Debian 12 (Bookworm) native package

python3-skbio

Python3 data structures, algorithms, educational resources for bioinformatic

Packages / Debian 12 (Bookworm) / python / python3-skbio

[Source: python-skbio]

Package: python3-skbio (0.5.8-4)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [github.com]

Similar packages:

[python-skbio-doc]
Data structures, algorithms, educational resources for bioinformatics (docs)

Python3 data structures, algorithms, educational resources for bioinformatic

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sug: [python-skbio-doc] (= 0.5.8-4)
Data structures, algorithms, educational resources for bioinformatics (docs)

Download python3-skbio

Architecture	Package Size	Installed Size	Files
amd64	710 KiB	4.4 MiB	[list of files]
arm64	693 KiB	4.5 MiB	[list of files]

Package file paths (636)

Showing the first 250 sorted package-associated paths. Use file search to locate a specific path.

/usr/lib/python3/dist-packages/scikit_bio-0.5.8.egg-info/dependency_links.txt
/usr/lib/python3/dist-packages/scikit_bio-0.5.8.egg-info/PKG-INFO
/usr/lib/python3/dist-packages/scikit_bio-0.5.8.egg-info/requires.txt
/usr/lib/python3/dist-packages/scikit_bio-0.5.8.egg-info/top_level.txt
/usr/lib/python3/dist-packages/skbio/alignment/_indexing.py
/usr/lib/python3/dist-packages/skbio/alignment/__init__.py
/usr/lib/python3/dist-packages/skbio/alignment/_lib/__init__.py
/usr/lib/python3/dist-packages/skbio/alignment/_pairwise.py
/usr/lib/python3/dist-packages/skbio/alignment/_repr.py
/usr/lib/python3/dist-packages/skbio/alignment/_ssw_wrapper.cpython-311-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/skbio/alignment/_ssw_wrapper.cpython-311-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/skbio/alignment/_tabular_msa.py
/usr/lib/python3/dist-packages/skbio/alignment/tests/__init__.py
/usr/lib/python3/dist-packages/skbio/alignment/tests/test_pairwise.py
/usr/lib/python3/dist-packages/skbio/alignment/tests/test_ssw.py
/usr/lib/python3/dist-packages/skbio/alignment/tests/test_tabular_msa.py
/usr/lib/python3/dist-packages/skbio/_base.py
/usr/lib/python3/dist-packages/skbio/diversity/alpha/_ace.py
/usr/lib/python3/dist-packages/skbio/diversity/alpha/_base.py
/usr/lib/python3/dist-packages/skbio/diversity/alpha/_chao1.py
/usr/lib/python3/dist-packages/skbio/diversity/alpha/_faith_pd.py
/usr/lib/python3/dist-packages/skbio/diversity/alpha/_gini.py
/usr/lib/python3/dist-packages/skbio/diversity/alpha/__init__.py
/usr/lib/python3/dist-packages/skbio/diversity/alpha/_lladser.py
/usr/lib/python3/dist-packages/skbio/diversity/alpha/tests/data/qiime-191-tt/faith-pd.txt
/usr/lib/python3/dist-packages/skbio/diversity/alpha/tests/data/qiime-191-tt/otu-table.tsv
/usr/lib/python3/dist-packages/skbio/diversity/alpha/tests/data/qiime-191-tt/README.md
/usr/lib/python3/dist-packages/skbio/diversity/alpha/tests/data/qiime-191-tt/tree.nwk
/usr/lib/python3/dist-packages/skbio/diversity/alpha/tests/__init__.py
/usr/lib/python3/dist-packages/skbio/diversity/alpha/tests/test_ace.py
/usr/lib/python3/dist-packages/skbio/diversity/alpha/tests/test_base.py
/usr/lib/python3/dist-packages/skbio/diversity/alpha/tests/test_chao1.py
/usr/lib/python3/dist-packages/skbio/diversity/alpha/tests/test_faith_pd.py
/usr/lib/python3/dist-packages/skbio/diversity/alpha/tests/test_gini.py
/usr/lib/python3/dist-packages/skbio/diversity/alpha/tests/test_lladser.py
/usr/lib/python3/dist-packages/skbio/diversity/beta/__init__.py
/usr/lib/python3/dist-packages/skbio/diversity/beta/tests/data/qiime-191-tt/otu-table.tsv
/usr/lib/python3/dist-packages/skbio/diversity/beta/tests/data/qiime-191-tt/README.md
/usr/lib/python3/dist-packages/skbio/diversity/beta/tests/data/qiime-191-tt/tree.nwk
/usr/lib/python3/dist-packages/skbio/diversity/beta/tests/data/qiime-191-tt/unweighted_unifrac_dm.txt
/usr/lib/python3/dist-packages/skbio/diversity/beta/tests/data/qiime-191-tt/weighted_normalized_unifrac_dm.txt
/usr/lib/python3/dist-packages/skbio/diversity/beta/tests/data/qiime-191-tt/weighted_unifrac_dm.txt
/usr/lib/python3/dist-packages/skbio/diversity/beta/tests/__init__.py
/usr/lib/python3/dist-packages/skbio/diversity/beta/tests/test_unifrac.py
/usr/lib/python3/dist-packages/skbio/diversity/beta/_unifrac.py
/usr/lib/python3/dist-packages/skbio/diversity/_block.py
/usr/lib/python3/dist-packages/skbio/diversity/_driver.py
/usr/lib/python3/dist-packages/skbio/diversity/__init__.py
/usr/lib/python3/dist-packages/skbio/diversity/_phylogenetic.cpython-311-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/skbio/diversity/_phylogenetic.cpython-311-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/skbio/diversity/tests/__init__.py
/usr/lib/python3/dist-packages/skbio/diversity/tests/test_block.py
/usr/lib/python3/dist-packages/skbio/diversity/tests/test_driver.py
/usr/lib/python3/dist-packages/skbio/diversity/tests/test_util.py
/usr/lib/python3/dist-packages/skbio/diversity/_util.py
/usr/lib/python3/dist-packages/skbio/__init__.py
/usr/lib/python3/dist-packages/skbio/io/_exception.py
/usr/lib/python3/dist-packages/skbio/io/_fileobject.py
/usr/lib/python3/dist-packages/skbio/io/format/_base.py
/usr/lib/python3/dist-packages/skbio/io/format/binary_dm.py
/usr/lib/python3/dist-packages/skbio/io/format/blast6.py
/usr/lib/python3/dist-packages/skbio/io/format/blast7.py
/usr/lib/python3/dist-packages/skbio/io/format/_blast.py
/usr/lib/python3/dist-packages/skbio/io/format/clustal.py
/usr/lib/python3/dist-packages/skbio/io/format/embl.py
/usr/lib/python3/dist-packages/skbio/io/format/emptyfile.py
/usr/lib/python3/dist-packages/skbio/io/format/fasta.py
/usr/lib/python3/dist-packages/skbio/io/format/fastq.py
/usr/lib/python3/dist-packages/skbio/io/format/genbank.py
/usr/lib/python3/dist-packages/skbio/io/format/gff3.py
/usr/lib/python3/dist-packages/skbio/io/format/__init__.py
/usr/lib/python3/dist-packages/skbio/io/format/lsmat.py
/usr/lib/python3/dist-packages/skbio/io/format/newick.py
/usr/lib/python3/dist-packages/skbio/io/format/ordination.py
/usr/lib/python3/dist-packages/skbio/io/format/phylip.py
/usr/lib/python3/dist-packages/skbio/io/format/qseq.py
/usr/lib/python3/dist-packages/skbio/io/format/_sequence_feature_vocabulary.py
/usr/lib/python3/dist-packages/skbio/io/format/stockholm.py
/usr/lib/python3/dist-packages/skbio/io/format/taxdump.py
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/blast6_custom_minimal
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/usr/lib/python3/dist-packages/skbio/io/format/tests/data/blast7_invalid_differing_fields
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/usr/lib/python3/dist-packages/skbio/io/format/tests/data/blast7_invalid_for_sniffer_2
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/blast7_invalid_gibberish
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/blast7_invalid_no_data
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/blast7_invalid_too_many_columns
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/blast7_invalid_unrecognized_field
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/embl_constructed
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/embl_feature_level_record
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/embl_feature_level_record_no_FT
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/embl_multi_records
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/embl_single_record
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/embl_single_record_lower
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/embl_single_record_simple
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/embl_single_record_upper
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/embl_uniprot_record
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/embl_w_beginning_whitespace
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/usr/lib/python3/dist-packages/skbio/io/format/tests/data/error_diff_ids.fastq
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/error_double_qual.fastq
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/error_double_seq.fastq
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/error_long_qual.fastq
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/error_no_qual.fastq
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/error_qual_del.fastq
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/error_qual_escape.fastq
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/error_qual_null.fastq
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/error_qual_space.fastq
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/error_qual_tab.fastq
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/error_qual_unit_sep.fastq
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/error_qual_vtab.fastq
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/error_short_qual.fastq
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/usr/lib/python3/dist-packages/skbio/io/format/tests/data/error_trunc_in_title.fastq
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/fasta_10_seqs
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/usr/lib/python3/dist-packages/skbio/io/format/tests/data/fasta_3_seqs_non_defaults
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/fasta_5_blanks_start_of_file
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/usr/lib/python3/dist-packages/skbio/io/format/tests/data/illumina_full_range_as_illumina.fastq
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/illumina_full_range_as_sanger.fastq
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/illumina_full_range_original_illumina.fastq
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/legacy9_and_blast7_default
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/legacy9_invalid_differing_fields
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/legacy9_invalid_too_many_columns
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/legacy9_mixed_nans
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/legacy9_multi_line
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/legacy9_single_line
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/longreads_as_illumina.fastq
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/longreads_as_sanger.fastq
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/longreads_original_sanger.fastq
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/misc_dna_as_illumina.fastq
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/misc_dna_as_sanger.fastq
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/misc_dna_original_sanger.fastq
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/misc_rna_as_illumina.fastq
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/misc_rna_as_sanger.fastq
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/misc_rna_original_sanger.fastq
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/ordination_error1
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/ordination_error10
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/ordination_error11
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/ordination_error12
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/ordination_error13
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/ordination_error14
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/ordination_error15

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Use this package

OpenFactory can boot this operating system in a browser VM, or start a build that includes the native package name from this record.

Try Debian 12 (Bookworm) in the browser Build an image that includes python3-skbio

Versions, suites, and repositories

Each row is recorded package-index metadata for one version, architecture, suite, and repository. Names, URLs, and sizes are source-reported; a link is a potentially mutable retrieval location, not an OpenFactory redistribution claim or proof that OpenFactory retained the artifact bytes.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
0.5.8-4	bookworm / main	amd64	Debian 12 · main · amd64	710 KiB	4.4 MiB	pool/main/p/python-skbio/python3-skbio_0.5.8-4_amd64.deb
0.5.8-4	bookworm / main	arm64	Debian 12 · main · arm64	693 KiB	4.5 MiB	pool/main/p/python-skbio/python3-skbio_0.5.8-4_arm64.deb

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Checksums and observation dates

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

0.5.8-4 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 137c671cb35dbef36c6b2fb529bbd95aef16d59d4b2f8fde6edb06c5e7882bef

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '137c671cb35dbef36c6b2fb529bbd95aef16d59d4b2f8fde6edb06c5e7882bef' 'python3-skbio_0.5.8-4_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

0.5.8-4 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 1f3d0aa1ba5b79131a423f69da9e43204862e94b40b400df5db912cb0037e758

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '1f3d0aa1ba5b79131a423f69da9e43204862e94b40b400df5db912cb0037e758' 'python3-skbio_0.5.8-4_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00

Catalog record completeness

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5, Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Sources and provenance

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 12 (Bookworm) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Observed SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Result: match verified
Debian 12 (Bookworm) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Observed SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Result: match verified