Debian 12 (Bookworm) native package

genometools

versatile genome analysis toolkit

Packages / Debian 12 (Bookworm) / science / genometools

Package: genometools (1.6.2+ds-3)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [genometools.org]

versatile genome analysis toolkit

Other Packages Related to genometools:

dep: [libbz2-1.0]
high-quality block-sorting file compressor library - runtime
dep: [libc6] (>= 2.34)
GNU C Library: Shared libraries
dep: [libcairo2] (>= 1.2.4)
Cairo 2D vector graphics library
dep: [libexpat1] (>= 2.0.1)
XML parsing C library - runtime library
dep: [libglib2.0-0] (>= 2.12.0)
GLib library of C routines
dep: [liblua5.1-0]
Shared library for the Lua interpreter version 5.1
dep: [libpango-1.0-0] (>= 1.14.0)
Layout and rendering of internationalized text
dep: [libpangocairo-1.0-0] (>= 1.14.0)
Layout and rendering of internationalized text
dep: [libsqlite3-0] (>= 3.5.9)
SQLite 3 shared library
dep: [libtre5]
regexp matching library with approximate matching
dep: [lua-filesystem] (>= 1.8.0)
luafilesystem library for the Lua language
dep: [lua-lpeg] (>= 1.0.2)
LPeg library for the Lua language
dep: [lua-md5]
MD5 library for the Lua language
dep: [zlib1g] (>= 1:1.2.3.3)
compression library - runtime
dep: [genometools-common]
shared data files for GenomeTools

Download genometools

Architecture	Package Size	Installed Size	Files
arm64	1.3 MiB	4.0 MiB	[list of files]

Package file paths (101)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/gt
/usr/share/doc/genometools/changelog.Debian.gz
/usr/share/doc/genometools/changelog.gz
/usr/share/doc/genometools/CONTRIBUTORS
/usr/share/doc/genometools/copyright
/usr/share/doc/genometools/README
/usr/share/doc/genometools/VERSION
/usr/share/man/man1/gt.1.gz
/usr/share/man/man1/gt-bed_to_gff3.1.gz
/usr/share/man/man1/gt-cds.1.gz
/usr/share/man/man1/gt-chain2dim.1.gz
/usr/share/man/man1/gt-chseqids.1.gz
/usr/share/man/man1/gt-clean.1.gz
/usr/share/man/man1/gt-compreads.1.gz
/usr/share/man/man1/gt-compreads-compress.1.gz
/usr/share/man/man1/gt-compreads-decompress.1.gz
/usr/share/man/man1/gt-compreads-refcompress.1.gz
/usr/share/man/man1/gt-compreads-refdecompress.1.gz
/usr/share/man/man1/gt-condenseq.1.gz
/usr/share/man/man1/gt-congruence.1.gz
/usr/share/man/man1/gt-congruence-spacedseed.1.gz
/usr/share/man/man1/gt-convertseq.1.gz
/usr/share/man/man1/gt-csa.1.gz
/usr/share/man/man1/gt-dot.1.gz
/usr/share/man/man1/gt-dupfeat.1.gz
/usr/share/man/man1/gt-encseq.1.gz
/usr/share/man/man1/gt-encseq2spm.1.gz
/usr/share/man/man1/gt-encseq-bench.1.gz
/usr/share/man/man1/gt-encseq-bitextract.1.gz
/usr/share/man/man1/gt-encseq-check.1.gz
/usr/share/man/man1/gt-encseq-decode.1.gz
/usr/share/man/man1/gt-encseq-encode.1.gz
/usr/share/man/man1/gt-encseq-info.1.gz
/usr/share/man/man1/gt-encseq-md5.1.gz
/usr/share/man/man1/gt-encseq-sample.1.gz
/usr/share/man/man1/gt-eval.1.gz
/usr/share/man/man1/gt-extractfeat.1.gz
/usr/share/man/man1/gt-extractseq.1.gz
/usr/share/man/man1/gt-fastq_sample.1.gz
/usr/share/man/man1/gt-featureindex.1.gz
/usr/share/man/man1/gt-fingerprint.1.gz
/usr/share/man/man1/gt-genomediff.1.gz
/usr/share/man/man1/gt-gff3.1.gz
/usr/share/man/man1/gt-gff3_to_gtf.1.gz
/usr/share/man/man1/gt-gff3validator.1.gz
/usr/share/man/man1/gt-gtf_to_gff3.1.gz
/usr/share/man/man1/gt-hop.1.gz
/usr/share/man/man1/gt-id_to_md5.1.gz
/usr/share/man/man1/gt-inlineseq_add.1.gz
/usr/share/man/man1/gt-inlineseq_split.1.gz
/usr/share/man/man1/gt-interfeat.1.gz
/usr/share/man/man1/gt-loccheck.1.gz
/usr/share/man/man1/gt-ltrclustering.1.gz
/usr/share/man/man1/gt-ltrdigest.1.gz
/usr/share/man/man1/gt-ltrharvest.1.gz
/usr/share/man/man1/gt-matchtool.1.gz
/usr/share/man/man1/gt-matstat.1.gz
/usr/share/man/man1/gt-md5_to_id.1.gz
/usr/share/man/man1/gt-merge.1.gz
/usr/share/man/man1/gt-mergefeat.1.gz
/usr/share/man/man1/gt-mkfeatureindex.1.gz
/usr/share/man/man1/gt-mmapandread.1.gz
/usr/share/man/man1/gt-orffinder.1.gz
/usr/share/man/man1/gt-packedindex.1.gz
/usr/share/man/man1/gt-prebwt.1.gz
/usr/share/man/man1/gt-readjoiner.1.gz
/usr/share/man/man1/gt-readjoiner-assembly.1.gz
/usr/share/man/man1/gt-readjoiner-overlap.1.gz
/usr/share/man/man1/gt-readjoiner-prefilter.1.gz
/usr/share/man/man1/gt-repfind.1.gz
/usr/share/man/man1/gt-scriptfilter.1.gz
/usr/share/man/man1/gt-seed_extend.1.gz
/usr/share/man/man1/gt-select.1.gz
/usr/share/man/man1/gt-seq.1.gz
/usr/share/man/man1/gt-seqfilter.1.gz
/usr/share/man/man1/gt-seqids.1.gz
/usr/share/man/man1/gt-seqmutate.1.gz
/usr/share/man/man1/gt-seqorder.1.gz
/usr/share/man/man1/gt-seqstat.1.gz
/usr/share/man/man1/gt-seqtransform.1.gz
/usr/share/man/man1/gt-seqtranslate.1.gz
/usr/share/man/man1/gt-sequniq.1.gz
/usr/share/man/man1/gt-shredder.1.gz
/usr/share/man/man1/gt-shulengthdist.1.gz
/usr/share/man/man1/gt-simreads.1.gz
/usr/share/man/man1/gt-sketch.1.gz
/usr/share/man/man1/gt-sketch_page.1.gz
/usr/share/man/man1/gt-snpper.1.gz
/usr/share/man/man1/gt-speck.1.gz
/usr/share/man/man1/gt-splicesiteinfo.1.gz
/usr/share/man/man1/gt-splitfasta.1.gz
/usr/share/man/man1/gt-stat.1.gz
/usr/share/man/man1/gt-tagerator.1.gz
/usr/share/man/man1/gt-tallymer.1.gz
/usr/share/man/man1/gt-tallymer-mkindex.1.gz
/usr/share/man/man1/gt-tallymer-occratio.1.gz
/usr/share/man/man1/gt-tallymer-search.1.gz
/usr/share/man/man1/gt-tirvish.1.gz
/usr/share/man/man1/gt-uniq.1.gz
/usr/share/man/man1/gt-uniquesub.1.gz
/usr/share/man/man1/gt-wtree.1.gz

Field source: Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00

Use this package

OpenFactory can boot this operating system in a browser VM, or start a build that includes the native package name from this record.

Try Debian 12 (Bookworm) in the browser Build an image that includes genometools

Versions, suites, and repositories

Each row is recorded package-index metadata for one version, architecture, suite, and repository. Names, URLs, and sizes are source-reported; a link is a potentially mutable retrieval location, not an OpenFactory redistribution claim or proof that OpenFactory retained the artifact bytes.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
1.6.2+ds-3	bookworm / main	arm64	Debian 12 · main · arm64	1.3 MiB	4.0 MiB	pool/main/g/genometools/genometools_1.6.2+ds-3_arm64.deb
1.6.5+ds-2~bpo12+1	bookworm-backports / main	arm64	Debian 12 backports · main · arm64	1.3 MiB	4.0 MiB	pool/main/g/genometools/genometools_1.6.5+ds-2~bpo12+1_arm64.deb

Field source: Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00

Checksums and observation dates

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

1.6.2+ds-3 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: f44902aa1b1209892a81bfba5683f626a9e7ae5fcc5832d2d376396abf5200f7

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' 'f44902aa1b1209892a81bfba5683f626a9e7ae5fcc5832d2d376396abf5200f7' 'genometools_1.6.2+ds-3_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00

1.6.5+ds-2~bpo12+1 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: f2c0c34c0d5428f85762e05507740cbd666ff42ea8a29f97355294ec21912c2e

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' 'f2c0c34c0d5428f85762e05507740cbd666ff42ea8a29f97355294ec21912c2e' 'genometools_1.6.5+ds-2~bpo12+1_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) backports main arm64 revision bookworm-backports-main-arm64:9a9a82396b83567fd3c9e3df7d9190b5685c1bf07ef2ad14e04ad353b0caf4d5

Catalog record completeness

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 12 (Bookworm) backports main amd64 revision bookworm-backports-main-amd64:b863aa021bef70ee6ca393bbb9267d954281b77fd02a1d485c8259303ffdc0e6, Debian 12 (Bookworm) backports main arm64 revision bookworm-backports-main-arm64:9a9a82396b83567fd3c9e3df7d9190b5685c1bf07ef2ad14e04ad353b0caf4d5, Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5, Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Sources and provenance

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 12 (Bookworm) backports main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-backports-main-amd64:b863aa021bef70ee6ca393bbb9267d954281b77fd02a1d485c8259303ffdc0e6
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm-backports/InRelease
Signed-object SHA-256
43c0dc1b38775aa77216f1aca0b9e47abde4ef3b6f223fd965a6464f45da709d
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: b863aa021bef70ee6ca393bbb9267d954281b77fd02a1d485c8259303ffdc0e6
Observed SHA-256: b863aa021bef70ee6ca393bbb9267d954281b77fd02a1d485c8259303ffdc0e6
Result: match verified
Debian 12 (Bookworm) backports main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-backports-main-arm64:9a9a82396b83567fd3c9e3df7d9190b5685c1bf07ef2ad14e04ad353b0caf4d5
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm-backports/InRelease
Signed-object SHA-256
43c0dc1b38775aa77216f1aca0b9e47abde4ef3b6f223fd965a6464f45da709d
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 9a9a82396b83567fd3c9e3df7d9190b5685c1bf07ef2ad14e04ad353b0caf4d5
Observed SHA-256: 9a9a82396b83567fd3c9e3df7d9190b5685c1bf07ef2ad14e04ad353b0caf4d5
Result: match verified
Debian 12 (Bookworm) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Observed SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Result: match verified
Debian 12 (Bookworm) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Observed SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Result: match verified