Debian 12 (Bookworm) native package

python3-cobra

constraint-based modeling of biological networks with Python 3

Packages / Debian 12 (Bookworm) / python / python3-cobra

[Source: python-cobra]

Package: python3-cobra

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [opencobra.github.io]

Similar packages:

[python-cobra-data]
constraint-based modeling of biological networks (data)

constraint-based modeling of biological networks with Python 3

No published records match this suite and architecture filter.

Package file paths (85)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/lib/python3/dist-packages/cobra-0.26.2.egg-info/dependency_links.txt
/usr/lib/python3/dist-packages/cobra-0.26.2.egg-info/PKG-INFO
/usr/lib/python3/dist-packages/cobra-0.26.2.egg-info/requires.txt
/usr/lib/python3/dist-packages/cobra-0.26.2.egg-info/top_level.txt
/usr/lib/python3/dist-packages/cobra-0.26.2.egg-info/zip-safe
/usr/lib/python3/dist-packages/cobra/core/configuration.py
/usr/lib/python3/dist-packages/cobra/core/dictlist.py
/usr/lib/python3/dist-packages/cobra/core/formula.py
/usr/lib/python3/dist-packages/cobra/core/gene.py
/usr/lib/python3/dist-packages/cobra/core/group.py
/usr/lib/python3/dist-packages/cobra/core/__init__.py
/usr/lib/python3/dist-packages/cobra/core/metabolite.py
/usr/lib/python3/dist-packages/cobra/core/model.py
/usr/lib/python3/dist-packages/cobra/core/object.py
/usr/lib/python3/dist-packages/cobra/core/reaction.py
/usr/lib/python3/dist-packages/cobra/core/singleton.py
/usr/lib/python3/dist-packages/cobra/core/solution.py
/usr/lib/python3/dist-packages/cobra/core/species.py
/usr/lib/python3/dist-packages/cobra/data/iJO1366.xml.gz
/usr/lib/python3/dist-packages/cobra/data/__init__.py
/usr/lib/python3/dist-packages/cobra/data/mini_cobra.xml
/usr/lib/python3/dist-packages/cobra/data/mini.json
/usr/lib/python3/dist-packages/cobra/data/mini.mat
/usr/lib/python3/dist-packages/cobra/data/mini.yml
/usr/lib/python3/dist-packages/cobra/data/salmonella.xml.gz
/usr/lib/python3/dist-packages/cobra/data/textbook.xml.gz
/usr/lib/python3/dist-packages/cobra/exceptions.py
/usr/lib/python3/dist-packages/cobra/flux_analysis/deletion.py
/usr/lib/python3/dist-packages/cobra/flux_analysis/fastcc.py
/usr/lib/python3/dist-packages/cobra/flux_analysis/gapfilling.py
/usr/lib/python3/dist-packages/cobra/flux_analysis/geometric.py
/usr/lib/python3/dist-packages/cobra/flux_analysis/helpers.py
/usr/lib/python3/dist-packages/cobra/flux_analysis/__init__.py
/usr/lib/python3/dist-packages/cobra/flux_analysis/loopless.py
/usr/lib/python3/dist-packages/cobra/flux_analysis/moma.py
/usr/lib/python3/dist-packages/cobra/flux_analysis/parsimonious.py
/usr/lib/python3/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py
/usr/lib/python3/dist-packages/cobra/flux_analysis/reaction.py
/usr/lib/python3/dist-packages/cobra/flux_analysis/room.py
/usr/lib/python3/dist-packages/cobra/flux_analysis/variability.py
/usr/lib/python3/dist-packages/cobra/__init__.py
/usr/lib/python3/dist-packages/cobra/io/dict.py
/usr/lib/python3/dist-packages/cobra/io/__init__.py
/usr/lib/python3/dist-packages/cobra/io/json.py
/usr/lib/python3/dist-packages/cobra/io/mat.py
/usr/lib/python3/dist-packages/cobra/io/sbml.py
/usr/lib/python3/dist-packages/cobra/io/schema_v1.json
/usr/lib/python3/dist-packages/cobra/io/web/abstract_model_repository.py
/usr/lib/python3/dist-packages/cobra/io/web/bigg_models_repository.py
/usr/lib/python3/dist-packages/cobra/io/web/biomodels_repository.py
/usr/lib/python3/dist-packages/cobra/io/web/cobrapy_repository.py
/usr/lib/python3/dist-packages/cobra/io/web/__init__.py
/usr/lib/python3/dist-packages/cobra/io/web/load.py
/usr/lib/python3/dist-packages/cobra/io/yaml.py
/usr/lib/python3/dist-packages/cobra/manipulation/annotate.py
/usr/lib/python3/dist-packages/cobra/manipulation/delete.py
/usr/lib/python3/dist-packages/cobra/manipulation/__init__.py
/usr/lib/python3/dist-packages/cobra/manipulation/modify.py
/usr/lib/python3/dist-packages/cobra/manipulation/validate.py
/usr/lib/python3/dist-packages/cobra/medium/annotations.py
/usr/lib/python3/dist-packages/cobra/medium/boundary_types.py
/usr/lib/python3/dist-packages/cobra/medium/__init__.py
/usr/lib/python3/dist-packages/cobra/medium/minimal_medium.py
/usr/lib/python3/dist-packages/cobra/sampling/achr.py
/usr/lib/python3/dist-packages/cobra/sampling/core.py
/usr/lib/python3/dist-packages/cobra/sampling/hr_sampler.py
/usr/lib/python3/dist-packages/cobra/sampling/__init__.py
/usr/lib/python3/dist-packages/cobra/sampling/optgp.py
/usr/lib/python3/dist-packages/cobra/sampling/sampling.py
/usr/lib/python3/dist-packages/cobra/summary/__init__.py
/usr/lib/python3/dist-packages/cobra/summary/metabolite_summary.py
/usr/lib/python3/dist-packages/cobra/summary/model_summary.py
/usr/lib/python3/dist-packages/cobra/summary/reaction_summary.py
/usr/lib/python3/dist-packages/cobra/summary/summary.py
/usr/lib/python3/dist-packages/cobra/test/data
/usr/lib/python3/dist-packages/cobra/util/array.py
/usr/lib/python3/dist-packages/cobra/util/context.py
/usr/lib/python3/dist-packages/cobra/util/__init__.py
/usr/lib/python3/dist-packages/cobra/util/process_pool.py
/usr/lib/python3/dist-packages/cobra/util/solver.py
/usr/lib/python3/dist-packages/cobra/util/util.py
/usr/share/doc/python3-cobra/changelog.Debian.gz
/usr/share/doc/python3-cobra/copyright
/usr/share/doc/python3-cobra/README.rst.gz
/usr/share/lintian/overrides/python3-cobra

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Versions, suites, and repositories

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Checksums and observation dates

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

Catalog record completeness

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5, Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Sources and provenance

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 12 (Bookworm) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Observed SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Result: match verified
Debian 12 (Bookworm) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Observed SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Result: match verified