Debian 12 (Bookworm) native package

python3-cobra

constraint-based modeling of biological networks with Python 3

Packages / Debian 12 (Bookworm) / python / python3-cobra

[Source: python-cobra]

Package: python3-cobra (0.26.2-1)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [opencobra.github.io]

Similar packages:

[python-cobra-data]
constraint-based modeling of biological networks (data)

constraint-based modeling of biological networks with Python 3

Other Packages Related to python3-cobra:

dep: [python3-appdirs] (>= 1.4)
determining appropriate platform-specific directories (Python 3)
dep: [python3-appdirs] (<< 2)
determining appropriate platform-specific directories (Python 3)
dep: [python3-depinfo]
retrieve and print Python 3 package dependencies
dep: [python3-diskcache]
Python3 module for disk and file backed persistent cache
dep: [python3-future]
Clean single-source support for Python 3 and 2 - Python 3.x
dep: [python3-httpx]
next generation HTTP client
dep: [python3-importlib-resources]
Read resources from Python packages
dep: [python3-numpy]
Fast array facility to the Python 3 language
dep: [python3-optlang]
sympy based mathematical programming language (Python 3)
dep: [python3-pandas]
data structures for "relational" or "labeled" data
dep: [python3-pydantic]
Data validation and settings management using Python type hinting
dep: [python3-rich]
render rich text, tables, progress bars, syntax highlighting, markdown and more
dep: [python3-ruamel.yaml]
roundtrip YAML parser/emitter (Python 3 module)
dep: [python3-swiglpk] (>= 4.65.1)
Plain Python bindings for the GNU Linear Programming Kit (Python 3)
dep: [python3] [any]
interactive high-level object-oriented language (default python3 version)
dep: [python-cobra-data] (= 0.26.2-1)
constraint-based modeling of biological networks (data)
dep: [python3-simplejson]
simple, fast, extensible JSON encoder/decoder for Python 3.x
dep: [python3-tabulate]
pretty-print tabular data in Python3
dep: [python3-sbml5]
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sug: [python3-matplotlib]
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sug: [qsopt-ex]
Exact linear programming solver

Download python3-cobra

Architecture	Package Size	Installed Size	Files
amd64	1.1 MiB	1.8 MiB	[list of files]

Package file paths (85)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/lib/python3/dist-packages/cobra-0.26.2.egg-info/dependency_links.txt
/usr/lib/python3/dist-packages/cobra-0.26.2.egg-info/PKG-INFO
/usr/lib/python3/dist-packages/cobra-0.26.2.egg-info/requires.txt
/usr/lib/python3/dist-packages/cobra-0.26.2.egg-info/top_level.txt
/usr/lib/python3/dist-packages/cobra-0.26.2.egg-info/zip-safe
/usr/lib/python3/dist-packages/cobra/core/configuration.py
/usr/lib/python3/dist-packages/cobra/core/dictlist.py
/usr/lib/python3/dist-packages/cobra/core/formula.py
/usr/lib/python3/dist-packages/cobra/core/gene.py
/usr/lib/python3/dist-packages/cobra/core/group.py
/usr/lib/python3/dist-packages/cobra/core/__init__.py
/usr/lib/python3/dist-packages/cobra/core/metabolite.py
/usr/lib/python3/dist-packages/cobra/core/model.py
/usr/lib/python3/dist-packages/cobra/core/object.py
/usr/lib/python3/dist-packages/cobra/core/reaction.py
/usr/lib/python3/dist-packages/cobra/core/singleton.py
/usr/lib/python3/dist-packages/cobra/core/solution.py
/usr/lib/python3/dist-packages/cobra/core/species.py
/usr/lib/python3/dist-packages/cobra/data/iJO1366.xml.gz
/usr/lib/python3/dist-packages/cobra/data/__init__.py
/usr/lib/python3/dist-packages/cobra/data/mini_cobra.xml
/usr/lib/python3/dist-packages/cobra/data/mini.json
/usr/lib/python3/dist-packages/cobra/data/mini.mat
/usr/lib/python3/dist-packages/cobra/data/mini.yml
/usr/lib/python3/dist-packages/cobra/data/salmonella.xml.gz
/usr/lib/python3/dist-packages/cobra/data/textbook.xml.gz
/usr/lib/python3/dist-packages/cobra/exceptions.py
/usr/lib/python3/dist-packages/cobra/flux_analysis/deletion.py
/usr/lib/python3/dist-packages/cobra/flux_analysis/fastcc.py
/usr/lib/python3/dist-packages/cobra/flux_analysis/gapfilling.py
/usr/lib/python3/dist-packages/cobra/flux_analysis/geometric.py
/usr/lib/python3/dist-packages/cobra/flux_analysis/helpers.py
/usr/lib/python3/dist-packages/cobra/flux_analysis/__init__.py
/usr/lib/python3/dist-packages/cobra/flux_analysis/loopless.py
/usr/lib/python3/dist-packages/cobra/flux_analysis/moma.py
/usr/lib/python3/dist-packages/cobra/flux_analysis/parsimonious.py
/usr/lib/python3/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py
/usr/lib/python3/dist-packages/cobra/flux_analysis/reaction.py
/usr/lib/python3/dist-packages/cobra/flux_analysis/room.py
/usr/lib/python3/dist-packages/cobra/flux_analysis/variability.py
/usr/lib/python3/dist-packages/cobra/__init__.py
/usr/lib/python3/dist-packages/cobra/io/dict.py
/usr/lib/python3/dist-packages/cobra/io/__init__.py
/usr/lib/python3/dist-packages/cobra/io/json.py
/usr/lib/python3/dist-packages/cobra/io/mat.py
/usr/lib/python3/dist-packages/cobra/io/sbml.py
/usr/lib/python3/dist-packages/cobra/io/schema_v1.json
/usr/lib/python3/dist-packages/cobra/io/web/abstract_model_repository.py
/usr/lib/python3/dist-packages/cobra/io/web/bigg_models_repository.py
/usr/lib/python3/dist-packages/cobra/io/web/biomodels_repository.py
/usr/lib/python3/dist-packages/cobra/io/web/cobrapy_repository.py
/usr/lib/python3/dist-packages/cobra/io/web/__init__.py
/usr/lib/python3/dist-packages/cobra/io/web/load.py
/usr/lib/python3/dist-packages/cobra/io/yaml.py
/usr/lib/python3/dist-packages/cobra/manipulation/annotate.py
/usr/lib/python3/dist-packages/cobra/manipulation/delete.py
/usr/lib/python3/dist-packages/cobra/manipulation/__init__.py
/usr/lib/python3/dist-packages/cobra/manipulation/modify.py
/usr/lib/python3/dist-packages/cobra/manipulation/validate.py
/usr/lib/python3/dist-packages/cobra/medium/annotations.py
/usr/lib/python3/dist-packages/cobra/medium/boundary_types.py
/usr/lib/python3/dist-packages/cobra/medium/__init__.py
/usr/lib/python3/dist-packages/cobra/medium/minimal_medium.py
/usr/lib/python3/dist-packages/cobra/sampling/achr.py
/usr/lib/python3/dist-packages/cobra/sampling/core.py
/usr/lib/python3/dist-packages/cobra/sampling/hr_sampler.py
/usr/lib/python3/dist-packages/cobra/sampling/__init__.py
/usr/lib/python3/dist-packages/cobra/sampling/optgp.py
/usr/lib/python3/dist-packages/cobra/sampling/sampling.py
/usr/lib/python3/dist-packages/cobra/summary/__init__.py
/usr/lib/python3/dist-packages/cobra/summary/metabolite_summary.py
/usr/lib/python3/dist-packages/cobra/summary/model_summary.py
/usr/lib/python3/dist-packages/cobra/summary/reaction_summary.py
/usr/lib/python3/dist-packages/cobra/summary/summary.py
/usr/lib/python3/dist-packages/cobra/test/data
/usr/lib/python3/dist-packages/cobra/util/array.py
/usr/lib/python3/dist-packages/cobra/util/context.py
/usr/lib/python3/dist-packages/cobra/util/__init__.py
/usr/lib/python3/dist-packages/cobra/util/process_pool.py
/usr/lib/python3/dist-packages/cobra/util/solver.py
/usr/lib/python3/dist-packages/cobra/util/util.py
/usr/share/doc/python3-cobra/changelog.Debian.gz
/usr/share/doc/python3-cobra/copyright
/usr/share/doc/python3-cobra/README.rst.gz
/usr/share/lintian/overrides/python3-cobra

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Versions, suites, and repositories

Each row is recorded package-index metadata for one version, architecture, suite, and repository. Names, URLs, and sizes are source-reported; a link is a potentially mutable retrieval location, not an OpenFactory redistribution claim or proof that OpenFactory retained the artifact bytes.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
0.26.2-1	bookworm / main	amd64	Debian 12 · main · amd64	1.1 MiB	1.8 MiB	pool/main/p/python-cobra/python3-cobra_0.26.2-1_amd64.deb

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Checksums and observation dates

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

0.26.2-1 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 8ba34bdd35295cc18c96886f74d206bd456fede1919438d3efdff049703d1b68

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '8ba34bdd35295cc18c96886f74d206bd456fede1919438d3efdff049703d1b68' 'python3-cobra_0.26.2-1_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Catalog record completeness

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5, Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Sources and provenance

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 12 (Bookworm) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Observed SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Result: match verified
Debian 12 (Bookworm) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Observed SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Result: match verified