/usr/lib/python3/dist-packages/ariba/summary_cluster.py
/usr/lib/python3/dist-packages/ariba/summary_cluster_variant.py
/usr/lib/python3/dist-packages/ariba/summary.py
/usr/lib/python3/dist-packages/ariba/summary_sample.py
/usr/lib/python3/dist-packages/ariba/tasks/aln2meta.py
/usr/lib/python3/dist-packages/ariba/tasks/expandflag.py
/usr/lib/python3/dist-packages/ariba/tasks/flag.py
/usr/lib/python3/dist-packages/ariba/tasks/getref.py
/usr/lib/python3/dist-packages/ariba/tasks/__init__.py
/usr/lib/python3/dist-packages/ariba/tasks/micplot.py
/usr/lib/python3/dist-packages/ariba/tasks/prepareref.py
/usr/lib/python3/dist-packages/ariba/tasks/prepareref_tb.py
/usr/lib/python3/dist-packages/ariba/tasks/pubmlstget.py
/usr/lib/python3/dist-packages/ariba/tasks/pubmlstspecies.py
/usr/lib/python3/dist-packages/ariba/tasks/refquery.py
/usr/lib/python3/dist-packages/ariba/tasks/reportfilter.py
/usr/lib/python3/dist-packages/ariba/tasks/run.py
/usr/lib/python3/dist-packages/ariba/tasks/summary.py
/usr/lib/python3/dist-packages/ariba/tasks/test.py
/usr/lib/python3/dist-packages/ariba/tasks/version.py
/usr/lib/python3/dist-packages/ariba/tb_data/NC_000962.3.fa.gz
/usr/lib/python3/dist-packages/ariba/tb_data/NC_000962.3.gb
/usr/lib/python3/dist-packages/ariba/tb_data/panel.20181115.json
/usr/lib/python3/dist-packages/ariba/tb_data/panel.20181115.txt
/usr/lib/python3/dist-packages/ariba/tb_data/panel.20181221.json
/usr/lib/python3/dist-packages/ariba/tb_data/panel.20181221.txt
/usr/lib/python3/dist-packages/ariba/tb_data/panel.20190102.json
/usr/lib/python3/dist-packages/ariba/tb_data/panel.20190102.txt
/usr/lib/python3/dist-packages/ariba/tb.py
/usr/lib/python3/dist-packages/ariba/test_run_data/metadata.tsv
/usr/lib/python3/dist-packages/ariba/test_run_data/reads_1.fq
/usr/lib/python3/dist-packages/ariba/test_run_data/reads_2.fq
/usr/lib/python3/dist-packages/ariba/test_run_data/ref_fasta_to_make_reads_from.fa
/usr/lib/python3/dist-packages/ariba/test_run_data/ref_seqs.fa
/usr/lib/python3/dist-packages/ariba/tests/aln_to_metadata_test.py
/usr/lib/python3/dist-packages/ariba/tests/assembly_compare_test.py
/usr/lib/python3/dist-packages/ariba/tests/assembly_test.py
/usr/lib/python3/dist-packages/ariba/tests/assembly_variants_test.py
/usr/lib/python3/dist-packages/ariba/tests/bam_parse_test.py
/usr/lib/python3/dist-packages/ariba/tests/card_record_test.py
/usr/lib/python3/dist-packages/ariba/tests/cdhit_test.py
/usr/lib/python3/dist-packages/ariba/tests/clusters_test.py
/usr/lib/python3/dist-packages/ariba/tests/cluster_test.py
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/usr/lib/python3/dist-packages/ariba/tests/data/aln_to_metadata_load_vars_file_good.tsv
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/usr/lib/python3/dist-packages/ariba/tests/data/assembly_assemble_with_fermilite.reads_2.fq
/usr/lib/python3/dist-packages/ariba/tests/data/assembly_compare_parse_nucmer_coords_file.coords
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/usr/lib/python3/dist-packages/ariba/tests/data/assembly_run_fermilite.reads.fq
/usr/lib/python3/dist-packages/ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_1.fq
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/usr/lib/python3/dist-packages/ariba/tests/data/assembly_test_scaffold_with_sspace_contigs.fa
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/usr/lib/python3/dist-packages/ariba/tests/data/assembly_variants_one_var_one_ctg_cdg.fa
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/usr/lib/python3/dist-packages/ariba/tests/data/assembly_variants_test_get_mummer_variants.none.snps
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/usr/lib/python3/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/references.fa
/usr/lib/python3/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene.tsv
/usr/lib/python3/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc.fa
/usr/lib/python3/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp.fa
/usr/lib/python3/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/reads_1.fq
/usr/lib/python3/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/reads_2.fq
/usr/lib/python3/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/references.fa
/usr/lib/python3/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp.tsv
/usr/lib/python3/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/reads_1.fq
/usr/lib/python3/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/reads_2.fq
/usr/lib/python3/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/references.fa
/usr/lib/python3/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc.tsv
/usr/lib/python3/dist-packages/ariba/tests/data/cluster_full_run_varonly.not_present.always_report.tsv
/usr/lib/python3/dist-packages/ariba/tests/data/clusters_cat_genes_match_ref.fa
/usr/lib/python3/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir/00.info.txt
/usr/lib/python3/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir/00.params.json
/usr/lib/python3/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir/01.filter.check_metadata.tsv
/usr/lib/python3/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir/02.cdhit.all.fa
/usr/lib/python3/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir/02.cdhit.clusters.pickle
/usr/lib/python3/dist-packages/ariba/tests/data/clusters_minimap_reads_to_all_refs.clstrs.tsv
/usr/lib/python3/dist-packages/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.clstr2rep
/usr/lib/python3/dist-packages/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.clstr_count
/usr/lib/python3/dist-packages/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.hist
/usr/lib/python3/dist-packages/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.pairs
/usr/lib/python3/dist-packages/ariba/tests/data/clusters_minimap_reads_to_all_refs.reads_1.fq
/usr/lib/python3/dist-packages/ariba/tests/data/clusters_minimap_reads_to_all_refs.reads_2.fq
/usr/lib/python3/dist-packages/ariba/tests/data/clusters_minimap_reads_to_all_refs.ref.fa
/usr/lib/python3/dist-packages/ariba/tests/data/clusters_run_with_tb.reads_1.fq.gz
/usr/lib/python3/dist-packages/ariba/tests/data/clusters_run_with_tb.reads_2.fq.gz
/usr/lib/python3/dist-packages/ariba/tests/data/clusters_run_with_tb.ref/00.info.txt
/usr/lib/python3/dist-packages/ariba/tests/data/clusters_run_with_tb.ref/00.params.json
/usr/lib/python3/dist-packages/ariba/tests/data/clusters_run_with_tb.ref/00.version_info.txt
/usr/lib/python3/dist-packages/ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_genes.log
/usr/lib/python3/dist-packages/ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_metadata.log

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Usar este paquete

OpenFactory puede arrancar este sistema operativo en una máquina virtual del navegador, o iniciar una construcción que incluye el nombre nativo del paquete de este registro.

Probar Debian 13 (Trixie) en el navegador Construir una imagen que incluye ariba

Versiones, suites y repositorios

Cada fila es metadato del índice de paquetes para una versión, arquitectura, suite y repositorio. Nombres, URL y tamaños vienen de la fuente; un enlace es un punto de descarga que puede cambiar, no una redistribución de OpenFactory.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
2.14.7+ds-7+b1	trixie / main	amd64	Debian 13 · main · amd64	1.9 MiB	20 MiB	pool/main/a/ariba/ariba_2.14.7+ds-7+b1_amd64.deb
2.14.7+ds-7+b1	trixie / main	arm64	Debian 13 · main · arm64	1.9 MiB	20 MiB	pool/main/a/ariba/ariba_2.14.7+ds-7+b1_arm64.deb

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Sumas de comprobación y fechas de observación

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

2.14.7+ds-7+b1 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 62ebed4b7a7a87096ad19c18ef32637ce1ae003a29841d801fce658d7398229f

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '62ebed4b7a7a87096ad19c18ef32637ce1ae003a29841d801fce658d7398229f' 'ariba_2.14.7+ds-7+b1_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

2.14.7+ds-7+b1 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 7f51c7044f6a13345e67dd4606b50f04f554a4bc4b1ea4efb17cff48794d789a

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '7f51c7044f6a13345e67dd4606b50f04f554a4bc4b1ea4efb17cff48794d789a' 'ariba_2.14.7+ds-7+b1_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Completitud del registro

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Fuentes y procedencia

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 13 (Trixie) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Result: match verified
Debian 13 (Trixie) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Result: match verified