Debian 12 (Bookworm) native package

r-bioc-biostrings

GNU R string objects representing biological sequences

Packages / Debian 12 (Bookworm) / gnu-r / r-bioc-biostrings

Package: r-bioc-biostrings (2.66.0-1)

Maintainers:

Debian R Packages Maintainers

External Resources:

Homepage: [bioconductor.org]

GNU R string objects representing biological sequences

Other Packages Related to r-bioc-biostrings:

dep: [r-base-core] (>= 4.2.2.20221110-1)
GNU R core of statistical computation and graphics system
dep: r-api-4.0
Package not available
dep: r-api-bioc-3.16
Package not available
dep: [r-bioc-biocgenerics] (>= 0.37.0)
generic functions for Bioconductor
dep: [r-bioc-s4vectors] (>= 0.27.12)
BioConductor S4 implementation of vectors and lists
dep: [r-bioc-iranges] (>= 2.31.2)
GNU R low-level containers for storing sets of integer ranges
dep: [r-bioc-xvector] (>= 0.37.1)
BioConductor representation and manpulation of external sequences
dep: [r-bioc-genomeinfodb]
BioConductor utilities for manipulating chromosome identifiers
dep: [r-cran-crayon]
GNU R colored terminal output
dep: [libc6] (>= 2.14)
GNU C Library: Shared libraries

sug: [r-bioc-bsgenome] (>= 1.13.14)
BioConductor infrastructure for Biostrings-based genome data packages
sug: [r-bioc-genomicfeatures] (>= 1.3.14)
GNU R tools for making and manipulating transcript centric annotations
sug: [r-bioc-affy] (>= 1.41.3)
BioConductor methods for Affymetrix Oligonucleotide Arrays
sug: [r-cran-runit]
GNU R package providing unit testing framework

Download r-bioc-biostrings

Architecture	Package Size	Installed Size	Files
amd64	13 MiB	15 MiB	[list of files]
arm64	13 MiB	15 MiB	[list of files]

Package file paths (81)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/lib/R/site-library/Biostrings/data/BLOSUM100.rda
/usr/lib/R/site-library/Biostrings/data/BLOSUM45.rda
/usr/lib/R/site-library/Biostrings/data/BLOSUM50.rda
/usr/lib/R/site-library/Biostrings/data/BLOSUM62.rda
/usr/lib/R/site-library/Biostrings/data/BLOSUM80.rda
/usr/lib/R/site-library/Biostrings/data/HNF4alpha.rda
/usr/lib/R/site-library/Biostrings/data/PAM120.rda
/usr/lib/R/site-library/Biostrings/data/PAM250.rda
/usr/lib/R/site-library/Biostrings/data/PAM30.rda
/usr/lib/R/site-library/Biostrings/data/PAM40.rda
/usr/lib/R/site-library/Biostrings/data/PAM70.rda
/usr/lib/R/site-library/Biostrings/data/phiX174Phage.rda
/usr/lib/R/site-library/Biostrings/data/srPhiX174.rda
/usr/lib/R/site-library/Biostrings/data/yeastSEQCHR1.rda
/usr/lib/R/site-library/Biostrings/DESCRIPTION
/usr/lib/R/site-library/Biostrings/doc/Biostrings2Classes.pdf
/usr/lib/R/site-library/Biostrings/doc/Biostrings2Classes.R
/usr/lib/R/site-library/Biostrings/doc/Biostrings2Classes.Rnw
/usr/lib/R/site-library/Biostrings/doc/BiostringsQuickOverview.pdf
/usr/lib/R/site-library/Biostrings/doc/BiostringsQuickOverview.Rnw
/usr/lib/R/site-library/Biostrings/doc/index.html
/usr/lib/R/site-library/Biostrings/doc/matchprobes.pdf
/usr/lib/R/site-library/Biostrings/doc/matchprobes.R
/usr/lib/R/site-library/Biostrings/doc/matchprobes.Rnw
/usr/lib/R/site-library/Biostrings/doc/MultipleAlignments.pdf
/usr/lib/R/site-library/Biostrings/doc/MultipleAlignments.R
/usr/lib/R/site-library/Biostrings/doc/MultipleAlignments.Rnw
/usr/lib/R/site-library/Biostrings/doc/PairwiseAlignments.pdf
/usr/lib/R/site-library/Biostrings/doc/PairwiseAlignments.R
/usr/lib/R/site-library/Biostrings/doc/PairwiseAlignments.Rnw
/usr/lib/R/site-library/Biostrings/extdata/dm3_upstream2000.fa.gz
/usr/lib/R/site-library/Biostrings/extdata/fastaEx.fa
/usr/lib/R/site-library/Biostrings/extdata/hg18chr8_gap.txt
/usr/lib/R/site-library/Biostrings/extdata/hg18chrY_gap.txt
/usr/lib/R/site-library/Biostrings/extdata/msx2_mRNA.aln
/usr/lib/R/site-library/Biostrings/extdata/Phylip.txt
/usr/lib/R/site-library/Biostrings/extdata/README
/usr/lib/R/site-library/Biostrings/extdata/s_1_sequence.txt
/usr/lib/R/site-library/Biostrings/extdata/Sc.fa
/usr/lib/R/site-library/Biostrings/extdata/someORF.fa
/usr/lib/R/site-library/Biostrings/extdata/someORF.fa.gz
/usr/lib/R/site-library/Biostrings/extdata/Sp.fa
/usr/lib/R/site-library/Biostrings/help/aliases.rds
/usr/lib/R/site-library/Biostrings/help/AnIndex
/usr/lib/R/site-library/Biostrings/help/Biostrings.rdb
/usr/lib/R/site-library/Biostrings/help/Biostrings.rdx
/usr/lib/R/site-library/Biostrings/help/paths.rds
/usr/lib/R/site-library/Biostrings/html/00Index.html
/usr/lib/R/site-library/Biostrings/html/R.css
/usr/lib/R/site-library/Biostrings/include/Biostrings_defines.h
/usr/lib/R/site-library/Biostrings/include/Biostrings_interface.h
/usr/lib/R/site-library/Biostrings/include/_Biostrings_stubs.c
/usr/lib/R/site-library/Biostrings/INDEX
/usr/lib/R/site-library/Biostrings/libs/Biostrings.so
/usr/lib/R/site-library/Biostrings/Meta/data.rds
/usr/lib/R/site-library/Biostrings/Meta/features.rds
/usr/lib/R/site-library/Biostrings/Meta/hsearch.rds
/usr/lib/R/site-library/Biostrings/Meta/links.rds
/usr/lib/R/site-library/Biostrings/Meta/nsInfo.rds
/usr/lib/R/site-library/Biostrings/Meta/package.rds
/usr/lib/R/site-library/Biostrings/Meta/Rd.rds
/usr/lib/R/site-library/Biostrings/Meta/vignette.rds
/usr/lib/R/site-library/Biostrings/NAMESPACE
/usr/lib/R/site-library/Biostrings/NEWS
/usr/lib/R/site-library/Biostrings/R/Biostrings
/usr/lib/R/site-library/Biostrings/R/Biostrings.rdb
/usr/lib/R/site-library/Biostrings/R/Biostrings.rdx
/usr/lib/R/site-library/Biostrings/unitTests/test_findPalindromes.R
/usr/lib/R/site-library/Biostrings/unitTests/test_matchDNAPattern.R.FIXME
/usr/lib/R/site-library/Biostrings/unitTests/test_matchPDict.R
/usr/lib/R/site-library/Biostrings/unitTests/test_MultipleAlignment.R
/usr/lib/R/site-library/Biostrings/unitTests/test_pairwiseAlignment.R
/usr/lib/R/site-library/Biostrings/unitTests/test_seqinfo-methods.R
/usr/lib/R/site-library/Biostrings/unitTests/test_twoWayAlphabetFrequency.R
/usr/lib/R/site-library/Biostrings/unitTests/test_XString.R
/usr/lib/R/site-library/Biostrings/unitTests/test_XStringSet-io.R
/usr/lib/R/site-library/Biostrings/unitTests/test_XStringSetList.R
/usr/lib/R/site-library/Biostrings/unitTests/test_XStringSet.R
/usr/share/doc/r-bioc-biostrings/changelog.Debian.gz
/usr/share/doc/r-bioc-biostrings/changelog.gz
/usr/share/doc/r-bioc-biostrings/copyright

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Use this package

OpenFactory can boot this operating system in a browser VM, or start a build that includes the native package name from this record.

Try Debian 12 (Bookworm) in the browser Build an image that includes r-bioc-biostrings

Versions, suites, and repositories

Each row is recorded package-index metadata for one version, architecture, suite, and repository. Names, URLs, and sizes are source-reported; a link is a potentially mutable retrieval location, not an OpenFactory redistribution claim or proof that OpenFactory retained the artifact bytes.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
2.66.0-1	bookworm / main	amd64	Debian 12 · main · amd64	13 MiB	15 MiB	pool/main/r/r-bioc-biostrings/r-bioc-biostrings_2.66.0-1_amd64.deb
2.66.0-1	bookworm / main	arm64	Debian 12 · main · arm64	13 MiB	15 MiB	pool/main/r/r-bioc-biostrings/r-bioc-biostrings_2.66.0-1_arm64.deb

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Checksums and observation dates

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

2.66.0-1 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 94ba289411284aaf42501357cac6f50b559d23d5f9c1300fa1e4f2e91cd4fa12

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '94ba289411284aaf42501357cac6f50b559d23d5f9c1300fa1e4f2e91cd4fa12' 'r-bioc-biostrings_2.66.0-1_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

2.66.0-1 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 95e32bfda9fc5a4b654e7db050c010cd2ef462642a584e6fb538fb2c1924f272

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '95e32bfda9fc5a4b654e7db050c010cd2ef462642a584e6fb538fb2c1924f272' 'r-bioc-biostrings_2.66.0-1_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00

Catalog record completeness

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5, Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Sources and provenance

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 12 (Bookworm) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Observed SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Result: match verified
Debian 12 (Bookworm) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Observed SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Result: match verified