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Debian 12 (Bookworm) native package

khmer

in-memory DNA sequence kmer counting, filtering & graph traversal

Packages / Debian 12 (Bookworm) / science / khmer

[Source: khmer]

Package: khmer

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [khmer.readthedocs.org]

Similar packages:

  • [khmer-common]

    common files for the khmer project tools

  • [liboxli1]

    in-memory DNA sequence analysis library from the khmer project

  • [liboxli-dev]

    in-memory DNA sequence analysis dev library

in-memory DNA sequence kmer counting, filtering & graph traversal

Ningún registro publicado coincide con este filtro de suite y arquitectura.

Rutas de archivos del paquete (262)

Showing the first 250 sorted package-associated paths. Use file search to locate a specific path.

  • /usr/bin/khmer
  • /usr/lib/khmer/bin/abundance-dist.py
  • /usr/lib/khmer/bin/abundance-dist-single.py
  • /usr/lib/khmer/bin/annotate-partitions.py
  • /usr/lib/khmer/bin/count-median.py
  • /usr/lib/khmer/bin/do-partition.py
  • /usr/lib/khmer/bin/extract-long-sequences.py
  • /usr/lib/khmer/bin/extract-paired-reads.py
  • /usr/lib/khmer/bin/extract-partitions.py
  • /usr/lib/khmer/bin/fastq-to-fasta.py
  • /usr/lib/khmer/bin/filter-abund.py
  • /usr/lib/khmer/bin/filter-abund-single.py
  • /usr/lib/khmer/bin/filter-stoptags.py
  • /usr/lib/khmer/bin/find-knots.py
  • /usr/lib/khmer/bin/interleave-reads.py
  • /usr/lib/khmer/bin/load-graph.py
  • /usr/lib/khmer/bin/load-into-counting.py
  • /usr/lib/khmer/bin/make-initial-stoptags.py
  • /usr/lib/khmer/bin/merge-partitions.py
  • /usr/lib/khmer/bin/normalize-by-median.py
  • /usr/lib/khmer/bin/partition-graph.py
  • /usr/lib/khmer/bin/readstats.py
  • /usr/lib/khmer/bin/sample-reads-randomly.py
  • /usr/lib/khmer/bin/split-paired-reads.py
  • /usr/lib/khmer/bin/trim-low-abund.py
  • /usr/lib/khmer/bin/unique-kmers.py
  • /usr/lib/python3/dist-packages/khmer-3.0.0a3.egg-info/dependency_links.txt
  • /usr/lib/python3/dist-packages/khmer-3.0.0a3.egg-info/not-zip-safe
  • /usr/lib/python3/dist-packages/khmer-3.0.0a3.egg-info/PKG-INFO
  • /usr/lib/python3/dist-packages/khmer-3.0.0a3.egg-info/requires.txt
  • /usr/lib/python3/dist-packages/khmer-3.0.0a3.egg-info/top_level.txt
  • /usr/lib/python3/dist-packages/khmer/__init__.py
  • /usr/lib/python3/dist-packages/khmer/kfile.py
  • /usr/lib/python3/dist-packages/khmer/khmer_args.py
  • /usr/lib/python3/dist-packages/khmer/_khmer.cpython-311-x86_64-linux-gnu.so
  • /usr/lib/python3/dist-packages/khmer/khmer_logger.py
  • /usr/lib/python3/dist-packages/khmer/_oxli/assembly.cpp
  • /usr/lib/python3/dist-packages/khmer/_oxli/assembly.cpython-311-x86_64-linux-gnu.so
  • /usr/lib/python3/dist-packages/khmer/_oxli/assembly.pxd
  • /usr/lib/python3/dist-packages/khmer/_oxli/assembly.pyx
  • /usr/lib/python3/dist-packages/khmer/_oxli/graphs.cpp
  • /usr/lib/python3/dist-packages/khmer/_oxli/graphs.cpython-311-x86_64-linux-gnu.so
  • /usr/lib/python3/dist-packages/khmer/_oxli/graphs.pxd
  • /usr/lib/python3/dist-packages/khmer/_oxli/graphs.pyx
  • /usr/lib/python3/dist-packages/khmer/_oxli/hashing.cpp
  • /usr/lib/python3/dist-packages/khmer/_oxli/hashing.cpython-311-x86_64-linux-gnu.so
  • /usr/lib/python3/dist-packages/khmer/_oxli/hashing.pxd
  • /usr/lib/python3/dist-packages/khmer/_oxli/hashing.pyx
  • /usr/lib/python3/dist-packages/khmer/_oxli/hashset.cpp
  • /usr/lib/python3/dist-packages/khmer/_oxli/hashset.cpython-311-x86_64-linux-gnu.so
  • /usr/lib/python3/dist-packages/khmer/_oxli/hashset.pxd
  • /usr/lib/python3/dist-packages/khmer/_oxli/hashset.pyx
  • /usr/lib/python3/dist-packages/khmer/_oxli/hllcounter.cpp
  • /usr/lib/python3/dist-packages/khmer/_oxli/hllcounter.cpython-311-x86_64-linux-gnu.so
  • /usr/lib/python3/dist-packages/khmer/_oxli/hllcounter.pxd
  • /usr/lib/python3/dist-packages/khmer/_oxli/hllcounter.pyx
  • /usr/lib/python3/dist-packages/khmer/_oxli/__init__.py
  • /usr/lib/python3/dist-packages/khmer/_oxli/labeling.cpp
  • /usr/lib/python3/dist-packages/khmer/_oxli/labeling.cpython-311-x86_64-linux-gnu.so
  • /usr/lib/python3/dist-packages/khmer/_oxli/labeling.pxd
  • /usr/lib/python3/dist-packages/khmer/_oxli/labeling.pyx
  • /usr/lib/python3/dist-packages/khmer/_oxli/legacy_partitioning.cpp
  • /usr/lib/python3/dist-packages/khmer/_oxli/legacy_partitioning.cpython-311-x86_64-linux-gnu.so
  • /usr/lib/python3/dist-packages/khmer/_oxli/legacy_partitioning.pxd
  • /usr/lib/python3/dist-packages/khmer/_oxli/legacy_partitioning.pyx
  • /usr/lib/python3/dist-packages/khmer/_oxli/oxli_exception_convert.cc
  • /usr/lib/python3/dist-packages/khmer/_oxli/oxli_exception_convert.hh
  • /usr/lib/python3/dist-packages/khmer/_oxli/oxli_types.pxd
  • /usr/lib/python3/dist-packages/khmer/_oxli/parsing.cpp
  • /usr/lib/python3/dist-packages/khmer/_oxli/parsing.cpython-311-x86_64-linux-gnu.so
  • /usr/lib/python3/dist-packages/khmer/_oxli/parsing.pxd
  • /usr/lib/python3/dist-packages/khmer/_oxli/parsing.pyx
  • /usr/lib/python3/dist-packages/khmer/_oxli/readaligner.cpp
  • /usr/lib/python3/dist-packages/khmer/_oxli/readaligner.cpython-311-x86_64-linux-gnu.so
  • /usr/lib/python3/dist-packages/khmer/_oxli/readaligner.pxd
  • /usr/lib/python3/dist-packages/khmer/_oxli/readaligner.pyx
  • /usr/lib/python3/dist-packages/khmer/_oxli/traversal.cpp
  • /usr/lib/python3/dist-packages/khmer/_oxli/traversal.cpython-311-x86_64-linux-gnu.so
  • /usr/lib/python3/dist-packages/khmer/_oxli/traversal.pxd
  • /usr/lib/python3/dist-packages/khmer/_oxli/traversal.pyx
  • /usr/lib/python3/dist-packages/khmer/_oxli/utils.cpp
  • /usr/lib/python3/dist-packages/khmer/_oxli/utils.cpython-311-x86_64-linux-gnu.so
  • /usr/lib/python3/dist-packages/khmer/_oxli/utils.pxd
  • /usr/lib/python3/dist-packages/khmer/_oxli/utils.pyx
  • /usr/lib/python3/dist-packages/khmer/tests/graph_features.py
  • /usr/lib/python3/dist-packages/khmer/tests/__init__.py
  • /usr/lib/python3/dist-packages/khmer/tests/khmer_tst_utils.py
  • /usr/lib/python3/dist-packages/khmer/tests/table_fixtures.py
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Versiones, suites y repositorios

Cada fila es metadato del índice de paquetes para una versión, arquitectura, suite y repositorio. Nombres, URL y tamaños vienen de la fuente; un enlace es un punto de descarga que puede cambiar, no una redistribución de OpenFactory.

Ningún registro publicado coincide con este filtro de suite y arquitectura.

Sumas de comprobación y fechas de observación

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

Completitud del registro

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description
25/25
Artifact path and source digest
25/25
Dependency metadata
15/15
Package-file index
15/15
Homepage
5/5
License text
0/5
Source package or maintainer
10/10

Recorded total: 95/100

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Fuentes y procedencia

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

  • Debian 12 (Bookworm) main amd64Sep 1, 2026

    Authoritative source; repository metadata signature verified, revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: main/binary-amd64/Packages.xz
    Expected SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
    Observed SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
    Result: match verified