Linux workstation

Debian 12 (Bookworm) native package

obitools

programs to analyze NGS data in a DNA metabarcoding context

Packages / Debian 12 (Bookworm) / python / obitools

[Source: obitools]

Package: obitools

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [pypi.python.org]

programs to analyze NGS data in a DNA metabarcoding context

Ningún registro publicado coincide con este filtro de suite y arquitectura.

Rutas de archivos del paquete (200)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

  • /usr/bin/ali2consensus
  • /usr/bin/ecodbtaxstat
  • /usr/bin/ecotag
  • /usr/bin/ecotaxspecificity
  • /usr/bin/ecotaxstat
  • /usr/bin/extractreads
  • /usr/bin/extractreads2
  • /usr/bin/illuminapairedend
  • /usr/bin/ngsfilter
  • /usr/bin/obiaddtaxids
  • /usr/bin/obiannotate
  • /usr/bin/obiclean
  • /usr/bin/obicomplement
  • /usr/bin/obiconvert
  • /usr/bin/obicount
  • /usr/bin/obicut
  • /usr/bin/obidistribute
  • /usr/bin/obiextract
  • /usr/bin/obigrep
  • /usr/bin/obihead
  • /usr/bin/obijoinpairedend
  • /usr/bin/obipr2
  • /usr/bin/obisample
  • /usr/bin/obiselect
  • /usr/bin/obisilva
  • /usr/bin/obisort
  • /usr/bin/obisplit
  • /usr/bin/obistat
  • /usr/bin/obisubset
  • /usr/bin/obitab
  • /usr/bin/obitail
  • /usr/bin/obitaxonomy
  • /usr/bin/obiuniq
  • /usr/bin/oligotag
  • /usr/lib/python3/dist-packages/OBITools-1.2.13.egg-info/dependency_links.txt
  • /usr/lib/python3/dist-packages/OBITools-1.2.13.egg-info/not-zip-safe
  • /usr/lib/python3/dist-packages/OBITools-1.2.13.egg-info/PKG-INFO
  • /usr/lib/python3/dist-packages/OBITools-1.2.13.egg-info/requires.txt
  • /usr/lib/python3/dist-packages/OBITools-1.2.13.egg-info/top_level.txt
  • /usr/lib/python3/dist-packages/obitools/align/_assemble.cpython-311-x86_64-linux-gnu.so
  • /usr/lib/python3/dist-packages/obitools/align/_codonnws.cpython-311-x86_64-linux-gnu.so
  • /usr/lib/python3/dist-packages/obitools/align/_dynamic.cpython-311-x86_64-linux-gnu.so
  • /usr/lib/python3/dist-packages/obitools/align/_freeendgap.cpython-311-x86_64-linux-gnu.so
  • /usr/lib/python3/dist-packages/obitools/align/_freeendgapfm.cpython-311-x86_64-linux-gnu.so
  • /usr/lib/python3/dist-packages/obitools/align/_gprofilenws.cpython-311-x86_64-linux-gnu.so
  • /usr/lib/python3/dist-packages/obitools/align/homopolymere.py
  • /usr/lib/python3/dist-packages/obitools/align/__init__.py
  • /usr/lib/python3/dist-packages/obitools/align/_lcs.cpython-311-x86_64-linux-gnu.so
  • /usr/lib/python3/dist-packages/obitools/alignment/ace.py
  • /usr/lib/python3/dist-packages/obitools/alignment/__init__.py
  • /usr/lib/python3/dist-packages/obitools/align/_nws.cpython-311-x86_64-linux-gnu.so
  • /usr/lib/python3/dist-packages/obitools/align/_nwsdnabyprot.cpython-311-x86_64-linux-gnu.so
  • /usr/lib/python3/dist-packages/obitools/align/_profilenws.cpython-311-x86_64-linux-gnu.so
  • /usr/lib/python3/dist-packages/obitools/align/_qsassemble.cpython-311-x86_64-linux-gnu.so
  • /usr/lib/python3/dist-packages/obitools/align/_qsrassemble.cpython-311-x86_64-linux-gnu.so
  • /usr/lib/python3/dist-packages/obitools/align/_rassemble.cpython-311-x86_64-linux-gnu.so
  • /usr/lib/python3/dist-packages/obitools/align/ssearch.py
  • /usr/lib/python3/dist-packages/obitools/align/_upperbond.cpython-311-x86_64-linux-gnu.so
  • /usr/lib/python3/dist-packages/obitools/barcodecoverage/calcBc.py
  • /usr/lib/python3/dist-packages/obitools/barcodecoverage/drawBcTree.py
  • /usr/lib/python3/dist-packages/obitools/barcodecoverage/findErrors.py
  • /usr/lib/python3/dist-packages/obitools/barcodecoverage/__init__.py
  • /usr/lib/python3/dist-packages/obitools/barcodecoverage/readFiles.py
  • /usr/lib/python3/dist-packages/obitools/barcodecoverage/writeBcTree.py
  • /usr/lib/python3/dist-packages/obitools/blast/__init__.py
  • /usr/lib/python3/dist-packages/obitools/carto/__init__.py
  • /usr/lib/python3/dist-packages/obitools/collections.py
  • /usr/lib/python3/dist-packages/obitools/decorator.py
  • /usr/lib/python3/dist-packages/obitools/distances/__init__.py
  • /usr/lib/python3/dist-packages/obitools/distances/observed.py
  • /usr/lib/python3/dist-packages/obitools/distances/phylip.py
  • /usr/lib/python3/dist-packages/obitools/distances/r.py
  • /usr/lib/python3/dist-packages/obitools/dnahash/__init__.py
  • /usr/lib/python3/dist-packages/obitools/ecobarcode/databases.py
  • /usr/lib/python3/dist-packages/obitools/ecobarcode/ecotag.py
  • /usr/lib/python3/dist-packages/obitools/ecobarcode/__init__.py
  • /usr/lib/python3/dist-packages/obitools/ecobarcode/options.py
  • /usr/lib/python3/dist-packages/obitools/ecobarcode/rawdata.py
  • /usr/lib/python3/dist-packages/obitools/ecobarcode/taxonomy.py
  • /usr/lib/python3/dist-packages/obitools/ecopcr/annotation.py
  • /usr/lib/python3/dist-packages/obitools/ecopcr/__init__.py
  • /usr/lib/python3/dist-packages/obitools/ecopcr/options.py
  • /usr/lib/python3/dist-packages/obitools/ecopcr/sequence.py
  • /usr/lib/python3/dist-packages/obitools/ecopcr/taxonomy.py
  • /usr/lib/python3/dist-packages/obitools/ecotag/__init__.py
  • /usr/lib/python3/dist-packages/obitools/ecotag/parser.py
  • /usr/lib/python3/dist-packages/obitools/eutils/__init__.py
  • /usr/lib/python3/dist-packages/obitools/fasta/_fasta.cpython-311-x86_64-linux-gnu.so
  • /usr/lib/python3/dist-packages/obitools/fasta/__init__.py
  • /usr/lib/python3/dist-packages/obitools/fast.py
  • /usr/lib/python3/dist-packages/obitools/fastq/_fastq.cpython-311-x86_64-linux-gnu.so
  • /usr/lib/python3/dist-packages/obitools/fastq/__init__.py
  • /usr/lib/python3/dist-packages/obitools/fnaqual/fasta.py
  • /usr/lib/python3/dist-packages/obitools/fnaqual/__init__.py
  • /usr/lib/python3/dist-packages/obitools/fnaqual/quality.py
  • /usr/lib/python3/dist-packages/obitools/format/_format.cpython-311-x86_64-linux-gnu.so
  • /usr/lib/python3/dist-packages/obitools/format/genericparser/_genericparser.cpython-311-x86_64-linux-gnu.so
  • /usr/lib/python3/dist-packages/obitools/format/genericparser/__init__.py
  • /usr/lib/python3/dist-packages/obitools/format/__init__.py
  • /usr/lib/python3/dist-packages/obitools/format/ontology/go_obo.py
  • /usr/lib/python3/dist-packages/obitools/format/ontology/__init__.py
  • /usr/lib/python3/dist-packages/obitools/format/options.py
  • /usr/lib/python3/dist-packages/obitools/format/sequence/embl.py
  • /usr/lib/python3/dist-packages/obitools/format/sequence/fasta.py
  • /usr/lib/python3/dist-packages/obitools/format/sequence/fastq.py
  • /usr/lib/python3/dist-packages/obitools/format/sequence/fnaqual.py
  • /usr/lib/python3/dist-packages/obitools/format/sequence/genbank.py
  • /usr/lib/python3/dist-packages/obitools/format/sequence/__init__.py
  • /usr/lib/python3/dist-packages/obitools/format/sequence/tagmatcher.py
  • /usr/lib/python3/dist-packages/obitools/goa/__init__.py
  • /usr/lib/python3/dist-packages/obitools/goa/parser.py
  • /usr/lib/python3/dist-packages/obitools/graph/algorithms/clique.py
  • /usr/lib/python3/dist-packages/obitools/graph/algorithms/compact.py
  • /usr/lib/python3/dist-packages/obitools/graph/algorithms/component.py
  • /usr/lib/python3/dist-packages/obitools/graph/algorithms/__init__.py
  • /usr/lib/python3/dist-packages/obitools/graph/dag.py
  • /usr/lib/python3/dist-packages/obitools/graph/__init__.py
  • /usr/lib/python3/dist-packages/obitools/graph/layout/__init__.py
  • /usr/lib/python3/dist-packages/obitools/graph/layout/radialtree.py
  • /usr/lib/python3/dist-packages/obitools/graph/rootedtree.py
  • /usr/lib/python3/dist-packages/obitools/graph/tree.py
  • /usr/lib/python3/dist-packages/obitools/gzip.py
  • /usr/lib/python3/dist-packages/obitools/__init__.py
  • /usr/lib/python3/dist-packages/obitools/interactive/__init__.py
  • /usr/lib/python3/dist-packages/obitools/location/feature.py
  • /usr/lib/python3/dist-packages/obitools/location/__init__.py
  • /usr/lib/python3/dist-packages/obitools/metabarcoding/__init__.py
  • /usr/lib/python3/dist-packages/obitools/metabarcoding/options.py
  • /usr/lib/python3/dist-packages/obitools/obischemas/__init__.py
  • /usr/lib/python3/dist-packages/obitools/obischemas/kb/extern.py
  • /usr/lib/python3/dist-packages/obitools/obischemas/kb/__init__.py
  • /usr/lib/python3/dist-packages/obitools/obischemas/options.py
  • /usr/lib/python3/dist-packages/obitools/_obitools.cpython-311-x86_64-linux-gnu.so
  • /usr/lib/python3/dist-packages/obitools/obo/go/__init__.py
  • /usr/lib/python3/dist-packages/obitools/obo/go/parser.py
  • /usr/lib/python3/dist-packages/obitools/obo/__init__.py
  • /usr/lib/python3/dist-packages/obitools/obo/parser.py
  • /usr/lib/python3/dist-packages/obitools/options/bioseqcutter.py
  • /usr/lib/python3/dist-packages/obitools/options/bioseqedittag.py
  • /usr/lib/python3/dist-packages/obitools/options/_bioseqfilter.cpython-311-x86_64-linux-gnu.so
  • /usr/lib/python3/dist-packages/obitools/options/bioseqfilter.py
  • /usr/lib/python3/dist-packages/obitools/options/__init__.py
  • /usr/lib/python3/dist-packages/obitools/options/_options.cpython-311-x86_64-linux-gnu.so
  • /usr/lib/python3/dist-packages/obitools/options/taxonomyfilter.py
  • /usr/lib/python3/dist-packages/obitools/parallel/__init__.py
  • /usr/lib/python3/dist-packages/obitools/parallel/jobqueue.py
  • /usr/lib/python3/dist-packages/obitools/phylogeny/__init__.py
  • /usr/lib/python3/dist-packages/obitools/phylogeny/newick.py
  • /usr/lib/python3/dist-packages/obitools/profile/__init__.py
  • /usr/lib/python3/dist-packages/obitools/profile/_profile.cpython-311-x86_64-linux-gnu.so
  • /usr/lib/python3/dist-packages/obitools/sample.py
  • /usr/lib/python3/dist-packages/obitools/seqdb/blastdb/__init__.py
  • /usr/lib/python3/dist-packages/obitools/seqdb/dnaparser.py
  • /usr/lib/python3/dist-packages/obitools/seqdb/embl/__init__.py
  • /usr/lib/python3/dist-packages/obitools/seqdb/embl/parser.py
  • /usr/lib/python3/dist-packages/obitools/seqdb/genbank/__init__.py
  • /usr/lib/python3/dist-packages/obitools/seqdb/genbank/ncbi.py
  • /usr/lib/python3/dist-packages/obitools/seqdb/genbank/parser.py
  • /usr/lib/python3/dist-packages/obitools/seqdb/__init__.py
  • /usr/lib/python3/dist-packages/obitools/sequenceencoder/__init__.py
  • /usr/lib/python3/dist-packages/obitools/solexa/__init__.py
  • /usr/lib/python3/dist-packages/obitools/solexaPairEnd.py
  • /usr/lib/python3/dist-packages/obitools/statistics/hypergeometric.py
  • /usr/lib/python3/dist-packages/obitools/statistics/__init__.py
  • /usr/lib/python3/dist-packages/obitools/statistics/noncentralhypergeo.py
  • /usr/lib/python3/dist-packages/obitools/SVGdraw.py
  • /usr/lib/python3/dist-packages/obitools/svg.py
  • /usr/lib/python3/dist-packages/obitools/table/csv.py
  • /usr/lib/python3/dist-packages/obitools/table/__init__.py
  • /usr/lib/python3/dist-packages/obitools/tagmatcher/__init__.py
  • /usr/lib/python3/dist-packages/obitools/tagmatcher/options.py
  • /usr/lib/python3/dist-packages/obitools/tagmatcher/parser.py
  • /usr/lib/python3/dist-packages/obitools/thermo/__init__.py
  • /usr/lib/python3/dist-packages/obitools/tools/__init__.py
  • /usr/lib/python3/dist-packages/obitools/tools/_solexapairend.cpython-311-x86_64-linux-gnu.so
  • /usr/lib/python3/dist-packages/obitools/tools/solexapairend.py
  • /usr/lib/python3/dist-packages/obitools/tree/dot.py
  • /usr/lib/python3/dist-packages/obitools/tree/__init__.py
  • /usr/lib/python3/dist-packages/obitools/tree/layout.py
  • /usr/lib/python3/dist-packages/obitools/tree/newick.py
  • /usr/lib/python3/dist-packages/obitools/tree/svg.py
  • /usr/lib/python3/dist-packages/obitools/tree/unrooted.py
  • /usr/lib/python3/dist-packages/obitools/unit/__init__.py
  • /usr/lib/python3/dist-packages/obitools/unit/obitools/__init__.py
  • /usr/lib/python3/dist-packages/obitools/utils/bioseq.py
  • /usr/lib/python3/dist-packages/obitools/utils/crc64.py
  • /usr/lib/python3/dist-packages/obitools/utils/__init__.py
  • /usr/lib/python3/dist-packages/obitools/utils/iterator.py
  • /usr/lib/python3/dist-packages/obitools/utils/_utils.cpython-311-x86_64-linux-gnu.so
  • /usr/lib/python3/dist-packages/obitools/version.py
  • /usr/lib/python3/dist-packages/obitools/word/_binary.cpython-311-x86_64-linux-gnu.so
  • /usr/lib/python3/dist-packages/obitools/word/__init__.py
  • /usr/lib/python3/dist-packages/obitools/word/options.py
  • /usr/lib/python3/dist-packages/obitools/word/predicate.py
  • /usr/lib/python3/dist-packages/obitools/word/_readindex.cpython-311-x86_64-linux-gnu.so
  • /usr/lib/python3/dist-packages/obitools/zipfile.py
  • /usr/share/doc/obitools/changelog.Debian.amd64.gz
  • /usr/share/doc/obitools/changelog.Debian.gz
  • /usr/share/doc/obitools/copyright
  • /usr/share/doc/obitools/NEWS.Debian.gz

Usar este paquete

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Probar Debian 12 (Bookworm) en el navegadorConstruir una imagen que incluye obitools

Versiones, suites y repositorios

Cada fila es metadato del índice de paquetes para una versión, arquitectura, suite y repositorio. Nombres, URL y tamaños vienen de la fuente; un enlace es un punto de descarga que puede cambiar, no una redistribución de OpenFactory.

Ningún registro publicado coincide con este filtro de suite y arquitectura.

Sumas de comprobación y fechas de observación

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

Completitud del registro

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description
25/25
Artifact path and source digest
25/25
Dependency metadata
15/15
Package-file index
15/15
Homepage
5/5
License text
0/5
Source package or maintainer
10/10

Recorded total: 95/100

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Fuentes y procedencia

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

  • Debian 12 (Bookworm) main amd64Sep 1, 2026

    Authoritative source; repository metadata signature verified, revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: main/binary-amd64/Packages.xz
    Expected SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
    Observed SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
    Result: match verified