Debian 12 (Bookworm) native package

r-bioc-rtracklayer

GNU R interface to genome browsers and their annotation tracks

Packages / Debian 12 (Bookworm) / gnu-r / r-bioc-rtracklayer

Package: r-bioc-rtracklayer (1.58.0-1)

Maintainers:

Debian R Packages Maintainers

External Resources:

Homepage: [bioconductor.org]

GNU R interface to genome browsers and their annotation tracks

Other Packages Related to r-bioc-rtracklayer:

dep: [r-base-core] (>= 4.2.2.20221110-1)
GNU R core of statistical computation and graphics system
dep: r-api-4.0
Package not available
dep: r-api-bioc-3.16
Package not available
dep: [r-bioc-genomicranges] (>= 1.37.2)
BioConductor representation and manipulation of genomic intervals
dep: [r-cran-xml] (>= 1.98-0)
GNU R package for XML parsing and generation
dep: [r-bioc-biocgenerics] (>= 0.35.3)
generic functions for Bioconductor
dep: [r-bioc-s4vectors] (>= 0.23.18)
BioConductor S4 implementation of vectors and lists
dep: [r-bioc-iranges] (>= 2.13.13)
GNU R low-level containers for storing sets of integer ranges
dep: [r-bioc-xvector] (>= 0.19.7)
BioConductor representation and manpulation of external sequences
dep: [r-bioc-genomeinfodb] (>= 1.15.2)
BioConductor utilities for manipulating chromosome identifiers
dep: [r-bioc-biostrings] (>= 2.47.6)
GNU R string objects representing biological sequences
dep: [r-bioc-zlibbioc]
(Virtual) zlibbioc Bioconductor package
dep: [r-cran-rcurl] (>= 1.4-2)
GNU R General network (HTTP/FTP/...) client interface
dep: [r-bioc-rsamtools] (>= 1.31.2)
GNU R binary alignment (BAM), variant call (BCF), or tabix file import
dep: [r-bioc-genomicalignments] (>= 1.15.6)
BioConductor representation and manipulation of short genomic alignments
dep: [r-bioc-biocio]
standard input and output for Bioconductor packages
dep: [r-cran-restfulr] (>= 0.0.13)
GNU R interface to RESTful web wervices
dep: [libc6] (>= 2.34)
GNU C Library: Shared libraries
dep: [zlib1g] (>= 1:1.1.4)
compression library - runtime

sug: [r-bioc-bsgenome] (>= 1.33.4)
BioConductor infrastructure for Biostrings-based genome data packages
sug: [r-bioc-genefilter]
methods for filtering genes from microarray experiments
sug: [r-bioc-limma]
linear models for microarray data
sug: [r-bioc-org.hs.eg.db]
genome-wide annotation for Human
sug: [r-bioc-genomicfeatures]
GNU R tools for making and manipulating transcript centric annotations
sug: [r-cran-runit]
GNU R package providing unit testing framework

Download r-bioc-rtracklayer

Architecture	Package Size	Installed Size	Files
amd64	4.9 MiB	6.5 MiB	[list of files]
arm64	4.9 MiB	6.6 MiB	[list of files]

Paketdateipfade (82)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/lib/R/site-library/rtracklayer/CITATION
/usr/lib/R/site-library/rtracklayer/data/cpneTrack.rda
/usr/lib/R/site-library/rtracklayer/data/targets.rda
/usr/lib/R/site-library/rtracklayer/demo/targets.R
/usr/lib/R/site-library/rtracklayer/DESCRIPTION
/usr/lib/R/site-library/rtracklayer/doc/index.html
/usr/lib/R/site-library/rtracklayer/doc/rtracklayer.pdf
/usr/lib/R/site-library/rtracklayer/doc/rtracklayer.R
/usr/lib/R/site-library/rtracklayer/doc/rtracklayer.Rnw
/usr/lib/R/site-library/rtracklayer/extdata/demo.narrowPeak.gz
/usr/lib/R/site-library/rtracklayer/help/aliases.rds
/usr/lib/R/site-library/rtracklayer/help/AnIndex
/usr/lib/R/site-library/rtracklayer/help/paths.rds
/usr/lib/R/site-library/rtracklayer/help/rtracklayer.rdb
/usr/lib/R/site-library/rtracklayer/help/rtracklayer.rdx
/usr/lib/R/site-library/rtracklayer/html/00Index.html
/usr/lib/R/site-library/rtracklayer/html/R.css
/usr/lib/R/site-library/rtracklayer/INDEX
/usr/lib/R/site-library/rtracklayer/libs/rtracklayer.so
/usr/lib/R/site-library/rtracklayer/Meta/data.rds
/usr/lib/R/site-library/rtracklayer/Meta/demo.rds
/usr/lib/R/site-library/rtracklayer/Meta/features.rds
/usr/lib/R/site-library/rtracklayer/Meta/hsearch.rds
/usr/lib/R/site-library/rtracklayer/Meta/links.rds
/usr/lib/R/site-library/rtracklayer/Meta/nsInfo.rds
/usr/lib/R/site-library/rtracklayer/Meta/package.rds
/usr/lib/R/site-library/rtracklayer/Meta/Rd.rds
/usr/lib/R/site-library/rtracklayer/Meta/vignette.rds
/usr/lib/R/site-library/rtracklayer/NAMESPACE
/usr/lib/R/site-library/rtracklayer/NEWS
/usr/lib/R/site-library/rtracklayer/notes/design.org
/usr/lib/R/site-library/rtracklayer/notes/requirements.tex
/usr/lib/R/site-library/rtracklayer/notes/use-cases.tex
/usr/lib/R/site-library/rtracklayer/R/rtracklayer
/usr/lib/R/site-library/rtracklayer/R/rtracklayer.rdb
/usr/lib/R/site-library/rtracklayer/R/rtracklayer.rdx
/usr/lib/R/site-library/rtracklayer/scripts/cpneTrack.R
/usr/lib/R/site-library/rtracklayer/scripts/twobit.R
/usr/lib/R/site-library/rtracklayer/tests/bed.bw
/usr/lib/R/site-library/rtracklayer/tests/bed.wig
/usr/lib/R/site-library/rtracklayer/tests/genes.gff3
/usr/lib/R/site-library/rtracklayer/tests/gtf.gff
/usr/lib/R/site-library/rtracklayer/tests/multi.wig
/usr/lib/R/site-library/rtracklayer/tests/quickload/contents.txt
/usr/lib/R/site-library/rtracklayer/tests/quickload/T_species_Oct_2011/annots.xml
/usr/lib/R/site-library/rtracklayer/tests/quickload/T_species_Oct_2011/bedData.bed.gz
/usr/lib/R/site-library/rtracklayer/tests/quickload/T_species_Oct_2011/bedData.bed.gz.tbi
/usr/lib/R/site-library/rtracklayer/tests/quickload/T_species_Oct_2011/bedGraphData.bw
/usr/lib/R/site-library/rtracklayer/tests/quickload/T_species_Oct_2011/mod_chromInfo.txt
/usr/lib/R/site-library/rtracklayer/tests/quickload/T_species_Oct_2011/T_species_Oct_2011.2bit
/usr/lib/R/site-library/rtracklayer/tests/step.wig
/usr/lib/R/site-library/rtracklayer/tests/test.2bit
/usr/lib/R/site-library/rtracklayer/tests/test.bb
/usr/lib/R/site-library/rtracklayer/tests/test.bed
/usr/lib/R/site-library/rtracklayer/tests/test.bed15
/usr/lib/R/site-library/rtracklayer/tests/test.bedGraph
/usr/lib/R/site-library/rtracklayer/tests/test.bedpe
/usr/lib/R/site-library/rtracklayer/tests/test.bw
/usr/lib/R/site-library/rtracklayer/tests/test.gtf
/usr/lib/R/site-library/rtracklayer/tests/test.R
/usr/lib/R/site-library/rtracklayer/tests/test.xmfa
/usr/lib/R/site-library/rtracklayer/tests/trackhub/genomes.txt
/usr/lib/R/site-library/rtracklayer/tests/trackhub/hg19/trackDb.txt
/usr/lib/R/site-library/rtracklayer/tests/trackhub/hg19/wgEncodeUWDukeDnaseGM12878.fdr01peaks.hg19.bb
/usr/lib/R/site-library/rtracklayer/tests/trackhub/hub.txt
/usr/lib/R/site-library/rtracklayer/tests/v1.gff
/usr/lib/R/site-library/rtracklayer/tests/v2.gff
/usr/lib/R/site-library/rtracklayer/tests/v3.gff
/usr/lib/R/site-library/rtracklayer/tests/variableStep.bw
/usr/lib/R/site-library/rtracklayer/tests/variableStep.wig
/usr/lib/R/site-library/rtracklayer/unitTests/test_bb.R
/usr/lib/R/site-library/rtracklayer/unitTests/test_bedGraph.R
/usr/lib/R/site-library/rtracklayer/unitTests/test_bed.R
/usr/lib/R/site-library/rtracklayer/unitTests/test_bw.R
/usr/lib/R/site-library/rtracklayer/unitTests/test_gff.R
/usr/lib/R/site-library/rtracklayer/unitTests/test_trackhub.R
/usr/lib/R/site-library/rtracklayer/unitTests/test_twoBit.R
/usr/lib/R/site-library/rtracklayer/unitTests/test_ucsc.R
/usr/lib/R/site-library/rtracklayer/unitTests/test_wig.R
/usr/share/doc/r-bioc-rtracklayer/changelog.Debian.gz
/usr/share/doc/r-bioc-rtracklayer/copyright
/usr/share/doc/r-bioc-rtracklayer/README.test

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Dieses Paket verwenden

OpenFactory kann dieses Betriebssystem in einer Browser-VM starten oder einen Image-Build mit dem nativen Paketnamen aus diesem Datensatz beginnen.

Debian 12 (Bookworm) im Browser testen Image mit r-bioc-rtracklayer bauen

Versionen, Suiten und Repositories

Jede Zeile ist Paketindex-Metadaten für eine Version, Architektur, Suite und ein Repository. Namen, URLs und Größen stammen aus der Quelle; ein Link ist ein veränderbarer Abrufort, kein Weitergabanspruch von OpenFactory.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
1.58.0-1	bookworm / main	amd64	Debian 12 · main · amd64	4.9 MiB	6.5 MiB	pool/main/r/r-bioc-rtracklayer/r-bioc-rtracklayer_1.58.0-1_amd64.deb
1.58.0-1	bookworm / main	arm64	Debian 12 · main · arm64	4.9 MiB	6.6 MiB	pool/main/r/r-bioc-rtracklayer/r-bioc-rtracklayer_1.58.0-1_arm64.deb

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Prüfsummen und Beobachtungsdaten

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

1.58.0-1 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 2bb5d27b2a47fd9f505fe648dde4d3e45fc6efd9244bf390dee04cf5edf7762a

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '2bb5d27b2a47fd9f505fe648dde4d3e45fc6efd9244bf390dee04cf5edf7762a' 'r-bioc-rtracklayer_1.58.0-1_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

1.58.0-1 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: eb5b9d5fb888061266a5d0dad55fb58a367616f748a5a5537edf6c496fcfadd8

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' 'eb5b9d5fb888061266a5d0dad55fb58a367616f748a5a5537edf6c496fcfadd8' 'r-bioc-rtracklayer_1.58.0-1_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00

Vollständigkeit des Katalogsatzes

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5, Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Quellen und Herkunft

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 12 (Bookworm) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Observed SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Result: match verified
Debian 12 (Bookworm) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Observed SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Result: match verified