Packages / Debian 12 (Bookworm) / gnu-r / r-bioc-genomicfeatures
Package: r-bioc-genomicfeatures (1.50.4+dfsg-1)
Maintainers:
External Resources:
Homepage: [bioconductor.org]
GNU R tools for making and manipulating transcript centric annotations
Other Packages Related to r-bioc-genomicfeatures:
dep: [r-base-core] (>= 4.2.2.20221110-2)
GNU R core of statistical computation and graphics system
dep: r-api-4.0
Package not available
dep: r-api-bioc-3.16
Package not available
dep: [r-bioc-biocgenerics] (>= 0.1.0)
generic functions for Bioconductor
dep: [r-bioc-s4vectors] (>= 0.17.29)
BioConductor S4 implementation of vectors and lists
dep: [r-bioc-iranges] (>= 2.13.23)
GNU R low-level containers for storing sets of integer ranges
dep: [r-bioc-genomeinfodb] (>= 1.34.7)
BioConductor utilities for manipulating chromosome identifiers
dep: [r-bioc-genomicranges] (>= 1.31.17)
BioConductor representation and manipulation of genomic intervals
dep: [r-bioc-annotationdbi] (>= 1.41.4)
GNU R Annotation Database Interface for BioConductor
dep: [r-cran-dbi]
GNU R package providing a generic database interface
dep: [r-cran-rsqlite] (>= 2.0)
Database Interface R driver for SQLite
dep: [r-cran-rcurl]
GNU R General network (HTTP/FTP/...) client interface
dep: [r-bioc-xvector] (>= 0.19.7)
BioConductor representation and manpulation of external sequences
dep: [r-bioc-biostrings] (>= 2.47.6)
GNU R string objects representing biological sequences
dep: [r-bioc-biocio]
standard input and output for Bioconductor packages
dep: [r-bioc-rtracklayer] (>= 1.51.5)
GNU R interface to genome browsers and their annotation tracks
dep: [r-bioc-biomart] (>= 2.17.1)
GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)
dep: [r-bioc-biobase] (>= 2.15.1)
base functions for Bioconductor
sug: [r-bioc-org.hs.eg.db]
genome-wide annotation for Human
sug: [r-bioc-bsgenome]
BioConductor infrastructure for Biostrings-based genome data packages
sug: [r-bioc-rsamtools]
GNU R binary alignment (BAM), variant call (BCF), or tabix file import
sug: [r-bioc-genomicalignments] (>= 1.15.7)
BioConductor representation and manipulation of short genomic alignments
sug: [r-bioc-ensembldb]
GNU R utilities to create and use an Ensembl based annotation database
sug: [r-bioc-annotationfilter]
facilities for filtering Bioconductor annotation resources
sug: [r-cran-runit]
GNU R package providing unit testing framework
sug: [r-bioc-biocstyle]
standard styles for vignettes and other Bioconductor documents
sug: [r-cran-knitr]
GNU R package for dynamic report generation using Literate Programming
sug: [r-cran-markdown]
GNU R package providing R bindings to the Sundown Markdown rendering library
Download r-bioc-genomicfeatures
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| all | 1.6 MiB | 4.4 MiB | [list of files] |
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Field source: Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00