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Debian 12 (Bookworm) native package

r-bioc-genomicalignments

BioConductor representation and manipulation of short genomic alignments

Packages / Debian 12 (Bookworm) / gnu-r / r-bioc-genomicalignments

Package: r-bioc-genomicalignments (1.34.0-1)

Maintainers:

Debian R Packages Maintainers

External Resources:

Homepage: [bioconductor.org]

BioConductor representation and manipulation of short genomic alignments

Other Packages Related to r-bioc-genomicalignments:

  • dep: [r-base-core] (>= 4.2.2.20221110-1)

    GNU R core of statistical computation and graphics system

  • dep: r-api-4.0

    Package not available

  • dep: r-api-bioc-3.16

    Package not available

  • dep: [r-bioc-biocgenerics] (>= 0.37.0)

    generic functions for Bioconductor

  • dep: [r-bioc-s4vectors] (>= 0.27.12)

    BioConductor S4 implementation of vectors and lists

  • dep: [r-bioc-iranges] (>= 2.23.9)

    GNU R low-level containers for storing sets of integer ranges

  • dep: [r-bioc-genomeinfodb] (>= 1.13.1)

    BioConductor utilities for manipulating chromosome identifiers

  • dep: [r-bioc-genomicranges] (>= 1.41.5)

    BioConductor representation and manipulation of genomic intervals

  • dep: [r-bioc-summarizedexperiment] (>= 1.9.13)

    BioConductor assay container

  • dep: [r-bioc-biostrings] (>= 2.55.7)

    GNU R string objects representing biological sequences

  • dep: [r-bioc-rsamtools] (>= 1.31.2)

    GNU R binary alignment (BAM), variant call (BCF), or tabix file import

  • dep: [r-bioc-biocparallel]

    BioConductor facilities for parallel evaluation

  • dep: [libc6] (>= 2.4)

    GNU C Library: Shared libraries

  • sug: [r-bioc-shortread]

    GNU R classes and methods for high-throughput short-read sequencing data

  • sug: [r-bioc-rtracklayer]

    GNU R interface to genome browsers and their annotation tracks

  • sug: [r-bioc-bsgenome]

    BioConductor infrastructure for Biostrings-based genome data packages

  • sug: [r-bioc-genomicfeatures]

    GNU R tools for making and manipulating transcript centric annotations

  • sug: [r-bioc-deseq2]

    R package for RNA-Seq Differential Expression Analysis

  • sug: [r-bioc-edger]

    Empirical analysis of digital gene expression data in R

  • sug: [r-cran-runit]

    GNU R package providing unit testing framework

  • sug: [r-bioc-biocstyle]

    standard styles for vignettes and other Bioconductor documents

Download r-bioc-genomicalignments

ArchitecturePackage SizeInstalled SizeFiles
amd642.0 MiB2.8 MiB[list of files]
arm642.0 MiB2.9 MiB[list of files]

Percorsi file del pacchetto (49)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

  • /usr/lib/R/site-library/GenomicAlignments/CITATION
  • /usr/lib/R/site-library/GenomicAlignments/DESCRIPTION
  • /usr/lib/R/site-library/GenomicAlignments/doc/GenomicAlignmentsIntroduction.pdf
  • /usr/lib/R/site-library/GenomicAlignments/doc/GenomicAlignmentsIntroduction.R
  • /usr/lib/R/site-library/GenomicAlignments/doc/GenomicAlignmentsIntroduction.Rnw
  • /usr/lib/R/site-library/GenomicAlignments/doc/index.html
  • /usr/lib/R/site-library/GenomicAlignments/doc/OverlapEncodings.pdf
  • /usr/lib/R/site-library/GenomicAlignments/doc/OverlapEncodings.R
  • /usr/lib/R/site-library/GenomicAlignments/doc/OverlapEncodings.Rnw
  • /usr/lib/R/site-library/GenomicAlignments/doc/summarizeOverlaps.pdf
  • /usr/lib/R/site-library/GenomicAlignments/doc/summarizeOverlaps.R
  • /usr/lib/R/site-library/GenomicAlignments/doc/summarizeOverlaps.Rnw
  • /usr/lib/R/site-library/GenomicAlignments/doc/WorkingWithAlignedNucleotides.pdf
  • /usr/lib/R/site-library/GenomicAlignments/doc/WorkingWithAlignedNucleotides.R
  • /usr/lib/R/site-library/GenomicAlignments/doc/WorkingWithAlignedNucleotides.Rnw
  • /usr/lib/R/site-library/GenomicAlignments/extdata/sm_treated1.bam
  • /usr/lib/R/site-library/GenomicAlignments/extdata/sm_untreated1.bam
  • /usr/lib/R/site-library/GenomicAlignments/help/aliases.rds
  • /usr/lib/R/site-library/GenomicAlignments/help/AnIndex
  • /usr/lib/R/site-library/GenomicAlignments/help/GenomicAlignments.rdb
  • /usr/lib/R/site-library/GenomicAlignments/help/GenomicAlignments.rdx
  • /usr/lib/R/site-library/GenomicAlignments/help/paths.rds
  • /usr/lib/R/site-library/GenomicAlignments/html/00Index.html
  • /usr/lib/R/site-library/GenomicAlignments/html/R.css
  • /usr/lib/R/site-library/GenomicAlignments/INDEX
  • /usr/lib/R/site-library/GenomicAlignments/libs/GenomicAlignments.so
  • /usr/lib/R/site-library/GenomicAlignments/Meta/features.rds
  • /usr/lib/R/site-library/GenomicAlignments/Meta/hsearch.rds
  • /usr/lib/R/site-library/GenomicAlignments/Meta/links.rds
  • /usr/lib/R/site-library/GenomicAlignments/Meta/nsInfo.rds
  • /usr/lib/R/site-library/GenomicAlignments/Meta/package.rds
  • /usr/lib/R/site-library/GenomicAlignments/Meta/Rd.rds
  • /usr/lib/R/site-library/GenomicAlignments/Meta/vignette.rds
  • /usr/lib/R/site-library/GenomicAlignments/NAMESPACE
  • /usr/lib/R/site-library/GenomicAlignments/NEWS
  • /usr/lib/R/site-library/GenomicAlignments/R/GenomicAlignments
  • /usr/lib/R/site-library/GenomicAlignments/R/GenomicAlignments.rdb
  • /usr/lib/R/site-library/GenomicAlignments/R/GenomicAlignments.rdx
  • /usr/lib/R/site-library/GenomicAlignments/unitTests/test_cigar-utils.R
  • /usr/lib/R/site-library/GenomicAlignments/unitTests/test_coordinate-mapping-methods.R
  • /usr/lib/R/site-library/GenomicAlignments/unitTests/test_findSpliceOverlaps-methods.R
  • /usr/lib/R/site-library/GenomicAlignments/unitTests/test_GAlignments-class.R
  • /usr/lib/R/site-library/GenomicAlignments/unitTests/test_GAlignmentsList-class.R
  • /usr/lib/R/site-library/GenomicAlignments/unitTests/test_intra-range-methods.R
  • /usr/lib/R/site-library/GenomicAlignments/unitTests/test_readGAlignmentPairs.R
  • /usr/lib/R/site-library/GenomicAlignments/unitTests/test_readGAlignments.R
  • /usr/lib/R/site-library/GenomicAlignments/unitTests/test_summarizeOverlaps-methods.R
  • /usr/share/doc/r-bioc-genomicalignments/changelog.Debian.gz
  • /usr/share/doc/r-bioc-genomicalignments/copyright

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

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Versioni, suite e repository

Ogni riga è metadato dell'indice pacchetti per una versione, architettura, suite e repository. Nomi, URL e dimensioni arrivano dalla fonte; un link è un punto di recupero mutabile, non una redistribuzione OpenFactory.

VersionReleaseArchitectureRepositoryPackage sizeInstalled sizePublisher repository artifact
1.34.0-1bookworm / mainamd64Debian 12 · main · amd642.0 MiB2.8 MiBpool/main/r/r-bioc-genomicalignments/r-bioc-genomicalignments_1.34.0-1_amd64.deb
1.34.0-1bookworm / mainarm64Debian 12 · main · arm642.0 MiB2.9 MiBpool/main/r/r-bioc-genomicalignments/r-bioc-genomicalignments_1.34.0-1_arm64.deb

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Checksum e date di osservazione

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

1.34.0-1 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: c3827d53308374a9042d77104d646fe580600a8ad8a4bb158b99361605af0277

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' 'c3827d53308374a9042d77104d646fe580600a8ad8a4bb158b99361605af0277' 'r-bioc-genomicalignments_1.34.0-1_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

1.34.0-1 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 1ad539b41457ebaf0c67e71c6abf9bfad8f96ca145b037e01efeae78290dbf10

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' '1ad539b41457ebaf0c67e71c6abf9bfad8f96ca145b037e01efeae78290dbf10' 'r-bioc-genomicalignments_1.34.0-1_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00

Completezza del record

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description
25/25
Artifact path and source digest
25/25
Dependency metadata
15/15
Package-file index
15/15
Homepage
5/5
License text
0/5
Source package or maintainer
10/10

Recorded total: 95/100

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5, Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Fonti e provenienza

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

  • Debian 12 (Bookworm) main amd64Sep 1, 2026

    Authoritative source; repository metadata signature verified, revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: main/binary-amd64/Packages.xz
    Expected SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
    Observed SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
    Result: match verified

  • Debian 12 (Bookworm) main arm64Sep 1, 2026

    Authoritative source; repository metadata signature verified, revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: main/binary-arm64/Packages.xz
    Expected SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
    Observed SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
    Result: match verified

r-bioc-genomicalignments Package for Debian 12 (Bookworm) | OpenFactory