Debian 12 (Bookworm) native package

atac

genome assembly-to-assembly comparison

Packages / Debian 12 (Bookworm) / science / atac

[Source: kmer]

Package: atac (0~20150903+r2013-8+b3)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [kmer.sourceforge.net]

Similar packages:

[kmer-examples]
sample data for kmer suite of tools for DNA sequence analysis
[leaff]
biological sequence library utilities and applications
[libkmer-dev]
suite of tools for DNA sequence analysis (development lib)
[libmeryl-dev]
in- and out-of-core kmer counting and utilities (development lib)
[meryl]
in- and out-of-core kmer counting and utilities
[sim4db]
batch spliced alignment of cDNA sequences to a target genome

genome assembly-to-assembly comparison

Other Packages Related to atac:

dep: [libc6] (>= 2.34)
GNU C Library: Shared libraries
dep: [libgcc-s1] (>= 3.0)
GCC support library
dep: [libstdc++6] (>= 5.2)
GNU Standard C++ Library v3
dep: [python3] (<< 3.12)
interactive high-level object-oriented language (default python3 version)
dep: [python3] (>= 3.11~)
interactive high-level object-oriented language (default python3 version)
dep: [python3.11]
Interactive high-level object-oriented language (version 3.11)
dep: [python3] [any]
interactive high-level object-oriented language (default python3 version)
dep: [perl] [any]
Larry Wall's Practical Extraction and Report Language
dep: [libfile-which-perl]
Perl module for searching paths for executable programs
dep: [leaff]
biological sequence library utilities and applications
dep: [meryl]
in- and out-of-core kmer counting and utilities
dep: [gnuplot]
Command-line driven interactive plotting program.

rec: [kmer-examples]
sample data for kmer suite of tools for DNA sequence analysis

Download atac

Architecture	Package Size	Installed Size	Files
amd64	369 KiB	2.6 MiB	[list of files]

Caminhos de arquivo do pacote (47)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/atac
/usr/lib/atac/bin/AtacDriver.py
/usr/lib/atac/bin/cleanAtac
/usr/lib/atac/bin/clumpMaker
/usr/lib/atac/bin/coalesceMatches
/usr/lib/atac/bin/correctGaps
/usr/lib/atac/bin/extractSequence
/usr/lib/atac/bin/extractUnmapped
/usr/lib/atac/bin/gapShifter
/usr/lib/atac/bin/happy-clones-span-clumps
/usr/lib/atac/bin/heavychains
/usr/lib/atac/bin/lengthFilter
/usr/lib/atac/bin/makeplot.pl
/usr/lib/atac/bin/matchExtender
/usr/lib/atac/bin/mismatchCounter
/usr/lib/atac/bin/overlap
/usr/lib/atac/bin/projectFeatures
/usr/lib/atac/bin/seatac
/usr/lib/atac/bin/statsGenerator
/usr/lib/atac/bin/testAtac
/usr/lib/atac/bin/uniqueFilter
/usr/lib/atac/lib/AtacDriver.py
/usr/lib/atac/lib/AtacFile.py
/usr/lib/atac/lib/dedashMatches.py
/usr/lib/atac/lib/DNA.py
/usr/lib/atac/lib/fillIntraRunGaps.py
/usr/lib/atac/lib/filter-heavychains.so
/usr/lib/atac/lib/filter-nop.so
/usr/lib/atac/lib/halign.so
/usr/lib/atac/lib/IdxStore.py
/usr/lib/atac/lib/localAlignerInterface.so
/usr/lib/atac/lib/MatchRecord.py
/usr/lib/atac/lib/mkstats.py
/usr/lib/atac/lib/MyFile.py
/usr/lib/atac/lib/PerfectRuns.py
/usr/lib/atac/lib/squeezeIntraRunGaps.py
/usr/lib/atac/lib/TrimMatchOverlaps.py
/usr/lib/atac/lib/UniqueFilter.py
/usr/share/doc/atac/atac-unit-test
/usr/share/doc/atac/changelog.Debian.amd64.gz
/usr/share/doc/atac/changelog.Debian.arm64.gz
/usr/share/doc/atac/changelog.Debian.gz
/usr/share/doc/atac/copyright
/usr/share/doc/atac/README.atac
/usr/share/doc/atac/README.test
/usr/share/man/man1/atac.1.gz
/usr/share/python3/runtime.d/atac.rtupdate

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Usar este pacote

O OpenFactory pode iniciar este sistema operacional em uma máquina virtual do navegador, ou começar uma construção que inclui o nome nativo do pacote deste registro.

Experimentar Debian 12 (Bookworm) no navegador Construir uma imagem que inclui atac

Versões, suites e repositórios

Cada linha é metadado do índice de pacotes para uma versão, arquitetura, suite e repositório. Nomes, URLs e tamanhos vêm da fonte; um link é um ponto de obtenção mutável, não uma redistribuição da OpenFactory.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
0~20150903+r2013-8+b3	bookworm / main	amd64	Debian 12 · main · amd64	369 KiB	2.6 MiB	pool/main/k/kmer/atac_0~20150903+r2013-8+b3_amd64.deb

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Checksums e datas de observação

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

0~20150903+r2013-8+b3 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 4604c0f9513b5732aab73c0dbee55f6dd6eeb85da91975adeaf288d8e5f370d6

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '4604c0f9513b5732aab73c0dbee55f6dd6eeb85da91975adeaf288d8e5f370d6' 'atac_0~20150903+r2013-8+b3_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Completude do registro

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5, Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Fontes e proveniência

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 12 (Bookworm) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Observed SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Result: match verified
Debian 12 (Bookworm) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Observed SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Result: match verified