Debian 12 (Bookworm) native package

ragout

Reference-Assisted Genome Ordering UTility

Packages / Debian 12 (Bookworm) / science / ragout

Package: ragout (2.3-4)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [github.com]

Reference-Assisted Genome Ordering UTility

Other Packages Related to ragout:

dep: [libc6] (>= 2.34)
GNU C Library: Shared libraries
dep: [libgcc-s1] (>= 3.0)
GCC support library
dep: [libstdc++6] (>= 11)
GNU Standard C++ Library v3
dep: [python3] [any]
interactive high-level object-oriented language (default python3 version)
dep: [python3-networkx]
tool to create, manipulate and study complex networks (Python3)

rec: [sibelia]
comparative genomics tool

Download ragout

Architecture	Package Size	Installed Size	Files
arm64	2.0 MiB	9.5 MiB	[list of files]

Package file paths (61)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/ragout
/usr/bin/ragout-maf2synteny
/usr/bin/ragout-overlap
/usr/lib/python3/dist-packages/ragout-2.3.egg-info/dependency_links.txt
/usr/lib/python3/dist-packages/ragout-2.3.egg-info/entry_points.txt
/usr/lib/python3/dist-packages/ragout-2.3.egg-info/PKG-INFO
/usr/lib/python3/dist-packages/ragout-2.3.egg-info/top_level.txt
/usr/lib/python3/dist-packages/ragout/assembly_graph/assembly_refine.py
/usr/lib/python3/dist-packages/ragout/assembly_graph/__init__.py
/usr/lib/python3/dist-packages/ragout/breakpoint_graph/breakpoint_graph.py
/usr/lib/python3/dist-packages/ragout/breakpoint_graph/chimera_detector.py
/usr/lib/python3/dist-packages/ragout/breakpoint_graph/inferer.py
/usr/lib/python3/dist-packages/ragout/breakpoint_graph/__init__.py
/usr/lib/python3/dist-packages/ragout/breakpoint_graph/permutation.py
/usr/lib/python3/dist-packages/ragout/breakpoint_graph/repeat_resolver.py
/usr/lib/python3/dist-packages/ragout/__init__.py
/usr/lib/python3/dist-packages/ragout/maf2synteny/__init__.py
/usr/lib/python3/dist-packages/ragout/maf2synteny/maf2synteny.py
/usr/lib/python3/dist-packages/ragout/main.py
/usr/lib/python3/dist-packages/ragout/newick/__init__.py
/usr/lib/python3/dist-packages/ragout/newick/lexer.py
/usr/lib/python3/dist-packages/ragout/newick/parser.py
/usr/lib/python3/dist-packages/ragout/newick/tokens.py
/usr/lib/python3/dist-packages/ragout/newick/tree.py
/usr/lib/python3/dist-packages/ragout/overlap/__init__.py
/usr/lib/python3/dist-packages/ragout/overlap/overlap.py
/usr/lib/python3/dist-packages/ragout/parsers/fasta_parser.py
/usr/lib/python3/dist-packages/ragout/parsers/__init__.py
/usr/lib/python3/dist-packages/ragout/parsers/phylogeny_parser.py
/usr/lib/python3/dist-packages/ragout/parsers/recipe_parser.py
/usr/lib/python3/dist-packages/ragout/phylogeny/inferer.py
/usr/lib/python3/dist-packages/ragout/phylogeny/__init__.py
/usr/lib/python3/dist-packages/ragout/phylogeny/phylogeny.py
/usr/lib/python3/dist-packages/ragout/scaffolder/__init__.py
/usr/lib/python3/dist-packages/ragout/scaffolder/merge_iters.py
/usr/lib/python3/dist-packages/ragout/scaffolder/output_generator.py
/usr/lib/python3/dist-packages/ragout/scaffolder/scaffolder.py
/usr/lib/python3/dist-packages/ragout/shared/config.py
/usr/lib/python3/dist-packages/ragout/shared/datatypes.py
/usr/lib/python3/dist-packages/ragout/shared/debug.py
/usr/lib/python3/dist-packages/ragout/shared/__init__.py
/usr/lib/python3/dist-packages/ragout/shared/utils.py
/usr/lib/python3/dist-packages/ragout/six.py
/usr/lib/python3/dist-packages/ragout/synteny_backend/cactus.py
/usr/lib/python3/dist-packages/ragout/synteny_backend/hal.py
/usr/lib/python3/dist-packages/ragout/synteny_backend/__init__.py
/usr/lib/python3/dist-packages/ragout/synteny_backend/maf.py
/usr/lib/python3/dist-packages/ragout/synteny_backend/sibelia.py
/usr/lib/python3/dist-packages/ragout/synteny_backend/synteny_backend.py
/usr/lib/python3/dist-packages/ragout/tests/data/DH1.fasta
/usr/lib/python3/dist-packages/ragout/tests/data/ecoli.rcp
/usr/lib/python3/dist-packages/ragout/tests/data/mg1655_contigs.fasta
/usr/lib/python3/dist-packages/ragout/tests/data/mg1655.coords
/usr/lib/python3/dist-packages/ragout/tests/__init__.py
/usr/lib/python3/dist-packages/ragout/tests/test_toy.py
/usr/lib/python3/dist-packages/ragout/__version__.py
/usr/share/doc/ragout/changelog.Debian.gz
/usr/share/doc/ragout/copyright
/usr/share/man/man1/ragout.1.gz
/usr/share/man/man1/ragout-maf2synteny.1.gz
/usr/share/man/man1/ragout-overlap.1.gz

Field source: Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00

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Versions, suites, and repositories

Each row is recorded package-index metadata for one version, architecture, suite, and repository. Names, URLs, and sizes are source-reported; a link is a potentially mutable retrieval location, not an OpenFactory redistribution claim or proof that OpenFactory retained the artifact bytes.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
2.3-4	bookworm / main	arm64	Debian 12 · main · arm64	2.0 MiB	9.5 MiB	pool/main/r/ragout/ragout_2.3-4_arm64.deb

Field source: Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00

Checksums and observation dates

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

2.3-4 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 955cb18378ff17dbfec070c38c1d832bf0e170bff16228f4debc137d05dc6f64

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '955cb18378ff17dbfec070c38c1d832bf0e170bff16228f4debc137d05dc6f64' 'ragout_2.3-4_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00

Catalog record completeness

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5, Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Sources and provenance

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 12 (Bookworm) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Observed SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Result: match verified
Debian 12 (Bookworm) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Observed SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Result: match verified