Debian 12 (Bookworm) native package

biobambam2

tools for early stage alignment file processing

Packages / Debian 12 (Bookworm) / science / biobambam2

Package: biobambam2

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [gitlab.com]

tools for early stage alignment file processing

Nenhum registro publicado corresponde a este filtro de suite e arquitetura.

Caminhos de arquivo do pacote (141)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/bam12auxmerge
/usr/bin/bam12split
/usr/bin/bam12strip
/usr/bin/bamadapterclip
/usr/bin/bamadapterfind
/usr/bin/bamalignfrac
/usr/bin/bamauxmerge
/usr/bin/bamauxmerge2
/usr/bin/bamauxsort
/usr/bin/bamcat
/usr/bin/bamchecksort
/usr/bin/bamclipreinsert
/usr/bin/bamclipXT
/usr/bin/bamcollate2
/usr/bin/bamdepth
/usr/bin/bamdepthintersect
/usr/bin/bamdifference
/usr/bin/bamdownsamplerandom
/usr/bin/bamexplode
/usr/bin/bamexploderef
/usr/bin/bamfastcat
/usr/bin/bamfastexploderef
/usr/bin/bamfastnumextract
/usr/bin/bamfastsplit
/usr/bin/bamfeaturecount
/usr/bin/bamfillquery
/usr/bin/bamfilteraux
/usr/bin/bamfiltereofblocks
/usr/bin/bamfilterflags
/usr/bin/bamfilterheader
/usr/bin/bamfilterheader2
/usr/bin/bamfilterk
/usr/bin/bamfilterlength
/usr/bin/bamfiltermc
/usr/bin/bamfilternames
/usr/bin/bamfilterrefid
/usr/bin/bamfilterrg
/usr/bin/bamfixmateinformation
/usr/bin/bamfixpairinfo
/usr/bin/bamflagsplit
/usr/bin/bamindex
/usr/bin/bamintervalcomment
/usr/bin/bamintervalcommenthist
/usr/bin/bammapdist
/usr/bin/bammarkduplicates
/usr/bin/bammarkduplicates2
/usr/bin/bammarkduplicatesopt
/usr/bin/bammaskflags
/usr/bin/bammdnm
/usr/bin/bammerge
/usr/bin/bamnumericalindex
/usr/bin/bamnumericalindexstats
/usr/bin/bamrank
/usr/bin/bamranksort
/usr/bin/bamrecalculatecigar
/usr/bin/bamrecompress
/usr/bin/bamrefextract
/usr/bin/bamrefinterval
/usr/bin/bamreheader
/usr/bin/bamreplacechecksums
/usr/bin/bamreset
/usr/bin/bamscrapcount
/usr/bin/bamseqchksum
/usr/bin/bamsormadup
/usr/bin/bamsort
/usr/bin/bamsplit
/usr/bin/bamsplitdiv
/usr/bin/bamstreamingmarkduplicates
/usr/bin/bamtofastq
/usr/bin/bamvalidate
/usr/bin/bamzztoname
/usr/bin/fastaexplod
/usr/bin/fastqtobam
/usr/bin/fastqtobam2
/usr/bin/normalisefasta
/usr/bin/populaterefcache
/usr/share/doc/biobambam2/changelog.Debian.gz
/usr/share/doc/biobambam2/changelog.gz
/usr/share/doc/biobambam2/copyright
/usr/share/doc/biobambam2/examples/README.test-data
/usr/share/doc/biobambam2/examples/SRR11728627.bam
/usr/share/doc/biobambam2/examples/SRR11728641.bam
/usr/share/doc/biobambam2/README.gz
/usr/share/doc/biobambam2/README.md.gz
/usr/share/doc/biobambam2/README.test
/usr/share/doc/biobambam2/README.test-data
/usr/share/doc/biobambam2/run-unit-test
/usr/share/man/man1/bam12auxmerge.1.gz
/usr/share/man/man1/bam12split.1.gz
/usr/share/man/man1/bam12strip.1.gz
/usr/share/man/man1/bamadapterclip.1.gz
/usr/share/man/man1/bamadapterfind.1.gz
/usr/share/man/man1/bamalignfrac.1.gz
/usr/share/man/man1/bamauxmerge.1.gz
/usr/share/man/man1/bamauxmerge2.1.gz
/usr/share/man/man1/bamauxsort.1.gz
/usr/share/man/man1/bambisect.1.gz
/usr/share/man/man1/bamcat.1.gz
/usr/share/man/man1/bamchecksort.1.gz
/usr/share/man/man1/bamclipreinsert.1.gz
/usr/share/man/man1/bamclipXT.1.gz
/usr/share/man/man1/bamcollate2.1.gz
/usr/share/man/man1/bamconsensus.1.gz
/usr/share/man/man1/bamdownsamplerandom.1.gz
/usr/share/man/man1/bamfeaturecount.1.gz
/usr/share/man/man1/bamfillquery.1.gz
/usr/share/man/man1/bamfilteraux.1.gz
/usr/share/man/man1/bamfilterflags.1.gz
/usr/share/man/man1/bamfilterheader.1.gz
/usr/share/man/man1/bamfilterheader2.1.gz
/usr/share/man/man1/bamfiltermc.1.gz
/usr/share/man/man1/bamfilterrg.1.gz
/usr/share/man/man1/bamfixmateinformation.1.gz
/usr/share/man/man1/bamflagsplit.1.gz
/usr/share/man/man1/bamindex.1.gz
/usr/share/man/man1/bamintervalcomment.1.gz
/usr/share/man/man1/bammarkduplicates.1.gz
/usr/share/man/man1/bammarkduplicates2.1.gz
/usr/share/man/man1/bammarkduplicatesopt.1.gz
/usr/share/man/man1/bammaskflags.1.gz
/usr/share/man/man1/bammdnm.1.gz
/usr/share/man/man1/bammerge.1.gz
/usr/share/man/man1/bamrank.1.gz
/usr/share/man/man1/bamranksort.1.gz
/usr/share/man/man1/bamrecalculatecigar.1.gz
/usr/share/man/man1/bamrecompress.1.gz
/usr/share/man/man1/bamreset.1.gz
/usr/share/man/man1/bamseqchksum.1.gz
/usr/share/man/man1/bamsormadup.1.gz
/usr/share/man/man1/bamsort.1.gz
/usr/share/man/man1/bamsplit.1.gz
/usr/share/man/man1/bamsplitdiv.1.gz
/usr/share/man/man1/bamstreamingmarkduplicates.1.gz
/usr/share/man/man1/bamtagconversion.1.gz
/usr/share/man/man1/bamtofastq.1.gz
/usr/share/man/man1/bamvalidate.1.gz
/usr/share/man/man1/bamzztoname.1.gz
/usr/share/man/man1/fastaexplod.1.gz
/usr/share/man/man1/fastqtobam.1.gz
/usr/share/man/man1/filtergtf.1.gz
/usr/share/man/man1/normalisefasta.1.gz

Versões, suites e repositórios

Cada linha é metadado do índice de pacotes para uma versão, arquitetura, suite e repositório. Nomes, URLs e tamanhos vêm da fonte; um link é um ponto de obtenção mutável, não uma redistribuição da OpenFactory.

Nenhum registro publicado corresponde a este filtro de suite e arquitetura.

Checksums e datas de observação

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

Completude do registro

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5, Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Fontes e proveniência

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 12 (Bookworm) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Observed SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Result: match verified
Debian 12 (Bookworm) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Observed SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Result: match verified