Debian 12 (Bookworm) native package

phast

phylogenetic analysis with space/time models

Packages / Debian 12 (Bookworm) / science / phast

[Source: phast]

Package: phast

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [compgen.cshl.edu]

phylogenetic analysis with space/time models

Ningún registro publicado coincide con este filtro de suite y arquitectura.

Rutas de archivos del paquete (197)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/all_dists
/usr/bin/base_evolve
/usr/bin/chooseLines
/usr/bin/clean_genes
/usr/bin/consEntropy
/usr/bin/convert_coords
/usr/bin/display_rate_matrix
/usr/bin/draw_tree
/usr/bin/eval_predictions
/usr/bin/exoniphy
/usr/bin/hmm_train
/usr/bin/hmm_tweak
/usr/bin/hmm_view
/usr/bin/indelFit
/usr/bin/indelHistory
/usr/bin/maf_parse
/usr/bin/makeHKY
/usr/bin/modFreqs
/usr/bin/msa_diff
/usr/bin/msa_split
/usr/bin/msa_view
/usr/bin/phast
/usr/bin/phastBias
/usr/bin/phastCons
/usr/bin/phastMotif
/usr/bin/phastOdds
/usr/bin/phyloBoot
/usr/bin/phyloFit
/usr/bin/phyloP
/usr/bin/refeature
/usr/bin/stringiphy
/usr/bin/tree_doctor
/usr/bin/treeGen
/usr/share/doc/phast/changelog.Debian.amd64.gz
/usr/share/doc/phast/changelog.Debian.arm64.gz
/usr/share/doc/phast/changelog.Debian.gz
/usr/share/doc/phast/copyright
/usr/share/doc/phast/examples/chr22.14500000-15500000.fa.xz
/usr/share/doc/phast/examples/chr22.14500000-15500000.gp.xz
/usr/share/doc/phast/examples/chr22.14500000-15500000.maf.xz
/usr/share/doc/phast/examples/chr22_correct.oss.gz.xz
/usr/share/doc/phast/examples/cons-4way_correct.dat.xz
/usr/share/doc/phast/examples/cons_correct.dat.xz
/usr/share/doc/phast/examples/cons-hmr_correct.dat.xz
/usr/share/doc/phast/examples/elemcfa.bed
/usr/share/doc/phast/examples/elements-4way_correct.bed
/usr/share/doc/phast/examples/elements_correct.bed
/usr/share/doc/phast/examples/f81.mod
/usr/share/doc/phast/examples/hky-dg.mod
/usr/share/doc/phast/examples/hky-em.mod
/usr/share/doc/phast/examples/hky.mod
/usr/share/doc/phast/examples/hmrc_correct.fa.xz
/usr/share/doc/phast/examples/hmrc.ss.xz
/usr/share/doc/phast/examples/hmrc_summary_correct
/usr/share/doc/phast/examples/hpmrc.fa.xz
/usr/share/doc/phast/examples/hpmrc-rev-dg-global.mod
/usr/share/doc/phast/examples/hpmrc.ss.xz
/usr/share/doc/phast/examples/jc.mod
/usr/share/doc/phast/examples/Makefile.xz
/usr/share/doc/phast/examples/rev-dg.mod
/usr/share/doc/phast/examples/rev-em.mod
/usr/share/doc/phast/examples/rev-gaps.mod
/usr/share/doc/phast/examples/rev-hmc-lnl.mod
/usr/share/doc/phast/examples/rev-hmc.postprob.xz
/usr/share/doc/phast/examples/rev-hm.mod
/usr/share/doc/phast/examples/rev-hmr2.mod
/usr/share/doc/phast/examples/rev-hmr.mod
/usr/share/doc/phast/examples/rev-lnl.mod
/usr/share/doc/phast/examples/rev.mod
/usr/share/doc/phast/examples/rev.postprob.xz
/usr/share/doc/phast/examples/testPhast.pl.xz
/usr/share/doc/phast/examples/test_phast.sh.xz
/usr/share/doc/phast/examples/unrest-cow-anc.mod
/usr/share/doc/phast/examples/unrest.mod
/usr/share/man/man1/all_dists.1.gz
/usr/share/man/man1/base_evolve.1.gz
/usr/share/man/man1/chooseLines.1.gz
/usr/share/man/man1/clean_genes.1.gz
/usr/share/man/man1/consEntropy.1.gz
/usr/share/man/man1/convert_coords.1.gz
/usr/share/man/man1/display_rate_matrix.1.gz
/usr/share/man/man1/dless.1.gz
/usr/share/man/man1/dlessP.1.gz
/usr/share/man/man1/draw_tree.1.gz
/usr/share/man/man1/eval_predictions.1.gz
/usr/share/man/man1/exoniphy.1.gz
/usr/share/man/man1/hmm_train.1.gz
/usr/share/man/man1/hmm_tweak.1.gz
/usr/share/man/man1/hmm_view.1.gz
/usr/share/man/man1/indelFit.1.gz
/usr/share/man/man1/indelHistory.1.gz
/usr/share/man/man1/maf_parse.1.gz
/usr/share/man/man1/makeHKY.1.gz
/usr/share/man/man1/modFreqs.1.gz
/usr/share/man/man1/msa_diff.1.gz
/usr/share/man/man1/msa_split.1.gz
/usr/share/man/man1/msa_view.1.gz
/usr/share/man/man1/pbsDecode.1.gz
/usr/share/man/man1/pbsEncode.1.gz
/usr/share/man/man1/pbsScoreMatrix.1.gz
/usr/share/man/man1/pbsTrain.1.gz
/usr/share/man/man1/phast.1.gz
/usr/share/man/man1/phastBias.1.gz
/usr/share/man/man1/phastCons.1.gz
/usr/share/man/man1/phastMotif.1.gz
/usr/share/man/man1/phastOdds.1.gz
/usr/share/man/man1/phyloBoot.1.gz
/usr/share/man/man1/phyloFit.1.gz
/usr/share/man/man1/phyloP.1.gz
/usr/share/man/man1/prequel.1.gz
/usr/share/man/man1/refeature.1.gz
/usr/share/man/man1/stringiphy.1.gz
/usr/share/man/man1/tree_doctor.1.gz
/usr/share/man/man1/treeGen.1.gz
/usr/share/phast/data/exoniphy/default.cm
/usr/share/phast/data/exoniphy/default-no-cns.cm
/usr/share/phast/data/exoniphy/mammals/cftr25_hybrid.nh
/usr/share/phast/data/exoniphy/mammals/default.hmm
/usr/share/phast/data/exoniphy/mammals/default-indels.hmm
/usr/share/phast/data/exoniphy/mammals/default-indels-no-cns.hmm
/usr/share/phast/data/exoniphy/mammals/default-no-cns.hmm
/usr/share/phast/data/exoniphy/mammals/hky.3'splice-1.mod
/usr/share/phast/data/exoniphy/mammals/hky.3'splice-2.mod
/usr/share/phast/data/exoniphy/mammals/hky.3'splice-3.mod
/usr/share/phast/data/exoniphy/mammals/hky.3'splice-4.mod
/usr/share/phast/data/exoniphy/mammals/hky.3'splice-5.mod
/usr/share/phast/data/exoniphy/mammals/hky.3'splice-6.mod
/usr/share/phast/data/exoniphy/mammals/hky.5'splice-1.mod
/usr/share/phast/data/exoniphy/mammals/hky.5'splice-2.mod
/usr/share/phast/data/exoniphy/mammals/hky.5'splice-3.mod
/usr/share/phast/data/exoniphy/mammals/hky.5'splice-4.mod
/usr/share/phast/data/exoniphy/mammals/hky.5'splice-5.mod
/usr/share/phast/data/exoniphy/mammals/hky.5'splice-6.mod
/usr/share/phast/data/exoniphy/mammals/hky.cds3'ss.mod
/usr/share/phast/data/exoniphy/mammals/hky.cds5'ss-1.mod
/usr/share/phast/data/exoniphy/mammals/hky.cds5'ss-2.mod
/usr/share/phast/data/exoniphy/mammals/hky.cds5'ss-3.mod
/usr/share/phast/data/exoniphy/mammals/hky.prestart-1.mod
/usr/share/phast/data/exoniphy/mammals/hky.prestart-2.mod
/usr/share/phast/data/exoniphy/mammals/hky.prestart-3.mod
/usr/share/phast/data/exoniphy/mammals/hky.prestart-4.mod
/usr/share/phast/data/exoniphy/mammals/hky.start-1.mod
/usr/share/phast/data/exoniphy/mammals/hky.start-2.mod
/usr/share/phast/data/exoniphy/mammals/hky.start-3.mod
/usr/share/phast/data/exoniphy/mammals/hky.stop-1.mod
/usr/share/phast/data/exoniphy/mammals/hky.stop-2.mod
/usr/share/phast/data/exoniphy/mammals/hky.stop-3.mod
/usr/share/phast/data/exoniphy/mammals/r3.cds-1.gc1.mod
/usr/share/phast/data/exoniphy/mammals/r3.cds-1.gc2.mod
/usr/share/phast/data/exoniphy/mammals/r3.cds-1.gc3.mod
/usr/share/phast/data/exoniphy/mammals/r3.cds-1.gc4.mod
/usr/share/phast/data/exoniphy/mammals/r3.cds-1.gc5.mod
/usr/share/phast/data/exoniphy/mammals/r3.cds-1.mod
/usr/share/phast/data/exoniphy/mammals/r3.cds-2.gc1.mod
/usr/share/phast/data/exoniphy/mammals/r3.cds-2.gc2.mod
/usr/share/phast/data/exoniphy/mammals/r3.cds-2.gc3.mod
/usr/share/phast/data/exoniphy/mammals/r3.cds-2.gc4.mod
/usr/share/phast/data/exoniphy/mammals/r3.cds-2.gc5.mod
/usr/share/phast/data/exoniphy/mammals/r3.cds-2.mod
/usr/share/phast/data/exoniphy/mammals/r3.cds-3.gc1.mod
/usr/share/phast/data/exoniphy/mammals/r3.cds-3.gc2.mod
/usr/share/phast/data/exoniphy/mammals/r3.cds-3.gc3.mod
/usr/share/phast/data/exoniphy/mammals/r3.cds-3.gc4.mod
/usr/share/phast/data/exoniphy/mammals/r3.cds-3.gc5.mod
/usr/share/phast/data/exoniphy/mammals/r3.cds-3.mod
/usr/share/phast/data/exoniphy/mammals/r3.cns.gc1.mod
/usr/share/phast/data/exoniphy/mammals/r3.cns.gc2.mod
/usr/share/phast/data/exoniphy/mammals/r3.cns.gc3.mod
/usr/share/phast/data/exoniphy/mammals/r3.cns.gc4.mod
/usr/share/phast/data/exoniphy/mammals/r3.cns.gc5.mod
/usr/share/phast/data/exoniphy/mammals/r3.cns.mod
/usr/share/phast/data/exoniphy/mammals/r3.ncns.gc1.mod
/usr/share/phast/data/exoniphy/mammals/r3.ncns.gc2.mod
/usr/share/phast/data/exoniphy/mammals/r3.ncns.gc3.mod
/usr/share/phast/data/exoniphy/mammals/r3.ncns.gc4.mod
/usr/share/phast/data/exoniphy/mammals/r3.ncns.gc5.mod
/usr/share/phast/data/exoniphy/mammals/r3.ncns.mod
/usr/share/phast/data/exoniphy/mammals/r3.noncoding.gc1.mod
/usr/share/phast/data/exoniphy/mammals/r3.noncoding.gc2.mod
/usr/share/phast/data/exoniphy/mammals/r3.noncoding.gc3.mod
/usr/share/phast/data/exoniphy/mammals/r3.noncoding.gc4.mod
/usr/share/phast/data/exoniphy/mammals/r3.noncoding.gc5.mod
/usr/share/phast/data/exoniphy/mammals/r3.noncoding.mod
/usr/share/phast/data/exoniphy/models
/usr/share/phast/data/exoniphy/models-gc1
/usr/share/phast/data/exoniphy/models-gc2
/usr/share/phast/data/exoniphy/models-gc3
/usr/share/phast/data/exoniphy/models-gc4
/usr/share/phast/data/exoniphy/models-gc5
/usr/share/phast/data/exoniphy/models-no-cns
/usr/share/phast/data/exoniphy/models-no-cns-gc1
/usr/share/phast/data/exoniphy/models-no-cns-gc2
/usr/share/phast/data/exoniphy/models-no-cns-gc3
/usr/share/phast/data/exoniphy/models-no-cns-gc4
/usr/share/phast/data/exoniphy/models-no-cns-gc5
/usr/share/phast/data/phastCons/simple-coding.hmm
/usr/share/phast/data/phastCons/simple-coding-indels.hmm

Usar este paquete

OpenFactory puede arrancar este sistema operativo en una máquina virtual del navegador, o iniciar una construcción que incluye el nombre nativo del paquete de este registro.

Probar Debian 12 (Bookworm) en el navegador Construir una imagen que incluye phast

Versiones, suites y repositorios

Cada fila es metadato del índice de paquetes para una versión, arquitectura, suite y repositorio. Nombres, URL y tamaños vienen de la fuente; un enlace es un punto de descarga que puede cambiar, no una redistribución de OpenFactory.

Ningún registro publicado coincide con este filtro de suite y arquitectura.

Sumas de comprobación y fechas de observación

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

Completitud del registro

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5, Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Fuentes y procedencia

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 12 (Bookworm) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Observed SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Result: match verified
Debian 12 (Bookworm) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Observed SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Result: match verified