Debian 12 (Bookworm) native package

circlator

circularize genome assemblies

Packages / Debian 12 (Bookworm) / science / circlator

Package: circlator (1.5.6-7)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [sanger-pathogens.github.io]

circularize genome assemblies

Other Packages Related to circlator:

dep: [fastaq]
FASTA and FASTQ file manipulation tools
dep: [python3-openpyxl]
Python 3 module to read/write OpenXML xlsx/xlsm files
dep: [python3-pymummer]
Python 3 interface to MUMmer
dep: [python3-pysam]
interface for the SAM/BAM sequence alignment and mapping format (Python 3)
dep: [python3] [any]
interactive high-level object-oriented language (default python3 version)
dep: [prodigal]
Microbial (bacterial and archaeal) gene finding program
dep: [bwa]
Burrows-Wheeler Aligner
dep: [mummer]
Efficient sequence alignment of full genomes
dep: [samtools]
processing sequence alignments in SAM, BAM and CRAM formats
dep: [spades]
genome assembler for single-cell and isolates data sets
dep: [canu]
single molecule sequence assembler for genomes

Download circlator

Architecture	Package Size	Installed Size	Files
amd64	4.3 MiB	10 MiB	[list of files]

Package file paths (58)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/circlator
/usr/lib/python3/dist-packages/circlator-1.5.5.egg-info/dependency_links.txt
/usr/lib/python3/dist-packages/circlator-1.5.5.egg-info/PKG-INFO
/usr/lib/python3/dist-packages/circlator-1.5.5.egg-info/requires.txt
/usr/lib/python3/dist-packages/circlator-1.5.5.egg-info/top_level.txt
/usr/lib/python3/dist-packages/circlator/assemble.py
/usr/lib/python3/dist-packages/circlator/assembly.py
/usr/lib/python3/dist-packages/circlator/bamfilter.py
/usr/lib/python3/dist-packages/circlator/clean.py
/usr/lib/python3/dist-packages/circlator/common.py
/usr/lib/python3/dist-packages/circlator/data/dnaA.fasta
/usr/lib/python3/dist-packages/circlator/data/test_contigs.fa
/usr/lib/python3/dist-packages/circlator/data/test_for_reads.fa
/usr/lib/python3/dist-packages/circlator/data/test_make_data.sh
/usr/lib/python3/dist-packages/circlator/data/test_reads.fq.gz
/usr/lib/python3/dist-packages/circlator/data/test_ref.fa
/usr/lib/python3/dist-packages/circlator/data/test_ref.fa.fai
/usr/lib/python3/dist-packages/circlator/dnaa.py
/usr/lib/python3/dist-packages/circlator/external_progs.py
/usr/lib/python3/dist-packages/circlator/__init__.py
/usr/lib/python3/dist-packages/circlator/mapping.py
/usr/lib/python3/dist-packages/circlator/merge.py
/usr/lib/python3/dist-packages/circlator/minimus2.py
/usr/lib/python3/dist-packages/circlator/program.py
/usr/lib/python3/dist-packages/circlator/start_fixer.py
/usr/lib/python3/dist-packages/circlator/tasks/all.py
/usr/lib/python3/dist-packages/circlator/tasks/assemble.py
/usr/lib/python3/dist-packages/circlator/tasks/bam2reads.py
/usr/lib/python3/dist-packages/circlator/tasks/clean.py
/usr/lib/python3/dist-packages/circlator/tasks/fixstart.py
/usr/lib/python3/dist-packages/circlator/tasks/get_dnaa.py
/usr/lib/python3/dist-packages/circlator/tasks/__init__.py
/usr/lib/python3/dist-packages/circlator/tasks/mapreads.py
/usr/lib/python3/dist-packages/circlator/tasks/merge.py
/usr/lib/python3/dist-packages/circlator/tasks/minimus2.py
/usr/lib/python3/dist-packages/circlator/tasks/progcheck.py
/usr/lib/python3/dist-packages/circlator/tasks/test.py
/usr/lib/python3/dist-packages/circlator/tasks/version.py
/usr/lib/python3/dist-packages/circlator/versions.py
/usr/share/doc/circlator/changelog.Debian.gz
/usr/share/doc/circlator/changelog.gz
/usr/share/doc/circlator/copyright
/usr/share/doc/circlator/examples/assemble_test.py
/usr/share/doc/circlator/examples/assembly_test.py
/usr/share/doc/circlator/examples/bamfilter_test.py
/usr/share/doc/circlator/examples/clean_test.py
/usr/share/doc/circlator/examples/common_test.py
/usr/share/doc/circlator/examples/data.tar.xz
/usr/share/doc/circlator/examples/dnaa_test.py
/usr/share/doc/circlator/examples/external_progs_test.py
/usr/share/doc/circlator/examples/mapping_test.py
/usr/share/doc/circlator/examples/merge_test.py
/usr/share/doc/circlator/examples/minimus2_test.py
/usr/share/doc/circlator/examples/start_fixer_test.py
/usr/share/doc/circlator/README.md.gz
/usr/share/doc/circlator/README.test
/usr/share/doc/circlator/run-unit-test
/usr/share/man/man1/circlator.1.gz

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

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OpenFactory can boot this operating system in a browser VM, or start a build that includes the native package name from this record.

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Versions, suites, and repositories

Each row is recorded package-index metadata for one version, architecture, suite, and repository. Names, URLs, and sizes are source-reported; a link is a potentially mutable retrieval location, not an OpenFactory redistribution claim or proof that OpenFactory retained the artifact bytes.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
1.5.6-7	bookworm / main	amd64	Debian 12 · main · amd64	4.3 MiB	10 MiB	pool/main/c/circlator/circlator_1.5.6-7_amd64.deb

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Checksums and observation dates

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

1.5.6-7 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 18b83759e3900e6b677bbf7b3ec7eb85ada7a7268bcc55fd7ef453a3b1274caa

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '18b83759e3900e6b677bbf7b3ec7eb85ada7a7268bcc55fd7ef453a3b1274caa' 'circlator_1.5.6-7_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Catalog record completeness

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Sources and provenance

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 12 (Bookworm) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Observed SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Result: match verified