Packages / Debian 12 (Bookworm) / science / prokka
Package: prokka (1.14.6+dfsg-4)
Maintainers:
External Resources:
Homepage: [www.vicbioinformatics.com]
rapid annotation of prokaryotic genomes
Other Packages Related to prokka:
dep: [perl] [any]
Larry Wall's Practical Extraction and Report Language
dep: [parallel]
build and execute command lines from standard input in parallel
dep: [libbio-perl-perl]
BioPerl core perl modules
dep: [ncbi-blast+]
next generation suite of BLAST sequence search tools
dep: [hmmer]
profile hidden Markov models for protein sequence analysis
dep: [aragorn]
tRNA and tmRNA detection in nucleotide sequences
dep: [prodigal]
Microbial (bacterial and archaeal) gene finding program
dep: [ncbi-tools-bin]
NCBI libraries for biology applications (text-based utilities)
dep: [infernal]
inference of RNA secondary structural alignments
dep: [libswiss-perl]
Perl API to the UniProt database
dep: [libxml-simple-perl]
Perl module for reading and writing XML
dep: [default-jre]
Standard Java or Java compatible Runtime
dep: [less]
pager program similar to more
dep: [libbio-searchio-hmmer-perl]
perl parser for HMMER2 and HMMER3 output (hmmscan, hmmsearch, hmmpfam)
Download prokka
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| amd64 | 9.5 MiB | 90 MiB | [list of files] |
Caminhos de arquivo do pacote (53)
Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.
- /usr/bin/prokka
- /usr/bin/prokka-biocyc_to_fasta_db
- /usr/bin/prokka-cdd_to_hmm
- /usr/bin/prokka-clusters_to_hmm
- /usr/bin/prokka-genbank_to_fasta_db
- /usr/bin/prokka-genpept_to_fasta_db
- /usr/bin/prokka-hamap_to_hmm
- /usr/bin/prokka-uniprot_to_fasta_db
- /usr/share/doc/prokka/changelog.Debian.gz
- /usr/share/doc/prokka/changelog.gz
- /usr/share/doc/prokka/copyright
- /usr/share/doc/prokka/get-additional-data
- /usr/share/doc/prokka/NEWS.Debian.gz
- /usr/share/doc/prokka/README.Debian
- /usr/share/doc/prokka/README.md.gz
- /usr/share/man/man1/prokka.1.gz
- /usr/share/man/man1/prokka-biocyc_to_fasta_db.1.gz
- /usr/share/man/man1/prokka-cdd_to_hmm.1.gz
- /usr/share/man/man1/prokka-clusters_to_hmm.1.gz
- /usr/share/man/man1/prokka-genbank_to_fasta_db.1.gz
- /usr/share/man/man1/prokka-genpept_to_fasta_db.1.gz
- /usr/share/man/man1/prokka-hamap_to_hmm.1.gz
- /usr/share/man/man1/prokka-uniprot_to_fasta_db.1.gz
- /usr/share/prokka/db/cm/Archaea
- /usr/share/prokka/db/cm/Bacteria
- /usr/share/prokka/db/cm/__build/archaea.sql
- /usr/share/prokka/db/cm/__build/bacteria.sql
- /usr/share/prokka/db/cm/__build/.gitignore
- /usr/share/prokka/db/cm/__build/Rfam_archaea_14.1.txt
- /usr/share/prokka/db/cm/__build/Rfam_bacteria_14.1.txt
- /usr/share/prokka/db/cm/__build/Rfam_viruses_14.1.txt
- /usr/share/prokka/db/cm/__build/update.sh
- /usr/share/prokka/db/cm/__build/viruses.sql
- /usr/share/prokka/db/cm/README
- /usr/share/prokka/db/cm/Viruses
- /usr/share/prokka/db/genus/Enterococcus
- /usr/share/prokka/db/genus/Escherichia
- /usr/share/prokka/db/genus/Staphylococcus
- /var/lib/prokka/db/cm/Archaea
- /var/lib/prokka/db/cm/Bacteria
- /var/lib/prokka/db/cm/__build/archaea.sql
- /var/lib/prokka/db/cm/__build/bacteria.sql
- /var/lib/prokka/db/cm/__build/.gitignore
- /var/lib/prokka/db/cm/__build/Rfam_archaea_14.1.txt
- /var/lib/prokka/db/cm/__build/Rfam_bacteria_14.1.txt
- /var/lib/prokka/db/cm/__build/Rfam_viruses_14.1.txt
- /var/lib/prokka/db/cm/__build/update.sh
- /var/lib/prokka/db/cm/__build/viruses.sql
- /var/lib/prokka/db/cm/README
- /var/lib/prokka/db/cm/Viruses
- /var/lib/prokka/db/genus/Enterococcus
- /var/lib/prokka/db/genus/Escherichia
- /var/lib/prokka/db/genus/Staphylococcus
Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
