Linux workstation

Debian 12 (Bookworm) native package

r-bioc-snpstats

BioConductor SnpMatrix and XSnpMatrix classes and methods

Packages / Debian 12 (Bookworm) / gnu-r / r-bioc-snpstats

Package: r-bioc-snpstats (1.48.0+dfsg-1)

Maintainers:

Debian R Packages Maintainers

External Resources:

Homepage: [bioconductor.org]

BioConductor SnpMatrix and XSnpMatrix classes and methods

Other Packages Related to r-bioc-snpstats:

  • dep: [r-base-core] (>= 4.2.2.20221110-1)

    GNU R core of statistical computation and graphics system

  • dep: r-api-4.0

    Package not available

  • dep: r-api-bioc-3.16

    Package not available

  • dep: [r-cran-survival]

    GNU R package for survival analysis

  • dep: [r-cran-matrix]

    GNU R package of classes for dense and sparse matrices

  • dep: [r-bioc-biocgenerics]

    generic functions for Bioconductor

  • dep: [r-bioc-zlibbioc]

    (Virtual) zlibbioc Bioconductor package

  • dep: [libc6] (>= 2.14)

    GNU C Library: Shared libraries

  • dep: [zlib1g] (>= 1:1.1.4)

    compression library - runtime

Download r-bioc-snpstats

ArchitecturePackage SizeInstalled SizeFiles
amd646.9 MiB8.3 MiB[list of files]
arm646.9 MiB8.3 MiB[list of files]

Package file paths (72)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

  • /usr/lib/R/site-library/snpStats/data/datalist
  • /usr/lib/R/site-library/snpStats/data/families.RData
  • /usr/lib/R/site-library/snpStats/data/for.exercise.RData
  • /usr/lib/R/site-library/snpStats/data/ld.example.RData
  • /usr/lib/R/site-library/snpStats/data/testdata.RData
  • /usr/lib/R/site-library/snpStats/DESCRIPTION
  • /usr/lib/R/site-library/snpStats/doc/data-input-vignette.pdf
  • /usr/lib/R/site-library/snpStats/doc/data-input-vignette.R
  • /usr/lib/R/site-library/snpStats/doc/data-input-vignette.Rnw
  • /usr/lib/R/site-library/snpStats/doc/differences.pdf
  • /usr/lib/R/site-library/snpStats/doc/differences.Rnw
  • /usr/lib/R/site-library/snpStats/doc/Fst-vignette.pdf
  • /usr/lib/R/site-library/snpStats/doc/Fst-vignette.R
  • /usr/lib/R/site-library/snpStats/doc/Fst-vignette.Rnw
  • /usr/lib/R/site-library/snpStats/doc/imputation-vignette.pdf
  • /usr/lib/R/site-library/snpStats/doc/imputation-vignette.R
  • /usr/lib/R/site-library/snpStats/doc/imputation-vignette.Rnw
  • /usr/lib/R/site-library/snpStats/doc/index.html
  • /usr/lib/R/site-library/snpStats/doc/ld-vignette.pdf
  • /usr/lib/R/site-library/snpStats/doc/ld-vignette.R
  • /usr/lib/R/site-library/snpStats/doc/ld-vignette.Rnw
  • /usr/lib/R/site-library/snpStats/doc/pca-vignette.pdf
  • /usr/lib/R/site-library/snpStats/doc/pca-vignette.R
  • /usr/lib/R/site-library/snpStats/doc/pca-vignette.Rnw
  • /usr/lib/R/site-library/snpStats/doc/snpStats-vignette.pdf
  • /usr/lib/R/site-library/snpStats/doc/snpStats-vignette.R
  • /usr/lib/R/site-library/snpStats/doc/snpStats-vignette.Rnw
  • /usr/lib/R/site-library/snpStats/doc/tdt-vignette.pdf
  • /usr/lib/R/site-library/snpStats/doc/tdt-vignette.R
  • /usr/lib/R/site-library/snpStats/doc/tdt-vignette.Rnw
  • /usr/lib/R/site-library/snpStats/extdata/mach1.out.mlprob.gz
  • /usr/lib/R/site-library/snpStats/extdata/sample.bed
  • /usr/lib/R/site-library/snpStats/extdata/sample.bim
  • /usr/lib/R/site-library/snpStats/extdata/sample.fam
  • /usr/lib/R/site-library/snpStats/extdata/sample.info
  • /usr/lib/R/site-library/snpStats/extdata/sample-long-alleles.gz
  • /usr/lib/R/site-library/snpStats/extdata/sample-long.gz
  • /usr/lib/R/site-library/snpStats/extdata/sample.ped.gz
  • /usr/lib/R/site-library/snpStats/help/aliases.rds
  • /usr/lib/R/site-library/snpStats/help/AnIndex
  • /usr/lib/R/site-library/snpStats/help/paths.rds
  • /usr/lib/R/site-library/snpStats/help/snpStats.rdb
  • /usr/lib/R/site-library/snpStats/help/snpStats.rdx
  • /usr/lib/R/site-library/snpStats/html/00Index.html
  • /usr/lib/R/site-library/snpStats/html/R.css
  • /usr/lib/R/site-library/snpStats/INDEX
  • /usr/lib/R/site-library/snpStats/libs/snpStats.so
  • /usr/lib/R/site-library/snpStats/Meta/data.rds
  • /usr/lib/R/site-library/snpStats/Meta/features.rds
  • /usr/lib/R/site-library/snpStats/Meta/hsearch.rds
  • /usr/lib/R/site-library/snpStats/Meta/links.rds
  • /usr/lib/R/site-library/snpStats/Meta/nsInfo.rds
  • /usr/lib/R/site-library/snpStats/Meta/package.rds
  • /usr/lib/R/site-library/snpStats/Meta/Rd.rds
  • /usr/lib/R/site-library/snpStats/Meta/vignette.rds
  • /usr/lib/R/site-library/snpStats/NAMESPACE
  • /usr/lib/R/site-library/snpStats/R/snpStats
  • /usr/lib/R/site-library/snpStats/R/snpStats.rdb
  • /usr/lib/R/site-library/snpStats/R/snpStats.rdx
  • /usr/share/doc/r-bioc-snpstats/changelog.Debian.gz
  • /usr/share/doc/r-bioc-snpstats/copyright
  • /usr/share/doc/r-bioc-snpstats/examples/vignettes/data-input-vignette.Rnw
  • /usr/share/doc/r-bioc-snpstats/examples/vignettes/differences.Rnw
  • /usr/share/doc/r-bioc-snpstats/examples/vignettes/Fst-vignette.Rnw
  • /usr/share/doc/r-bioc-snpstats/examples/vignettes/imputation-vignette.Rnw
  • /usr/share/doc/r-bioc-snpstats/examples/vignettes/index.html
  • /usr/share/doc/r-bioc-snpstats/examples/vignettes/ld-vignette.Rnw
  • /usr/share/doc/r-bioc-snpstats/examples/vignettes/pca-vignette.Rnw
  • /usr/share/doc/r-bioc-snpstats/examples/vignettes/snpStats-vignette.Rnw
  • /usr/share/doc/r-bioc-snpstats/examples/vignettes/tdt-vignette.Rnw
  • /usr/share/doc/r-bioc-snpstats/README.test
  • /usr/share/doc/r-bioc-snpstats/run-unit-test

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Use this package

OpenFactory can boot this operating system in a browser VM, or start a build that includes the native package name from this record.

Try Debian 12 (Bookworm) in the browserBuild an image that includes r-bioc-snpstats

Versions, suites, and repositories

Each row is recorded package-index metadata for one version, architecture, suite, and repository. Names, URLs, and sizes are source-reported; a link is a potentially mutable retrieval location, not an OpenFactory redistribution claim or proof that OpenFactory retained the artifact bytes.

VersionReleaseArchitectureRepositoryPackage sizeInstalled sizePublisher repository artifact
1.48.0+dfsg-1bookworm / mainamd64Debian 12 · main · amd646.9 MiB8.3 MiBpool/main/r/r-bioc-snpstats/r-bioc-snpstats_1.48.0+dfsg-1_amd64.deb
1.48.0+dfsg-1bookworm / mainarm64Debian 12 · main · arm646.9 MiB8.3 MiBpool/main/r/r-bioc-snpstats/r-bioc-snpstats_1.48.0+dfsg-1_arm64.deb

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Checksums and observation dates

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

1.48.0+dfsg-1 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 7d6177609fd62a2cf45560377965585ddb25ab9eb0fa27c9eed7734a37df6165

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' '7d6177609fd62a2cf45560377965585ddb25ab9eb0fa27c9eed7734a37df6165' 'r-bioc-snpstats_1.48.0+dfsg-1_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

1.48.0+dfsg-1 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 4602e7266ced76369701b1bd3c59a89c94a6aa0dbec504149ca975258087a202

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' '4602e7266ced76369701b1bd3c59a89c94a6aa0dbec504149ca975258087a202' 'r-bioc-snpstats_1.48.0+dfsg-1_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00

Catalog record completeness

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description
25/25
Artifact path and source digest
25/25
Dependency metadata
15/15
Package-file index
15/15
Homepage
5/5
License text
0/5
Source package or maintainer
10/10

Recorded total: 95/100

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5, Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Sources and provenance

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

  • Debian 12 (Bookworm) main amd64Sep 1, 2026

    Authoritative source; repository metadata signature verified, revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: main/binary-amd64/Packages.xz
    Expected SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
    Observed SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
    Result: match verified

  • Debian 12 (Bookworm) main arm64Sep 1, 2026

    Authoritative source; repository metadata signature verified, revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: main/binary-arm64/Packages.xz
    Expected SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
    Observed SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
    Result: match verified

r-bioc-snpstats Package for Debian 12 (Bookworm) | OpenFactory