Linux workstation

Debian 12 (Bookworm) native package

ncbi-tools-bin

NCBI libraries for biology applications (text-based utilities)

Packages / Debian 12 (Bookworm) / science / ncbi-tools-bin

[Source: ncbi-tools6]

Package: ncbi-tools-bin (6.1.20170106+dfsg1-10)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [www.ncbi.nlm.nih.gov]

Similar packages:

  • [libncbi6]

    NCBI libraries for biology applications

  • [libncbi6-dev]

    NCBI libraries for biology applications (development files)

  • [libvibrant6b]

    NCBI libraries for graphic biology applications

  • [libvibrant6-dev]

    NCBI libraries for graphic biology applications (development files)

  • [ncbi-cn3d]

    3-dimensional viewer for biological molecules

  • [ncbi-data]

    Platform-independent data for the NCBI toolkit

  • [ncbi-rrna-data]

    large rRNA BLAST databases distributed with the NCBI toolkit

  • [ncbi-tools-x11]

    NCBI libraries for biology applications (X-based utilities)

NCBI libraries for biology applications (text-based utilities)

Other Packages Related to ncbi-tools-bin:

  • dep: [libncbi6] (<< 6.1.20170106+dfsg1.1)

    NCBI libraries for biology applications

  • dep: [libncbi6] (>= 6.1.20170106+dfsg1)

    NCBI libraries for biology applications

  • dep: [libc6] (>= 2.34)

    GNU C Library: Shared libraries

  • sug: [libvibrant6b]

    NCBI libraries for graphic biology applications

  • sug: [ncbi-blast+]

    next generation suite of BLAST sequence search tools

  • sug: [ncbi-cn3d]

    3-dimensional viewer for biological molecules

  • sug: [ncbi-tools-x11]

    NCBI libraries for biology applications (X-based utilities)

Download ncbi-tools-bin

ArchitecturePackage SizeInstalled SizeFiles
amd641.9 MiB3.7 MiB[list of files]
arm641.8 MiB5.0 MiB[list of files]

Package file paths (101)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

  • /usr/bin/asn2all
  • /usr/bin/asn2asn
  • /usr/bin/asn2ff
  • /usr/bin/asn2fsa
  • /usr/bin/asn2gb
  • /usr/bin/asn2idx
  • /usr/bin/asn2xml
  • /usr/bin/asndhuff
  • /usr/bin/asndisc
  • /usr/bin/asnmacro
  • /usr/bin/asntool
  • /usr/bin/asnval
  • /usr/bin/checksub
  • /usr/bin/cleanasn
  • /usr/bin/debruijn
  • /usr/bin/errhdr
  • /usr/bin/fa2htgs
  • /usr/bin/findspl
  • /usr/bin/gbseqget
  • /usr/bin/gene2xml
  • /usr/bin/getmesh
  • /usr/bin/getpub
  • /usr/bin/gil2bin
  • /usr/bin/idfetch
  • /usr/bin/indexpub
  • /usr/bin/insdseqget
  • /usr/bin/makeset
  • /usr/bin/nps2gps
  • /usr/bin/sortbyquote
  • /usr/bin/spidey
  • /usr/bin/subfuse
  • /usr/bin/taxblast
  • /usr/bin/tbl2asn
  • /usr/bin/trna2sap
  • /usr/bin/trna2tbl
  • /usr/bin/vecscreen
  • /usr/share/doc/ncbi-tools-bin/asnpub.all.gz
  • /usr/share/doc/ncbi-tools-bin/changelog.Debian.gz
  • /usr/share/doc/ncbi-tools-bin/changelog.gz
  • /usr/share/doc/ncbi-tools-bin/copyright
  • /usr/share/doc/ncbi-tools-bin/examples/gbf2tbl.pl
  • /usr/share/doc/ncbi-tools-bin/examples/patric2tbl.pl
  • /usr/share/doc/ncbi-tools-bin/examples/rast2sqn.sh
  • /usr/share/doc/ncbi-tools-bin/examples/rastbatch.sh
  • /usr/share/doc/ncbi-tools-bin/examples/tblfix.pl
  • /usr/share/doc/ncbi-tools-bin/examples/trna2tbl.rb
  • /usr/share/doc/ncbi-tools-bin/gene2xml.txt.gz
  • /usr/share/doc/ncbi-tools-bin/medline.prt.gz
  • /usr/share/doc/ncbi-tools-bin/NEWS.Debian.gz
  • /usr/share/doc/ncbi-tools-bin/README.asn2xml
  • /usr/share/doc/ncbi-tools-bin/README.fa2htgs.gz
  • /usr/share/doc/ncbi-tools-bin/README.gz
  • /usr/share/doc/ncbi-tools-bin/README.test
  • /usr/share/doc/ncbi-tools-bin/run-unit-test.gz
  • /usr/share/doc/ncbi-tools-bin/tbl2asn.txt.gz
  • /usr/share/doc/ncbi-tools-bin/test-data/dsRNA_viruses.ags.gz
  • /usr/share/doc/ncbi-tools-bin/test-data/dsRNA_viruses.gene_info.gz
  • /usr/share/doc/ncbi-tools-bin/test-data/idfetch_g1234.npset.gz
  • /usr/share/doc/ncbi-tools-bin/test-data/nc0225.aso.gz
  • /usr/share/doc/ncbi-tools-bin/test-data/Sc_16.fsa
  • /usr/share/doc/ncbi-tools-bin/test-data/Sc_16.sbt
  • /usr/share/doc/ncbi-tools-bin/test-data/Sc_16.tbl
  • /usr/share/doc/ncbi-tools-bin/test-data/spidey_genome.fasta.gz
  • /usr/share/doc/ncbi-tools-bin/test-data/spidey_mRNA.fasta.gz
  • /usr/share/doc/ncbi-tools-bin/test-data/trnascan-se_sample.output
  • /usr/share/man/man1/asn2all.1.gz
  • /usr/share/man/man1/asn2asn.1.gz
  • /usr/share/man/man1/asn2ff.1.gz
  • /usr/share/man/man1/asn2fsa.1.gz
  • /usr/share/man/man1/asn2gb.1.gz
  • /usr/share/man/man1/asn2idx.1.gz
  • /usr/share/man/man1/asn2xml.1.gz
  • /usr/share/man/man1/asndhuff.1.gz
  • /usr/share/man/man1/asndisc.1.gz
  • /usr/share/man/man1/asnmacro.1.gz
  • /usr/share/man/man1/asntool.1.gz
  • /usr/share/man/man1/asnval.1.gz
  • /usr/share/man/man1/checksub.1.gz
  • /usr/share/man/man1/cleanasn.1.gz
  • /usr/share/man/man1/debruijn.1.gz
  • /usr/share/man/man1/errhdr.1.gz
  • /usr/share/man/man1/fa2htgs.1.gz
  • /usr/share/man/man1/findspl.1.gz
  • /usr/share/man/man1/gbseqget.1.gz
  • /usr/share/man/man1/gene2xml.1.gz
  • /usr/share/man/man1/getmesh.1.gz
  • /usr/share/man/man1/getpub.1.gz
  • /usr/share/man/man1/gil2bin.1.gz
  • /usr/share/man/man1/idfetch.1.gz
  • /usr/share/man/man1/indexpub.1.gz
  • /usr/share/man/man1/insdseqget.1.gz
  • /usr/share/man/man1/makeset.1.gz
  • /usr/share/man/man1/nps2gps.1.gz
  • /usr/share/man/man1/sortbyquote.1.gz
  • /usr/share/man/man1/spidey.1.gz
  • /usr/share/man/man1/subfuse.1.gz
  • /usr/share/man/man1/taxblast.1.gz
  • /usr/share/man/man1/tbl2asn.1.gz
  • /usr/share/man/man1/trna2sap.1.gz
  • /usr/share/man/man1/trna2tbl.1.gz
  • /usr/share/man/man1/vecscreen.1.gz

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Use this package

OpenFactory can boot this operating system in a browser VM, or start a build that includes the native package name from this record.

Try Debian 12 (Bookworm) in the browserBuild an image that includes ncbi-tools-bin

Versions, suites, and repositories

Each row is recorded package-index metadata for one version, architecture, suite, and repository. Names, URLs, and sizes are source-reported; a link is a potentially mutable retrieval location, not an OpenFactory redistribution claim or proof that OpenFactory retained the artifact bytes.

VersionReleaseArchitectureRepositoryPackage sizeInstalled sizePublisher repository artifact
6.1.20170106+dfsg1-10bookworm / mainamd64Debian 12 · main · amd641.9 MiB3.7 MiBpool/main/n/ncbi-tools6/ncbi-tools-bin_6.1.20170106+dfsg1-10_amd64.deb
6.1.20170106+dfsg1-10bookworm / mainarm64Debian 12 · main · arm641.8 MiB5.0 MiBpool/main/n/ncbi-tools6/ncbi-tools-bin_6.1.20170106+dfsg1-10_arm64.deb

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Checksums and observation dates

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

6.1.20170106+dfsg1-10 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 4db1d560988c2e4e28a72dcb225e218a5f94eff3e68a8ef89710ca6972a37ab1

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' '4db1d560988c2e4e28a72dcb225e218a5f94eff3e68a8ef89710ca6972a37ab1' 'ncbi-tools-bin_6.1.20170106+dfsg1-10_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

6.1.20170106+dfsg1-10 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: c36ec75d55336f6c0f95089cf890ccf18ecd4b5ea4b0ed422e5584f8100e8070

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' 'c36ec75d55336f6c0f95089cf890ccf18ecd4b5ea4b0ed422e5584f8100e8070' 'ncbi-tools-bin_6.1.20170106+dfsg1-10_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00

Catalog record completeness

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description
25/25
Artifact path and source digest
25/25
Dependency metadata
15/15
Package-file index
15/15
Homepage
5/5
License text
0/5
Source package or maintainer
10/10

Recorded total: 95/100

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5, Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Sources and provenance

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

  • Debian 12 (Bookworm) main amd64Sep 1, 2026

    Authoritative source; repository metadata signature verified, revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: main/binary-amd64/Packages.xz
    Expected SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
    Observed SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
    Result: match verified

  • Debian 12 (Bookworm) main arm64Sep 1, 2026

    Authoritative source; repository metadata signature verified, revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: main/binary-arm64/Packages.xz
    Expected SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
    Observed SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
    Result: match verified