Linux workstation

Debian 12 (Bookworm) native package

prokka

rapid annotation of prokaryotic genomes

Packages / Debian 12 (Bookworm) / science / prokka

Package: prokka (1.14.6+dfsg-4)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [www.vicbioinformatics.com]

rapid annotation of prokaryotic genomes

Other Packages Related to prokka:

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  • dep: [parallel]

    build and execute command lines from standard input in parallel

  • dep: [libbio-perl-perl]

    BioPerl core perl modules

  • dep: [ncbi-blast+]

    next generation suite of BLAST sequence search tools

  • dep: [hmmer]

    profile hidden Markov models for protein sequence analysis

  • dep: [aragorn]

    tRNA and tmRNA detection in nucleotide sequences

  • dep: [prodigal]

    Microbial (bacterial and archaeal) gene finding program

  • dep: [ncbi-tools-bin]

    NCBI libraries for biology applications (text-based utilities)

  • dep: [infernal]

    inference of RNA secondary structural alignments

  • dep: [libswiss-perl]

    Perl API to the UniProt database

  • dep: [libxml-simple-perl]

    Perl module for reading and writing XML

  • dep: [default-jre]

    Standard Java or Java compatible Runtime

  • dep: [less]

    pager program similar to more

  • dep: [libbio-searchio-hmmer-perl]

    perl parser for HMMER2 and HMMER3 output (hmmscan, hmmsearch, hmmpfam)

Download prokka

ArchitecturePackage SizeInstalled SizeFiles
amd649.5 MiB90 MiB[list of files]

Caminhos de arquivo do pacote (53)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

  • /usr/bin/prokka
  • /usr/bin/prokka-biocyc_to_fasta_db
  • /usr/bin/prokka-cdd_to_hmm
  • /usr/bin/prokka-clusters_to_hmm
  • /usr/bin/prokka-genbank_to_fasta_db
  • /usr/bin/prokka-genpept_to_fasta_db
  • /usr/bin/prokka-hamap_to_hmm
  • /usr/bin/prokka-uniprot_to_fasta_db
  • /usr/share/doc/prokka/changelog.Debian.gz
  • /usr/share/doc/prokka/changelog.gz
  • /usr/share/doc/prokka/copyright
  • /usr/share/doc/prokka/get-additional-data
  • /usr/share/doc/prokka/NEWS.Debian.gz
  • /usr/share/doc/prokka/README.Debian
  • /usr/share/doc/prokka/README.md.gz
  • /usr/share/man/man1/prokka.1.gz
  • /usr/share/man/man1/prokka-biocyc_to_fasta_db.1.gz
  • /usr/share/man/man1/prokka-cdd_to_hmm.1.gz
  • /usr/share/man/man1/prokka-clusters_to_hmm.1.gz
  • /usr/share/man/man1/prokka-genbank_to_fasta_db.1.gz
  • /usr/share/man/man1/prokka-genpept_to_fasta_db.1.gz
  • /usr/share/man/man1/prokka-hamap_to_hmm.1.gz
  • /usr/share/man/man1/prokka-uniprot_to_fasta_db.1.gz
  • /usr/share/prokka/db/cm/Archaea
  • /usr/share/prokka/db/cm/Bacteria
  • /usr/share/prokka/db/cm/__build/archaea.sql
  • /usr/share/prokka/db/cm/__build/bacteria.sql
  • /usr/share/prokka/db/cm/__build/.gitignore
  • /usr/share/prokka/db/cm/__build/Rfam_archaea_14.1.txt
  • /usr/share/prokka/db/cm/__build/Rfam_bacteria_14.1.txt
  • /usr/share/prokka/db/cm/__build/Rfam_viruses_14.1.txt
  • /usr/share/prokka/db/cm/__build/update.sh
  • /usr/share/prokka/db/cm/__build/viruses.sql
  • /usr/share/prokka/db/cm/README
  • /usr/share/prokka/db/cm/Viruses
  • /usr/share/prokka/db/genus/Enterococcus
  • /usr/share/prokka/db/genus/Escherichia
  • /usr/share/prokka/db/genus/Staphylococcus
  • /var/lib/prokka/db/cm/Archaea
  • /var/lib/prokka/db/cm/Bacteria
  • /var/lib/prokka/db/cm/__build/archaea.sql
  • /var/lib/prokka/db/cm/__build/bacteria.sql
  • /var/lib/prokka/db/cm/__build/.gitignore
  • /var/lib/prokka/db/cm/__build/Rfam_archaea_14.1.txt
  • /var/lib/prokka/db/cm/__build/Rfam_bacteria_14.1.txt
  • /var/lib/prokka/db/cm/__build/Rfam_viruses_14.1.txt
  • /var/lib/prokka/db/cm/__build/update.sh
  • /var/lib/prokka/db/cm/__build/viruses.sql
  • /var/lib/prokka/db/cm/README
  • /var/lib/prokka/db/cm/Viruses
  • /var/lib/prokka/db/genus/Enterococcus
  • /var/lib/prokka/db/genus/Escherichia
  • /var/lib/prokka/db/genus/Staphylococcus

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Usar este pacote

O OpenFactory pode iniciar este sistema operacional em uma máquina virtual do navegador, ou começar uma construção que inclui o nome nativo do pacote deste registro.

Versões, suites e repositórios

Cada linha é metadado do índice de pacotes para uma versão, arquitetura, suite e repositório. Nomes, URLs e tamanhos vêm da fonte; um link é um ponto de obtenção mutável, não uma redistribuição da OpenFactory.

VersionReleaseArchitectureRepositoryPackage sizeInstalled sizePublisher repository artifact
1.14.6+dfsg-4bookworm / mainamd64Debian 12 · main · amd649.5 MiB90 MiBpool/main/p/prokka/prokka_1.14.6+dfsg-4_amd64.deb

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Checksums e datas de observação

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

1.14.6+dfsg-4 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 3abacf9b2a82e6745ac85a3106917b9676846ee2df1a2c304eccc27ba64933d9

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' '3abacf9b2a82e6745ac85a3106917b9676846ee2df1a2c304eccc27ba64933d9' 'prokka_1.14.6+dfsg-4_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Completude do registro

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description
25/25
Artifact path and source digest
25/25
Dependency metadata
15/15
Package-file index
15/15
Homepage
5/5
License text
0/5
Source package or maintainer
10/10

Recorded total: 95/100

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Fontes e proveniência

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

  • Authoritative source; repository metadata signature verified, revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: main/binary-amd64/Packages.xz
    Expected SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
    Observed SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
    Result: match verified