Debian 12 (Bookworm) native package

physamp

sample sequence alignment corresponding to phylogeny

Packages / Debian 12 (Bookworm) / science / physamp

Package: physamp (1.1.0-4)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [jydu.github.io]

sample sequence alignment corresponding to phylogeny

Other Packages Related to physamp:

dep: [libbpp-core4] (>= 2.4.1)
Bio++ Core library
dep: [libbpp-phyl12] (>= 2.4.1)
Bio++ Phylogenetic library
dep: [libbpp-seq12] (>= 2.4.1)
Bio++ Sequence library
dep: [libc6] (>= 2.34)
GNU C Library: Shared libraries
dep: [libgcc-s1] (>= 3.0)
GCC support library
dep: [libstdc++6] (>= 11)
GNU Standard C++ Library v3

Download physamp

Architecture	Package Size	Installed Size	Files
amd64	180 KiB	1.7 MiB	[list of files]
arm64	173 KiB	1.8 MiB	[list of files]

Rutas de archivos del paquete (19)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/bppalnoptim
/usr/bin/bppphysamp
/usr/share/doc/physamp/changelog.Debian.gz
/usr/share/doc/physamp/changelog.gz
/usr/share/doc/physamp/copyright
/usr/share/doc/physamp/examples/LSU/LSU.dnd
/usr/share/doc/physamp/examples/LSU/LSU.phy
/usr/share/doc/physamp/examples/LSU/PhySamp.bpp
/usr/share/doc/physamp/examples/PF01049/AlnOptimAuto.bpp
/usr/share/doc/physamp/examples/PF01049/AlnOptimFasttree.bpp
/usr/share/doc/physamp/examples/PF01049/AlnOptimFasttreeStop.bpp
/usr/share/doc/physamp/examples/PF01049/diagnostic.R
/usr/share/doc/physamp/examples/PF01049/PF01049_fasttree.dnd
/usr/share/doc/physamp/examples/PF01049/PF01049_full.txt
/usr/share/doc/physamp/examples/PF01049/README
/usr/share/doc/physamp/examples/PF01049/runFasttree.sh
/usr/share/info/physamp.info.gz
/usr/share/man/man1/bppalnoptim.1.gz
/usr/share/man/man1/bppphysamp.1.gz

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Usar este paquete

OpenFactory puede arrancar este sistema operativo en una máquina virtual del navegador, o iniciar una construcción que incluye el nombre nativo del paquete de este registro.

Probar Debian 12 (Bookworm) en el navegador Construir una imagen que incluye physamp

Versiones, suites y repositorios

Cada fila es metadato del índice de paquetes para una versión, arquitectura, suite y repositorio. Nombres, URL y tamaños vienen de la fuente; un enlace es un punto de descarga que puede cambiar, no una redistribución de OpenFactory.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
1.1.0-4	bookworm / main	amd64	Debian 12 · main · amd64	180 KiB	1.7 MiB	pool/main/p/physamp/physamp_1.1.0-4_amd64.deb
1.1.0-4	bookworm / main	arm64	Debian 12 · main · arm64	173 KiB	1.8 MiB	pool/main/p/physamp/physamp_1.1.0-4_arm64.deb

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Sumas de comprobación y fechas de observación

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

1.1.0-4 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 8fa7be3fa07122ff0157672d97de394812c59103733ed40cc51cca01b130b9dc

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '8fa7be3fa07122ff0157672d97de394812c59103733ed40cc51cca01b130b9dc' 'physamp_1.1.0-4_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

1.1.0-4 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 3ebc474f0d3a2bd8343fcdc3e2d7a6c3e8bdb053f0ad4fe83e69947cdf4546eb

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '3ebc474f0d3a2bd8343fcdc3e2d7a6c3e8bdb053f0ad4fe83e69947cdf4546eb' 'physamp_1.1.0-4_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00

Completitud del registro

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5, Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Fuentes y procedencia

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 12 (Bookworm) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Observed SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Result: match verified
Debian 12 (Bookworm) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Observed SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Result: match verified